>PROSC_MOUSE (Q9Z2Y8) Proline synthetase co-transcribed bacterial homolog|
           protein
          Length = 274

 Score = 98.6 bits (244), Expect(2) = 2e-35
 Identities = 50/91 (54%), Positives = 66/91 (72%), Gaps = 3/91 (3%)
 Frame = -3

Query: 468 VELAKHVKLACPNLILSGLMTIGM--KDYSSTPE-NFKALVNCKLEVCKALGIPTEQFEL 298
           + + +H+K +CP+L   GLMTIG    D S  P  +F+ L+  + E+C+ LGIP EQ EL
Sbjct: 162 IAVVEHIKASCPSLEFVGLMTIGSFGHDLSQGPNPDFQRLLTLRRELCEKLGIPVEQVEL 221

Query: 297 SMGMSGDFEQAIELGSTNVRVGSTIFGPREY 205
           SMGMS DF+ AIE+GSTNVR+GSTIFG R+Y
Sbjct: 222 SMGMSMDFQHAIEVGSTNVRIGSTIFGERDY 252



 Score = 70.5 bits (171), Expect(2) = 2e-35
 Identities = 36/67 (53%), Positives = 49/67 (73%), Gaps = 1/67 (1%)
 Frame = -1

Query: 677 DIRWHFVGHLQSNKVKSLLAAVPNLDMVEGVGNEKIANHLDRAVVSLG-REPLKVMVQVN 501
           +I+WHF+GHLQ   V  L+A VPNL M+E V + K+A+ ++ +    G  EPLKVMVQ+N
Sbjct: 88  EIKWHFIGHLQKQNVNKLMA-VPNLSMLETVDSVKLADKVNSSWQKKGPTEPLKVMVQIN 146

Query: 500 TSGEESK 480
           TSGE+SK
Sbjct: 147 TSGEDSK 153

>PROSC_HUMAN (O94903) Proline synthetase co-transcribed bacterial homolog|
           protein
          Length = 275

 Score = 97.1 bits (240), Expect(2) = 8e-34
 Identities = 48/91 (52%), Positives = 64/91 (70%), Gaps = 3/91 (3%)
 Frame = -3

Query: 468 VELAKHVKLACPNLILSGLMTIGM--KDYSSTPE-NFKALVNCKLEVCKALGIPTEQFEL 298
           + + +H+   CPNL   GLMTIG    D S  P  +F+ L++ + E+CK L IP +Q EL
Sbjct: 162 IAIVEHINAKCPNLEFVGLMTIGSFGHDLSQGPNPDFQLLLSLREELCKKLNIPADQVEL 221

Query: 297 SMGMSGDFEQAIELGSTNVRVGSTIFGPREY 205
           SMGMS DF+ A+E+GSTNVR+GSTIFG R+Y
Sbjct: 222 SMGMSADFQHAVEVGSTNVRIGSTIFGERDY 252



 Score = 67.0 bits (162), Expect(2) = 8e-34
 Identities = 38/74 (51%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
 Frame = -1

Query: 698 KAPQLPEDIRWHFVGHLQSNKVKSLLAAVPNLDMVEGVGNEKIANHLDRAVVSLGR-EPL 522
           K   L  +I+WHF+GHLQ   V  L+ AVPNL M+E V + K+A+ ++ +    G  E L
Sbjct: 81  KILSLCPEIKWHFIGHLQKQNVNKLM-AVPNLFMLETVDSVKLADKVNSSWQRKGSPERL 139

Query: 521 KVMVQVNTSGEESK 480
           KVMVQ+NTSGEESK
Sbjct: 140 KVMVQINTSGEESK 153

>YU68_CAEEL (P52057) Hypothetical UPF0001 protein F09E5.8 in chromosome II|
          Length = 244

 Score = 70.5 bits (171), Expect(2) = 3e-23
 Identities = 42/93 (45%), Positives = 56/93 (60%), Gaps = 3/93 (3%)
 Frame = -3

