Clone Information

BLAST Search Result

Clone Name	rbaal14c06
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	UBP35_HUMAN (Q9P2H5) Ubiquitin carboxyl-terminal hydrolase 35 (E...	33	0.84
2	RL4_SHIFL (Q83PY4) 50S ribosomal protein L4	33	0.84
3	RL4_SALTY (P60726) 50S ribosomal protein L4	33	0.84
4	RL4_SALTI (P60727) 50S ribosomal protein L4	33	0.84
5	RL4_ECOLI (P60723) 50S ribosomal protein L4	33	0.84
6	RL4_ECOL6 (P60724) 50S ribosomal protein L4	33	0.84
7	RL4_ECO57 (P60725) 50S ribosomal protein L4	33	0.84
8	VATI1_TREPA (O83444) V-type ATP synthase subunit I 1 (EC 3.6.3.1...	32	1.1
9	RL4_PASMU (Q9CL33) 50S ribosomal protein L4	32	1.4
10	RL4_HAEDU (Q7VKD3) 50S ribosomal protein L4	32	1.4
11	VGF_HUMAN (O15240) Neurosecretory protein VGF precursor	32	1.4
12	RL4_MORMO (P49226) 50S ribosomal protein L4	32	1.9
13	RL4_PHOLL (Q7MYF2) 50S ribosomal protein L4	32	1.9
14	PRGR_CHICK (P07812) Progesterone receptor (PR)	31	2.4
15	MFAP1_MOUSE (Q9CQU1) Microfibrillar-associated protein 1	31	2.4
16	MFAP1_HUMAN (P55081) Microfibrillar-associated protein 1	31	2.4
17	IF2_YERPS (Q66F60) Translation initiation factor IF-2	31	2.4
18	IF2_YERPE (Q8ZBC2) Translation initiation factor IF-2	31	2.4
19	THO1_YEAST (P40040) Protein THO1	31	3.2
20	RL4_BLOFL (Q7VQE7) 50S ribosomal protein L4	31	3.2
21	GELS_MOUSE (P13020) Gelsolin precursor (Actin-depolymerizing fac...	31	3.2
22	UBF1_HUMAN (P17480) Nucleolar transcription factor 1 (Upstream-b...	30	4.2
23	EMRY_ECOLI (P52600) Multidrug resistance protein Y	30	4.2
24	RL4_YERPS (P60731) 50S ribosomal protein L4	30	4.2
25	RL4_YERPE (P60730) 50S ribosomal protein L4	30	4.2
26	IF38_SCHPO (O14164) Probable eukaryotic translation initiation f...	30	5.4
27	IF3A_HUMAN (Q14152) Eukaryotic translation initiation factor 3 s...	30	5.4
28	GAL80_KLULA (Q06433) Galactose/lactose metabolism regulatory pro...	30	5.4
29	PRP5_ASPOR (Q2U2J6) Pre-mRNA-processing ATP-dependent RNA helica...	30	5.4
30	MRAW_PSEPK (Q88N84) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)	30	5.4
31	MAP1B_RAT (P15205) Microtubule-associated protein 1B (MAP 1B) (N...	30	7.1
32	RL4_HAEIN (P44345) 50S ribosomal protein L4	30	7.1
33	IF2_ERWCT (Q6D9A5) Translation initiation factor IF-2	30	7.1
34	TPR_HUMAN (P12270) Nucleoprotein TPR	30	7.1
35	SWR1_YARLI (Q6CA87) Helicase SWR1 (EC 3.6.1.-)	30	7.1
36	MAP1B_HUMAN (P46821) Microtubule-associated protein 1B (MAP 1B) ...	30	7.1
37	ITSN1_RAT (Q9WVE9) Intersectin-1 (EH domain and SH3 domain regul...	30	7.1
38	PTMS_MOUSE (Q9D0J8) Parathymosin	29	9.3
39	HDAC5_MOUSE (Q9Z2V6) Histone deacetylase 5 (HD5) (Histone deacet...	29	9.3
40	NU5M_MARPO (P26849) NADH-ubiquinone oxidoreductase chain 5 (EC 1...	29	9.3
41	ITSN1_MOUSE (Q9Z0R4) Intersectin-1 (EH and SH3 domains protein 1)	29	9.3
42	BFSP1_HUMAN (Q12934) Filensin (Beaded filament structural protei...	29	9.3

>UBP35_HUMAN (Q9P2H5) Ubiquitin carboxyl-terminal hydrolase 35 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 35)
           (Ubiquitin-specific-processing protease 35)
           (Deubiquitinating enzyme 35)
          Length = 1017

 Score = 32.7 bits (73), Expect = 0.84
 Identities = 21/88 (23%), Positives = 38/88 (43%)
 Frame = +2

Query: 326 SNLRRVEKERVGQADQQPQEQNGDAEADVAVLGLRYLLGEGSDRAPLQEEDEHRPVKRNI 505
           S   R+E+E  G+ ++  +E+ G+ E            GEG      + E+E   V++  
Sbjct: 671 SQEERIEREEEGKEERTEKEEVGEEEESTR--------GEGEREKEEEVEEEEEKVEKET 722

Query: 506 AEERREPEQRDSDATKPR*YLSSPHGER 589
            +E  + ++ DS         + P GER
Sbjct: 723 EKEAEQEKEEDSLGAGTHPDAAIPSGER 750

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>RL4_SHIFL (Q83PY4) 50S ribosomal protein L4|
          Length = 201

 Score = 32.7 bits (73), Expect = 0.84
 Identities = 20/70 (28%), Positives = 33/70 (47%)
 Frame = +1

Query: 109 STLTQGELSLATTRKKLLLFYFATARSTGASQGSKLFL*SQGNREDGKTSHRYSWRKRSR 288
           S LT  E +      + L+     A + GA QG++    +Q  R +   S +  WR++  
Sbjct: 10  SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTR----AQKTRAEVTGSGKKPWRQKGT 65

Query: 289 GEFRNSSVKS 318
           G  R+ S+KS
Sbjct: 66  GRARSGSIKS 75

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>RL4_SALTY (P60726) 50S ribosomal protein L4|
          Length = 201

 Score = 32.7 bits (73), Expect = 0.84
 Identities = 20/70 (28%), Positives = 33/70 (47%)
 Frame = +1

Query: 109 STLTQGELSLATTRKKLLLFYFATARSTGASQGSKLFL*SQGNREDGKTSHRYSWRKRSR 288
           S LT  E +      + L+     A + GA QG++    +Q  R +   S +  WR++  
Sbjct: 10  SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTR----AQKTRAEVTGSGKKPWRQKGT 65

Query: 289 GEFRNSSVKS 318
           G  R+ S+KS
Sbjct: 66  GRARSGSIKS 75

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>RL4_SALTI (P60727) 50S ribosomal protein L4|
          Length = 201

 Score = 32.7 bits (73), Expect = 0.84
 Identities = 20/70 (28%), Positives = 33/70 (47%)
 Frame = +1

Query: 109 STLTQGELSLATTRKKLLLFYFATARSTGASQGSKLFL*SQGNREDGKTSHRYSWRKRSR 288
           S LT  E +      + L+     A + GA QG++    +Q  R +   S +  WR++  
Sbjct: 10  SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTR----AQKTRAEVTGSGKKPWRQKGT 65

Query: 289 GEFRNSSVKS 318
           G  R+ S+KS
Sbjct: 66  GRARSGSIKS 75

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>RL4_ECOLI (P60723) 50S ribosomal protein L4|
          Length = 201

 Score = 32.7 bits (73), Expect = 0.84
 Identities = 20/70 (28%), Positives = 33/70 (47%)
 Frame = +1

Query: 109 STLTQGELSLATTRKKLLLFYFATARSTGASQGSKLFL*SQGNREDGKTSHRYSWRKRSR 288
           S LT  E +      + L+     A + GA QG++    +Q  R +   S +  WR++  
Sbjct: 10  SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTR----AQKTRAEVTGSGKKPWRQKGT 65

Query: 289 GEFRNSSVKS 318
           G  R+ S+KS
Sbjct: 66  GRARSGSIKS 75

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>RL4_ECOL6 (P60724) 50S ribosomal protein L4|
          Length = 201

 Score = 32.7 bits (73), Expect = 0.84
 Identities = 20/70 (28%), Positives = 33/70 (47%)
 Frame = +1

Query: 109 STLTQGELSLATTRKKLLLFYFATARSTGASQGSKLFL*SQGNREDGKTSHRYSWRKRSR 288
           S LT  E +      + L+     A + GA QG++    +Q  R +   S +  WR++  
Sbjct: 10  SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTR----AQKTRAEVTGSGKKPWRQKGT 65