Query: 465 ELAKHVKLACPNLILSGLMTIGMKDYS-STPEN--FKALVNCKLEVCKALGIPTEQFELS 295
           +LA+ ++  C NL   G MTIG  D S ++ EN  F+ L   +    +  G   +  ELS
Sbjct: 152 KLAEFIRKECQNLKFDGFMTIGSFDNSHASGENPDFEKLFKVRQTWAEQTGESADSVELS 211

Query: 294 MGMSGDFEQAIELGSTNVRVGSTIFGPREYPNQ 196
           MGMS DF QAI  G+T+VRVGS +FG REY N+
Sbjct: 212 MGMSDDFLQAIHQGATSVRVGSKLFGAREYKNK 244



 Score = 58.2 bits (139), Expect(2) = 3e-23
 Identities = 33/68 (48%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
 Frame = -1

Query: 677 DIRWHFVGHLQSNKVKSLLAAVPNLDMVEGVGNEKIANHLDRAVVSLGR--EPLKVMVQV 504
           DIRWHF+G +QSNK+  +  + P L  VE V  EK A   D+     G    PL+V+VQV
Sbjct: 76  DIRWHFIGQVQSNKIGKICNS-PGLWCVETVETEKHARIFDKEWSKHGANLSPLRVLVQV 134

Query: 503 NTSGEESK 480
           NTSGE++K
Sbjct: 135 NTSGEDNK 142

>YBD6_YEAST (P38197) Hypothetical UPF0001 protein YBL036c|
          Length = 257

 Score = 60.8 bits (146), Expect(2) = 6e-19
 Identities = 36/77 (46%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
 Frame = -1

Query: 704 VTKAPQLPEDIRWHFVGHLQSNKVKSLLAAVPNLDMVEGVGNEKIANHLD--RAVVSLGR 531
           + KA  LP+DI+WHF+G LQ+NK K  LA VPNL  VE + + K A  L+  RA      
Sbjct: 76  IEKAKLLPDDIKWHFIGGLQTNKCKD-LAKVPNLYSVETIDSLKKAKKLNESRAKFQPDC 134

Query: 530 EPLKVMVQVNTSGEESK 480
            P+   VQ+NTS E+ K
Sbjct: 135 NPILCNVQINTSHEDQK 151



 Score = 53.1 bits (126), Expect(2) = 6e-19
 Identities = 35/85 (41%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
 Frame = -3

Query: 438 CPNLILSGLMTIGMKDYS--STPEN--FKALVNCKLEVCKALGIPTEQFELSMGMSGDFE 271
           C  + L+GLMTIG  + S   + EN  F  LV  K ++    G      +LSMGMS DF 
Sbjct: 172 CKYIKLNGLMTIGSWNVSHEDSKENRDFATLVEWKKKIDAKFGT---SLKLSMGMSADFR 228

Query: 270 QAIELGSTNVRVGSTIFGPREYPNQ 196
           +AI  G+  VR+G+ IFG R   N+
Sbjct: 229 EAIRQGTAEVRIGTDIFGARPPKNE 253

>Y461_VIBCH (Q9KUQ4) Hypothetical UPF0001 protein VC0461|
          Length = 236

 Score = 55.8 bits (133), Expect(2) = 7e-17
 Identities = 34/79 (43%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
 Frame = -3

Query: 435 PNLILSGLMTI--GMKDYSSTPENFKALVNCKLEVCKALGIPTEQFELSMGMSGDFEQAI 262
           PNL L GLM+I   + DY +    F  L   + ++ +      +   LSMGMSGD + AI
Sbjct: 157 PNLTLRGLMSIPENVPDYPAQLAAFTQLAELQQQLAQKY---PQIDTLSMGMSGDMQAAI 213

Query: 261 ELGSTNVRVGSTIFGPREY 205
           E GST VR+G+ IFG R+Y
Sbjct: 214 EAGSTIVRIGTAIFGERDY 232



 Score = 51.2 bits (121), Expect(2) = 7e-17
 Identities = 31/71 (43%), Positives = 41/71 (57%)
 Frame = -1