Query: 289 GEFRNSSVKS 318
           G  R+ S+KS
Sbjct: 66  GRARSGSIKS 75

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>RL4_ECO57 (P60725) 50S ribosomal protein L4|
          Length = 201

 Score = 32.7 bits (73), Expect = 0.84
 Identities = 20/70 (28%), Positives = 33/70 (47%)
 Frame = +1

Query: 109 STLTQGELSLATTRKKLLLFYFATARSTGASQGSKLFL*SQGNREDGKTSHRYSWRKRSR 288
           S LT  E +      + L+     A + GA QG++    +Q  R +   S +  WR++  
Sbjct: 10  SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTR----AQKTRAEVTGSGKKPWRQKGT 65

Query: 289 GEFRNSSVKS 318
           G  R+ S+KS
Sbjct: 66  GRARSGSIKS 75

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>VATI1_TREPA (O83444) V-type ATP synthase subunit I 1 (EC 3.6.3.14) (V-type|
           ATPase subunit I 1)
          Length = 622

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
 Frame = -1

Query: 571 RKVSSRLGSVTIALLGLSSLFSDVAFYWAVLIFFLQRGPIAPLSEEITEP--ENSYIGLG 398
           + V+  + +V  ALLG+ ++F+DV  Y  +    L  G I+    E+T P   N    LG
Sbjct: 513 QSVADSMKNVINALLGIVNVFADVMSYIRLWAVGLAGGAISATVNEMTHPLFANFLAFLG 572

Query: 397 VAILFLG 377
           + +L  G
Sbjct: 573 IVLLLFG 579

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>RL4_PASMU (Q9CL33) 50S ribosomal protein L4|
          Length = 200

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 19/70 (27%), Positives = 32/70 (45%)
 Frame = +1

Query: 109 STLTQGELSLATTRKKLLLFYFATARSTGASQGSKLFL*SQGNREDGKTSHRYSWRKRSR 288
           + LT  E +      + L+     A + GA QGS+    +Q  R +   S +  WR++  
Sbjct: 9   NALTVSETTFGREFNEALIHQVVVAYAAGARQGSR----AQKTRAEVSGSGKKPWRQKGT 64

Query: 289 GEFRNSSVKS 318
           G  R+  +KS
Sbjct: 65  GRARSGDIKS 74

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>RL4_HAEDU (Q7VKD3) 50S ribosomal protein L4|
          Length = 200

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 19/70 (27%), Positives = 32/70 (45%)
 Frame = +1

Query: 109 STLTQGELSLATTRKKLLLFYFATARSTGASQGSKLFL*SQGNREDGKTSHRYSWRKRSR 288
           + LT  E +      + L+     A + GA QGS+    +Q  R +   S +  WR++  
Sbjct: 9   NALTVSETTFGREFNEALIHQVVVAYAAGARQGSR----AQKTRAEVSGSGKKPWRQKGT 64

Query: 289 GEFRNSSVKS 318
           G  R+  +KS
Sbjct: 65  GRARSGDIKS 74

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>VGF_HUMAN (O15240) Neurosecretory protein VGF precursor|
          Length = 616

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 12/99 (12%)
 Frame = +2

Query: 269 VGGR---EAAVSFETLQSKVEISNLRRVEKERVGQADQQPQEQNGDAEADVAVLGLRYLL 439
           +GGR   EAA   E+ + + E    RR  +ERVG+ D++  E   +AEAD A    +  L
Sbjct: 346 LGGRGLQEAAEERESAREEEEAEQERRGGEERVGEEDEEAAEA-AEAEADEAERARQNAL 404

Query: 440 -------GE--GSDRAPLQEEDEHRPVKRNIAEERREPE 529
                  GE    D+   +E   HR  +    EE  E E
Sbjct: 405 LFAEEEDGEAGAEDKRSQEETPGHRRKEAEGTEEGGEEE 443

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>RL4_MORMO (P49226) 50S ribosomal protein L4|
          Length = 200

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 19/69 (27%), Positives = 33/69 (47%)
 Frame = +1