Query: 692 PQLPEDIRWHFVGHLQSNKVKSLLAAVPNLDMVEGVGNEKIANHLDRAVVSLGREPLKVM 513
           PQL   + WHF+G LQSNK + +     + D V  +  EKIA  L      +   PL+V+
Sbjct: 74  PQLA--LEWHFIGPLQSNKTRLV---AEHFDWVHTIDREKIALRLSEQR-PVNMPPLQVL 127

Query: 512 VQVNTSGEESK 480
           +QVNTSGE SK
Sbjct: 128 IQVNTSGEASK 138

>Y090_HAEIN (P44506) UPF0001 protein HI0090|
          Length = 237

 Score = 52.0 bits (123), Expect(2) = 2e-14
 Identities = 37/89 (41%), Positives = 53/89 (59%), Gaps = 3/89 (3%)
 Frame = -3

Query: 462 LAKHVKLACPNLILSGLMTI-GMKDYSSTPEN-FKALVNCKLEVCKALGIPTEQFE-LSM 292
           LAKH++   P+L L GLM I    D  +  EN F+ ++    ++ + L  P +Q + LSM
Sbjct: 146 LAKHIE-NLPHLCLRGLMAIPAPTDNIAEQENAFRKMLELFEQLKQVL--PNQQIDTLSM 202

Query: 291 GMSGDFEQAIELGSTNVRVGSTIFGPREY 205
           GM+ D   AI+ GST VR+G+ IFG R Y
Sbjct: 203 GMTDDMPSAIKCGSTMVRIGTAIFGARNY 231



 Score = 46.6 bits (109), Expect(2) = 2e-14
 Identities = 24/66 (36%), Positives = 39/66 (59%)
 Frame = -1

Query: 677 DIRWHFVGHLQSNKVKSLLAAVPNLDMVEGVGNEKIANHLDRAVVSLGREPLKVMVQVNT 498
           ++ WHF+G LQSNK +       + D ++ +   KIA+ L+    +  + PL V++Q+N 
Sbjct: 74  NLEWHFIGPLQSNKTR---LVAEHFDWMQTLDRAKIADRLNEQRPT-NKAPLNVLIQINI 129

Query: 497 SGEESK 480
           S EESK
Sbjct: 130 SDEESK 135

>Y112_PASMU (Q9CPD5) Hypothetical UPF0001 protein PM0112|
          Length = 233

 Score = 51.2 bits (121), Expect(2) = 4e-14
 Identities = 36/90 (40%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
 Frame = -3

Query: 468 VELAKHVKLACPNLILSGLMTI-GMKDYSSTPENFKALVNCKLEVCKALGIPTEQFE-LS 295
           ++LAK ++   P+L L GLM I    D  +T E     ++   E  K   +P  Q + LS
Sbjct: 144 LDLAKQIQ-NLPHLCLRGLMAIPAPTDDLATQEQAFTQMHSLFEQLKQ-ALPDAQIDTLS 201

Query: 294 MGMSGDFEQAIELGSTNVRVGSTIFGPREY 205
           MGM+ D   AI+ GST VR+G+ IFG R+Y
Sbjct: 202 MGMTDDMASAIQCGSTMVRIGTAIFGARDY 231



 Score = 46.6 bits (109), Expect(2) = 4e-14
 Identities = 24/65 (36%), Positives = 39/65 (60%)
 Frame = -1

Query: 674 IRWHFVGHLQSNKVKSLLAAVPNLDMVEGVGNEKIANHLDRAVVSLGREPLKVMVQVNTS 495
           + WHF+G LQSNK K       + D ++ +  +KIA+ L+       ++PL V++Q+N S
Sbjct: 75  LEWHFIGPLQSNKTK---LVAEHFDWMQTLDRKKIADRLNEQRPHY-KKPLNVLIQINIS 130

Query: 494 GEESK 480
            E+SK
Sbjct: 131 DEDSK 135

>Y274_AQUAE (O66631) Hypothetical UPF0001 protein aq_274|
          Length = 228

 Score = 52.0 bits (123), Expect(2) = 2e-13
 Identities = 35/84 (41%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
 Frame = -3

Query: 444 LACPNLILSGLMTIGMKDYSSTPEN----FKALVNCKLEVCKALGIPTEQFELSMGMSGD 277
           L  PN+ + GLMTI    Y   PE+    F+ L   + E+ +   +      LSMGMS D
Sbjct: 149 LELPNVKVLGLMTI--PPYLENPEDVRPYFRKLRELRDELQREYNVALPH--LSMGMSHD 204

Query: 276 FEQAIELGSTNVRVGSTIFGPREY 205
           FE AIE G+T VR+G+ +FG R+Y
Sbjct: 205 FEVAIEEGATIVRIGTLLFGERKY 228



 Score = 43.5 bits (101), Expect(2) = 2e-13
 Identities = 21/66 (31%), Positives = 37/66 (56%)
 Frame = -1

Query: 677 DIRWHFVGHLQSNKVKSLLAAVPNLDMVEGVGNEKIANHLDRAVVSLGREPLKVMVQVNT 498
           D+ WHF+G LQ+NKVK L+  V    ++  +  + +A+ + +           V+++VN 
Sbjct: 72  DLEWHFIGRLQTNKVKYLMGKVV---LIHSLDRKNLADEIQKRAFK-NNIVQDVLIEVNV 127

Query: 497 SGEESK 480
            GEE+K
Sbjct: 128 GGEETK 133

>Y394_PSEAE (P24562) Hypothetical UPF0001 protein PA0394|
          Length = 230

 Score = 45.8 bits (107), Expect(2) = 5e-12
 Identities = 35/86 (40%), Positives = 46/86 (53%)
 Frame = -3

Query: 462 LAKHVKLACPNLILSGLMTIGMKDYSSTPENFKALVNCKLEVCKALGIPTEQFELSMGMS 283
           LA+ VK   PNL L GLM I         ++       +L +   LG+ T    LSMGMS
Sbjct: 145 LAEAVK-QLPNLRLRGLMAIPEPTAERAAQHAAFARLRELLLDLNLGLDT----LSMGMS 199

Query: 282 GDFEQAIELGSTNVRVGSTIFGPREY 205
            D E AI  G+T VR+G+ +FG R+Y
Sbjct: 200 DDLEAAIGEGATWVRIGTALFGARDY 225



 Score = 44.7 bits (104), Expect(2) = 5e-12
 Identities = 26/65 (40%), Positives = 34/65 (52%)
 Frame = -1

Query: 674 IRWHFVGHLQSNKVKSLLAAVPNLDMVEGVGNEKIANHLDRAVVSLGREPLKVMVQVNTS 495
           + WHF+G +QSNK + +     +   V  V   KIA  L     + G  PL V +QVN S
Sbjct: 74  LNWHFIGPIQSNKTRPI---AEHFQWVHSVDRLKIAQRLSEQRPA-GLPPLNVCLQVNVS 129

Query: 494 GEESK 480
           GE SK
Sbjct: 130 GEASK 134

>YGGS_ECOLI (P67080) Hypothetical UPF0001 protein yggS|
          Length = 234

 Score = 45.1 bits (105), Expect(2) = 3e-10
 Identities = 39/97 (40%), Positives = 52/97 (53%), Gaps = 8/97 (8%)
 Frame = -3

Query: 471 GVELAKHVKLAC-----PNLILSGLMTIGMKDYSSTPENFKALVNCKLEVCKALGIPTEQ 307
           G++LA+  +LA      P L L GLM I   + S     F+  V  ++ V  A G+ T  
Sbjct: 139 GIQLAELDELAAAVAELPRLRLRGLMAIPAPE-SEYVRQFE--VARQMAVAFA-GLKTRY 194

Query: 306 FE---LSMGMSGDFEQAIELGSTNVRVGSTIFGPREY 205
                LS+GMS D E AI  GST VR+G+ IFG R+Y
Sbjct: 195 PHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDY 231



 Score = 39.3 bits (90), Expect(2) = 3e-10
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = -1

Query: 674 IRWHFVGHLQSNKVKSLLAAVPNLDMVEGVGNEKIANHL-DRAVVSLGREPLKVMVQVNT 498
           + WHF+G LQSNK +       + D    +   +IA  L D+    L   PL V++Q+N 
Sbjct: 77  LEWHFIGPLQSNKSR---LVAEHFDWCHTIDRLRIATRLNDQRPAEL--PPLNVLIQINI 131