Query: 112 TLTQGELSLATTRKKLLLFYFATARSTGASQGSKLFL*SQGNREDGKTSHRYSWRKRSRG 291
           +LT  E +      + L+     A + GA QG++    +Q  R +   S +  WR++  G
Sbjct: 10  SLTVSETTFGRDFNEALVHQVVVAYAAGARQGTR----AQKTRAEVTGSGKKPWRQKGTG 65

Query: 292 EFRNSSVKS 318
             R+ S+KS
Sbjct: 66  RARSGSIKS 74

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>RL4_PHOLL (Q7MYF2) 50S ribosomal protein L4|
          Length = 201

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 19/68 (27%), Positives = 32/68 (47%)
 Frame = +1

Query: 115 LTQGELSLATTRKKLLLFYFATARSTGASQGSKLFL*SQGNREDGKTSHRYSWRKRSRGE 294
           LT  E +      + L+     A + GA QG++    +Q  R +   S +  WR++  G 
Sbjct: 12  LTVSETTFGRDFNEALVHQVVVAYAAGARQGTR----AQKTRAEVSGSGKKPWRQKGTGR 67

Query: 295 FRNSSVKS 318
            R+ S+KS
Sbjct: 68  ARSGSIKS 75

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>PRGR_CHICK (P07812) Progesterone receptor (PR)|
          Length = 786

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 1/84 (1%)
 Frame = +2

Query: 311 SKVEISNLRRVEKERVGQADQQPQEQNGDAEA-DVAVLGLRYLLGEGSDRAPLQEEDEHR 487
           ++V+    R     R G    Q     G+AE  DVA+ GL Y      +    + E+E  
Sbjct: 2   TEVKSKETRAPSSARDGAVLLQAPPSRGEAEGIDVALDGLLYPRSSDEEEEEEENEEEEE 61

Query: 488 PVKRNIAEERREPEQRDSDATKPR 559
             +    EE  E E+ D D    R
Sbjct: 62  EEEPQQREEEEEEEEEDRDCPSYR 85

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>MFAP1_MOUSE (Q9CQU1) Microfibrillar-associated protein 1|
          Length = 439

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = +2

Query: 428 RYLLGEGSDRAPLQ---EEDEHRPVKRNIAEERREPEQRDSDAT 550
           RY+ G+  D AP++   EEDE     +   E+  EPE+++ D++
Sbjct: 38  RYVSGKRPDYAPMESSDEEDEEFQFIKKAKEQEAEPEEQEEDSS 81

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>MFAP1_HUMAN (P55081) Microfibrillar-associated protein 1|
          Length = 439

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = +2

Query: 428 RYLLGEGSDRAPLQ---EEDEHRPVKRNIAEERREPEQRDSDAT 550
           RY+ G+  D AP++   EEDE     +   E+  EPE+++ D++
Sbjct: 38  RYVSGKRPDYAPMESSDEEDEEFQFIKKAKEQEAEPEEQEEDSS 81

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>IF2_YERPS (Q66F60) Translation initiation factor IF-2|
          Length = 892

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 21/98 (21%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
 Frame = +2

Query: 266 TVGGREAAVSFETLQSKVEISNLRRVEKERVGQADQQPQEQ-NGDAEADVAVLGLRYLLG 442
           + GG+  +V  E  + +  ++     + +   QA ++ +EQ   +AEA    +       
Sbjct: 74  STGGKSKSVQIEVRKKRTYVNTPEAEQAKAEEQAQREAEEQAQREAEATAQKIAEEKAKR 133

Query: 443 EGSDRAPLQEEDEHRPVKRNIAEERREPEQRDSDATKP 556
           E  ++A  +  ++    KR  AE+ +   Q+  + TKP
Sbjct: 134 EAEEQAKREAAEK---AKRQAAEKEKVTNQQTDEKTKP 168

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>IF2_YERPE (Q8ZBC2) Translation initiation factor IF-2|
          Length = 892

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 21/98 (21%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
 Frame = +2

Query: 266 TVGGREAAVSFETLQSKVEISNLRRVEKERVGQADQQPQEQ-NGDAEADVAVLGLRYLLG 442
           + GG+  +V  E  + +  ++     + +   QA ++ +EQ   +AEA    +       
Sbjct: 74  STGGKSKSVQIEVRKKRTYVNTPEAEQAKAEEQAQREAEEQAQREAEATAQKIAEEKAKR 133