Query: 497 SGEESK 480
           S E SK
Sbjct: 132 SDENSK 137

>YGGS_ECOL6 (P67081) Hypothetical UPF0001 protein yggS|
          Length = 234

 Score = 45.1 bits (105), Expect(2) = 3e-10
 Identities = 39/97 (40%), Positives = 52/97 (53%), Gaps = 8/97 (8%)
 Frame = -3

Query: 471 GVELAKHVKLAC-----PNLILSGLMTIGMKDYSSTPENFKALVNCKLEVCKALGIPTEQ 307
           G++LA+  +LA      P L L GLM I   + S     F+  V  ++ V  A G+ T  
Sbjct: 139 GIQLAELDELAAAVAELPRLRLRGLMAIPAPE-SEYVRQFE--VARQMAVAFA-GLKTRY 194

Query: 306 FE---LSMGMSGDFEQAIELGSTNVRVGSTIFGPREY 205
                LS+GMS D E AI  GST VR+G+ IFG R+Y
Sbjct: 195 PHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDY 231



 Score = 39.3 bits (90), Expect(2) = 3e-10
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = -1

Query: 674 IRWHFVGHLQSNKVKSLLAAVPNLDMVEGVGNEKIANHL-DRAVVSLGREPLKVMVQVNT 498
           + WHF+G LQSNK +       + D    +   +IA  L D+    L   PL V++Q+N 
Sbjct: 77  LEWHFIGPLQSNKSR---LVAEHFDWCHTIDRLRIATRLNDQRPAEL--PPLNVLIQINI 131

Query: 497 SGEESK 480
           S E SK
Sbjct: 132 SDENSK 137

>YGGS_ECO57 (P67082) Hypothetical UPF0001 protein yggS|
          Length = 234

 Score = 45.1 bits (105), Expect(2) = 3e-10
 Identities = 39/97 (40%), Positives = 52/97 (53%), Gaps = 8/97 (8%)
 Frame = -3

Query: 471 GVELAKHVKLAC-----PNLILSGLMTIGMKDYSSTPENFKALVNCKLEVCKALGIPTEQ 307
           G++LA+  +LA      P L L GLM I   + S     F+  V  ++ V  A G+ T  
Sbjct: 139 GIQLAELDELAAAVAELPRLRLRGLMAIPAPE-SEYVRQFE--VARQMAVAFA-GLKTRY 194

Query: 306 FE---LSMGMSGDFEQAIELGSTNVRVGSTIFGPREY 205
                LS+GMS D E AI  GST VR+G+ IFG R+Y
Sbjct: 195 PHIDTLSLGMSDDMEAAIAAGSTMVRIGTAIFGARDY 231



 Score = 39.3 bits (90), Expect(2) = 3e-10
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = -1

Query: 674 IRWHFVGHLQSNKVKSLLAAVPNLDMVEGVGNEKIANHL-DRAVVSLGREPLKVMVQVNT 498
           + WHF+G LQSNK +       + D    +   +IA  L D+    L   PL V++Q+N 
Sbjct: 77  LEWHFIGPLQSNKSR---LVAEHFDWCHTIDRLRIATRLNDQRPAEL--PPLNVLIQINI 131

Query: 497 SGEESK 480
           S E SK
Sbjct: 132 SDENSK 137

>Y395_HELPY (O25156) Hypothetical UPF0001 protein HP0395|
          Length = 222

 Score = 41.6 bits (96), Expect(2) = 7e-10
 Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 9/94 (9%)
 Frame = -3

Query: 474 KGVELAKHVKLACPNLILSGLMTIGM---------KDYSSTPENFKALVNCKLEVCKALG 322
           + +E+   +   C +L L GLM IG          K + +T + F  + N  +       
Sbjct: 141 EALEIYSQISETCKHLKLKGLMCIGAHTDDEKEIEKSFITTKKLFDQIKNASV------- 193