Query: 443 EGSDRAPLQEEDEHRPVKRNIAEERREPEQRDSDATKP 556
           E  ++A  +  ++    KR  AE+ +   Q+  + TKP
Sbjct: 134 EAEEQAKREAAEK---AKRQAAEKEKVTNQQTDEKTKP 168

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>THO1_YEAST (P40040) Protein THO1|
          Length = 218

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 9/102 (8%)
 Frame = +2

Query: 323 ISNLRRVEKERVGQADQQPQEQNGDAEADVAVLGLRYLLGEGSDRAPLQEEDEHRPVKRN 502
           +  L + ++E  G+++  PQEQN +               +GS+ A ++E     P  +N
Sbjct: 31  VQRLIKDDEESKGESEVSPQEQNQE---------------QGSEPAAIEE-----PASQN 70

Query: 503 IAE---------ERREPEQRDSDATKPR*YLSSPHGERYAAA 601
           I E         E  EP++ + D  KP    S+   E   AA
Sbjct: 71  ITEKKEVSSEPKETNEPKEENKDVQKPSDGPSATASENEQAA 112

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>RL4_BLOFL (Q7VQE7) 50S ribosomal protein L4|
          Length = 212

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = +1

Query: 202 QGSKLFL*SQGNREDGKTSHRYSWRKRSRGEFRNSSVKS 318
           QGSK    SQ +R D   S++  WR++  G  R+ SVKS
Sbjct: 50  QGSK----SQKSRSDVSGSNKKPWRQKGTGRARSGSVKS 84

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>GELS_MOUSE (P13020) Gelsolin precursor (Actin-depolymerizing factor) (ADF)|
           (Brevin)
          Length = 780

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 20/67 (29%), Positives = 33/67 (49%)
 Frame = +2

Query: 296 FETLQSKVEISNLRRVEKERVGQADQQPQEQNGDAEADVAVLGLRYLLGEGSDRAPLQEE 475
           FE L++      +R  + ER G+A     E+ G+ EA + VLG +  L EG++    ++ 
Sbjct: 233 FERLKATQVSKGIR--DNERSGRAQVHVSEEGGEPEAMLQVLGPKPALPEGTEDTAKEDA 290

Query: 476 DEHRPVK 496
              R  K
Sbjct: 291 ANRRLAK 297

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>UBF1_HUMAN (P17480) Nucleolar transcription factor 1 (Upstream-binding factor|
           1) (UBF-1) (Autoantigen NOR-90)
          Length = 764

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 19/81 (23%), Positives = 33/81 (40%)
 Frame = +2

Query: 302 TLQSKVEISNLRRVEKERVGQADQQPQEQNGDAEADVAVLGLRYLLGEGSDRAPLQEEDE 481
           TLQSK E       +++   + +++  ++NGD+  D            G D +    EDE
Sbjct: 670 TLQSKSESEEDDEEDEDDEDEDEEEEDDENGDSSED------------GGDSSESSSEDE 717

Query: 482 HRPVKRNIAEERREPEQRDSD 544
                 N  ++  E +  D D
Sbjct: 718 SEDGDENEEDDEDEDDDEDDD 738

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>EMRY_ECOLI (P52600) Multidrug resistance protein Y|
          Length = 512

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 10/64 (15%)
 Frame = -1

Query: 592 IALAMWGRKVSSRLGSVTIALL-----GLSSLFSDVAFYWAVLIFF-----LQRGPIAPL 443
           IA+ + GR ++ R+G + + LL      LSSL   ++    VLIFF     L  GP+ PL
Sbjct: 68  IAIPVTGR-LAQRIGELRLFLLSVTFFSLSSLMCSLSTNLDVLIFFRVVQGLMAGPLIPL 126

Query: 442 SEEI 431
           S+ +
Sbjct: 127 SQSL 130

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>RL4_YERPS (P60731) 50S ribosomal protein L4|
          Length = 201

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 20/68 (29%), Positives = 31/68 (45%)
 Frame = +1

Query: 115 LTQGELSLATTRKKLLLFYFATARSTGASQGSKLFL*SQGNREDGKTSHRYSWRKRSRGE 294
           LT  E +      + L+     A + GA QG++    +Q  R +   S +  WR++  G 
Sbjct: 12  LTVSETTFGRDFNEALVHQVVVAYAAGARQGTR----AQKTRAEVTGSGKKPWRQKGTGR 67

Query: 295 FRNSSVKS 318
            R  SVKS
Sbjct: 68  ARAGSVKS 75

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>RL4_YERPE (P60730) 50S ribosomal protein L4|
          Length = 201

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 20/68 (29%), Positives = 31/68 (45%)
 Frame = +1

Query: 115 LTQGELSLATTRKKLLLFYFATARSTGASQGSKLFL*SQGNREDGKTSHRYSWRKRSRGE 294
           LT  E +      + L+     A + GA QG++    +Q  R +   S +  WR++  G 
Sbjct: 12  LTVSETTFGRDFNEALVHQVVVAYAAGARQGTR----AQKTRAEVTGSGKKPWRQKGTGR 67

Query: 295 FRNSSVKS 318
            R  SVKS
Sbjct: 68  ARAGSVKS 75

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>IF38_SCHPO (O14164) Probable eukaryotic translation initiation factor 3 93 kDa|
           subunit (eIF3 p93)
          Length = 918

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 26/114 (22%), Positives = 55/114 (48%), Gaps = 7/114 (6%)
 Frame = +2

Query: 203 KAPSYSYDHKGIAKMAKHLTDTVGGREAAVSFETLQSKVEISNLRRVEKERVGQADQQPQ 382
           KA + S D +  ++ ++   +T    ++ VS E   S+ E  +    E+E   + +    
Sbjct: 73  KAVAASEDSESDSESSEEEEETESEEDSEVSDE---SESESESESESEEESESEEESDES 129

Query: 383 EQNGDA-------EADVAVLGLRYLLGEGSDRAPLQEEDEHRPVKRNIAEERRE 523
           E++G +       + +    GL++L GE S+ +   +E+E R V ++  ++R E
Sbjct: 130 ERSGPSSFLKKPEKEEAKPAGLKFLRGESSEES--SDEEEGRRVVKSAKDKRYE 181

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>IF3A_HUMAN (Q14152) Eukaryotic translation initiation factor 3 subunit 10 (eIF-3|
            theta) (eIF3 p167) (eIF3 p180) (eIF3 p185) (eIF3a)
          Length = 1382

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 19/50 (38%), Positives = 22/50 (44%)
 Frame = +2

Query: 440  GEGSDRAPLQEEDEHRPVKRNIAEERREPEQRDSDATKPR*YLSSPHGER 589
            GEG D       DE RP +R   +E REP  R  D   PR  +    G R
Sbjct: 921  GEGRDEDRSHRRDEERP-RRLGDDEDREPSLRPDDDRVPRRGMDDDRGPR 969

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>GAL80_KLULA (Q06433) Galactose/lactose metabolism regulatory protein GAL80|
          Length = 457

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = +2

Query: 173 LLLQGALEHHKAPSYSYDHKG---IAKMAKHLTDTVGGREAAVSFETLQSKVEISNL 334
           LL QG LE+ K P  S   KG   + K+ K+L   + G +  +  E     VEISNL
Sbjct: 263 LLFQGILENGKVP-VSCSFKGGTPVKKLTKNLVIDIHGTKGDLKIEGDAGFVEISNL 318

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>PRP5_ASPOR (Q2U2J6) Pre-mRNA-processing ATP-dependent RNA helicase prp5 (EC|
           3.6.1.-)
          Length = 1186

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 455 RAPLQEEDEHRPVKRNIAEERREPEQRDSD 544
           RA  ++ED +RP +R+ + +RR    RD D
Sbjct: 71  RADYRDEDTYRPSRRDRSRDRRRSRDRDDD 100

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>MRAW_PSEPK (Q88N84) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)|
          Length = 315

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
 Frame = +2

Query: 269 VGGREAAVSFETLQSKVEISNLRRVEKERVGQADQQPQE---QNGDAEADVAVLGLRYLL 439
           VGGR A +SF +L+ ++    +R++ K   G+AD  P+    Q+   E  + ++G     
Sbjct: 236 VGGRLAVISFHSLEDRIVKLFMRKLVK---GEADNLPRNLPVQHKVFEPKIKLIGKAQFA 292

Query: 440 GEGSDRAPLQEEDEHRPVKRNIAEERR 520
            E    A L+     R     +AE+ R
Sbjct: 293 SE----AELKANPRSRSAVMRVAEKLR 315

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>MAP1B_RAT (P15205) Microtubule-associated protein 1B (MAP 1B) (Neuraxin)|
            [Contains: MAP1 light chain LC1]
          Length = 2459

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +2

Query: 383  EQNGDAEADVAVLGLRYLLGEGSDRAPLQEEDEHRPVKRNIAEERREPEQRDSD 544
            E+   AEADV +   R  +  G DRA   EED    +++  AE+  E  + + D
Sbjct: 967  EEIAKAEADVHIKEKRESVASGDDRA---EEDMDEALEKGEAEQSEEEGEEEED 1017

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>RL4_HAEIN (P44345) 50S ribosomal protein L4|
          Length = 200

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 18/70 (25%), Positives = 31/70 (44%)
 Frame = +1

Query: 109 STLTQGELSLATTRKKLLLFYFATARSTGASQGSKLFL*SQGNREDGKTSHRYSWRKRSR 288
           + LT  E +      + L+     A + GA QG++    +Q  R +   S +  WR++  
Sbjct: 9   NALTVSETTFGREFNEALIHQVVVAYAAGARQGTR----AQKTRAEVSGSGKKPWRQKGT 64

Query: 289 GEFRNSSVKS 318
           G  R   +KS
Sbjct: 65  GRARAGDIKS 74

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>IF2_ERWCT (Q6D9A5) Translation initiation factor IF-2|
          Length = 900

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 22/102 (21%), Positives = 44/102 (43%), Gaps = 5/102 (4%)
 Frame = +2

Query: 266 TVGGREAAVSFETLQSKVEISN----LRRVEKERVGQADQQPQEQNGDAEADVAVLGLRY 433
           + GG+  +V  E  +++  +       ++ E+E   + + + Q Q    E       LR 
Sbjct: 74  STGGKSKSVQIEVRKTRTYVKRDPIEAQQAEEEEQARREAEEQAQRAAEEQVKREADLRE 133

Query: 434 LLGEGSDRAPLQEEDEH-RPVKRNIAEERREPEQRDSDATKP 556
              +    A  Q + E     KR++AE+ +   Q++ + TKP
Sbjct: 134 TAEKAKRAADEQAKREAAEKAKRDVAEKEKVTNQQNENMTKP 175

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>TPR_HUMAN (P12270) Nucleoprotein TPR|
          Length = 2349

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
 Frame = +2

Query: 299  ETLQSKVEISNLRRVEKERVGQADQQPQEQNGDAEADVAVLGLRYLLGEGSDRA------ 460
            ET+   +E + + R EKER+ Q  QQ Q +    E D  +L L+    E S+++      
Sbjct: 1267 ETMNVVMETNKMLREEKERLEQDLQQMQAKVRKLELD--ILPLQEANAELSEKSGMLQAE 1324

Query: 461  -PLQEEDEHRPVKRNIAEERREPEQRDSDATKPR*YLS 571
              L EED  R   RN   +    +Q+D D  + R  LS
Sbjct: 1325 KKLLEEDVKRWKARN---QHLVSQQKDPDTEEYRKLLS 1359

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>SWR1_YARLI (Q6CA87) Helicase SWR1 (EC 3.6.1.-)|
          Length = 1772

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 9/63 (14%)
 Frame = +2

Query: 368 DQQPQEQNGDAEADVAVLGLRYLLG---------EGSDRAPLQEEDEHRPVKRNIAEERR 520
           D+   EQ  D EA+    GL  L+G         E  D   ++EE+E   V+ +  EE+ 
Sbjct: 788 DESSSEQESDYEAETTAPGLAALMGGPKAIEEDEEEDDAFVIKEEEEEVEVEDDEEEEKA 847

Query: 521 EPE 529
           + E
Sbjct: 848 DTE 850

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>MAP1B_HUMAN (P46821) Microtubule-associated protein 1B (MAP 1B) [Contains: MAP1|
            light chain LC1]
          Length = 2468

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = +2

Query: 383  EQNGDAEADVAVLGLRYLLGEGSDRAPLQEEDEHRPVKRNIAEERREPEQRDSDATKPR 559
            E++  AEAD  +   R  +  G DRA   EED    +++  AE+  E    +  A   R
Sbjct: 975  EESAKAEADAYIREKRESVASGDDRA---EEDMDEAIEKGEAEQSEEEADEEDKAEDAR 1030

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>ITSN1_RAT (Q9WVE9) Intersectin-1 (EH domain and SH3 domain regulator of|
           endocytosis 1)
          Length = 1217

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 14/108 (12%)
 Frame = +2

Query: 305 LQSKVEISNLRRVEKERVGQADQQPQEQNGDAEADVAVLGLRYLLGEGSDRAPLQEEDEH 484
           + SK ++   R +E ER+ Q +Q+ +    + + +     ++    +  +   +Q+E++ 
Sbjct: 612 IHSKQQLQKQRSIEAERLKQKEQERKSLELEKQKEEGQRRVQERDKQWQEH--VQQEEQQ 669

Query: 485 RP--------------VKRNIAEERREPEQRDSDATKPR*YLSSPHGE 586
           RP              VK+  AEER +PE +D  +      L  PH E
Sbjct: 670 RPRKPHEEDKLKREDSVKKKEAEERAKPEVQDKQSR-----LFHPHQE 712

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>PTMS_MOUSE (Q9D0J8) Parathymosin|
          Length = 100

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 19/65 (29%), Positives = 32/65 (49%)
 Frame = +2

Query: 341 VEKERVGQADQQPQEQNGDAEADVAVLGLRYLLGEGSDRAPLQEEDEHRPVKRNIAEERR 520
           VE+E  G A+++ +E   D E D           EG +    +EE++  PV++  AEE  
Sbjct: 37  VEEEENG-AEEEEEETAEDGEDD----------DEGDEEDEEEEEEDEGPVRKRTAEEED 85

Query: 521 EPEQR 535
           E + +
Sbjct: 86  EADPK 90

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>HDAC5_MOUSE (Q9Z2V6) Histone deacetylase 5 (HD5) (Histone deacetylase mHDA1)|
          Length = 1113

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 16/64 (25%), Positives = 29/64 (45%)
 Frame = +2

Query: 353 RVGQADQQPQEQNGDAEADVAVLGLRYLLGEGSDRAPLQEEDEHRPVKRNIAEERREPEQ 532
           + G+  +QP     + E ++       LLGEG+   P +   E    + ++ EE  E E+
Sbjct: 527 KTGELSRQPTTHPEETEEELTEQQ-EALLGEGALTIPREGSTESESTQEDLEEEEEEEEE 585

Query: 533 RDSD 544
            + D
Sbjct: 586 EEED 589

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>NU5M_MARPO (P26849) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 5)
          Length = 669

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -1

Query: 598 GRIALAMWGRKVSSR-LGSVTIALLGLSSLFSDVAFYWAVL 479
           G  A   +GR + SR +  VT   + LSS+FS +AFY   L
Sbjct: 12  GSFAAGFFGRFLGSRGVAVVTTTCVSLSSIFSCIAFYEVAL 52

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>ITSN1_MOUSE (Q9Z0R4) Intersectin-1 (EH and SH3 domains protein 1)|
          Length = 1714

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 12/106 (11%)
 Frame = +2

Query: 305 LQSKVEISNLRRVEKERVGQADQQP-----QEQNGDAEADVAVLGLRYLLGEGSDRAPL- 466
           + SK ++   R +E  R+ Q +Q+      ++Q  DA+  V     ++L     +  P  
Sbjct: 612 IHSKQQLQKQRSLEAARLKQKEQERKSLELEKQKEDAQRRVQERDKQWLEHVQQEEQPRP 671

Query: 467 ---QEEDEHR---PVKRNIAEERREPEQRDSDATKPR*YLSSPHGE 586
               EED  +    V++  AEER +PE +D  +      L  PH E
Sbjct: 672 RKPHEEDRLKREDSVRKKEAEERAKPEMQDKQSR-----LFHPHQE 712

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>BFSP1_HUMAN (Q12934) Filensin (Beaded filament structural protein 1) (Lens|
           fiber cell beaded-filament structural protein CP 115)
           (CP115) (Lens intermediate filament-like heavy) (LIFL-H)
          Length = 665

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +2

Query: 440 GEGSDRAPLQEEDEHRPVKRNIAEERREPEQRDSDATKP 556
           G+  D+ P+ +E E    +    EE+RE E+RD ++ +P
Sbjct: 534 GQPIDQQPIDKEIEPDGAELEGPEEKREGEERDEESRRP 572


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,970,789
Number of Sequences: 219361
Number of extensions: 1565736
Number of successful extensions: 5141
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 4919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5130
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5367617986
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result