Query: 321 IPTEQFELSMGMSGDFEQAIELGSTNVRVGSTIF 220
                  LSMGMS DFE AI  G+  +R+GS +F
Sbjct: 194 -------LSMGMSDDFELAIACGANLLRIGSFLF 220



 Score = 41.6 bits (96), Expect(2) = 7e-10
 Identities = 23/65 (35%), Positives = 39/65 (60%)
 Frame = -1

Query: 674 IRWHFVGHLQSNKVKSLLAAVPNLDMVEGVGNEKIANHLDRAVVSLGREPLKVMVQVNTS 495
           + WH +G LQ NK+ +LL+  P L  +  + + K+A  +++    LG   L  ++QVN++
Sbjct: 73  LEWHMIGSLQENKINALLSLKPAL--LHSLDSLKLALKIEKRCEILGVN-LNALLQVNSA 129

Query: 494 GEESK 480
            EESK
Sbjct: 130 YEESK 134

>Y395_HELPJ (Q9ZKF2) Hypothetical UPF0001 protein jhp_0986|
          Length = 222

 Score = 41.6 bits (96), Expect(2) = 9e-10
 Identities = 23/65 (35%), Positives = 39/65 (60%)
 Frame = -1

Query: 674 IRWHFVGHLQSNKVKSLLAAVPNLDMVEGVGNEKIANHLDRAVVSLGREPLKVMVQVNTS 495
           + WH +G LQ NK+ +LL+  P L  +  + + K+A  +++    LG   L  ++QVN++
Sbjct: 73  LEWHMIGSLQENKINALLSLKPAL--LHSLDSLKLALKIEKRCEILGVN-LNALLQVNSA 129

Query: 494 GEESK 480
            EESK
Sbjct: 130 YEESK 134



 Score = 41.2 bits (95), Expect(2) = 9e-10
 Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 9/94 (9%)
 Frame = -3

Query: 474 KGVELAKHVKLACPNLILSGLMTIGM---------KDYSSTPENFKALVNCKLEVCKALG 322
           + +E    +   C  L L GLM IG          K +++T + F  + N  +       
Sbjct: 141 EALETYSQISETCKRLKLKGLMCIGAHTDDETKIEKSFTTTKKLFDQIKNASV------- 193

Query: 321 IPTEQFELSMGMSGDFEQAIELGSTNVRVGSTIF 220
                  LSMGMS DFE AI  G+  +R+GS +F
Sbjct: 194 -------LSMGMSDDFELAIACGANLLRIGSFLF 220

>YLME_BACSU (O31727) Hypothetical UPF0001 protein ylmE|
          Length = 230

 Score = 45.4 bits (106), Expect(2) = 1e-09
 Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
 Frame = -3

Query: 432 NLILSGLMTIG--MKDYSSTPENFKALVNCKLEVCKALGIPTEQFELSMGMSGDFEQAIE 259
           +++++GLMT+     D       F++L   + +V K         ELSMGMS DFE AIE
Sbjct: 149 HILVAGLMTMAPLTDDQDQIRSCFRSLRELRDQVQKLNQPNAPCTELSMGMSNDFEIAIE 208

Query: 258 LGSTNVRVGSTIFG 217
            G+T +R+GS++ G
Sbjct: 209 EGATYIRIGSSLVG 222



 Score = 37.0 bits (84), Expect(2) = 1e-09
 Identities = 21/63 (33%), Positives = 33/63 (52%)
 Frame = -1

Query: 668 WHFVGHLQSNKVKSLLAAVPNLDMVEGVGNEKIANHLDRAVVSLGREPLKVMVQVNTSGE 489
           WHF+G LQS K KS++ +V  +  ++ +        L + +       ++  VQVNTS E
Sbjct: 74  WHFIGSLQSRKAKSVVNSVSYIHSLDRLS-------LAKEIEKRAEGTVRCFVQVNTSLE 126

Query: 488 ESK 480
            SK
Sbjct: 127 PSK 129

>Y919_MYCLE (Q9CCE2) Hypothetical UPF0001 protein ML0919|
          Length = 257

 Score = 41.6 bits (96), Expect(2) = 2e-09
 Identities = 29/73 (39%), Positives = 40/73 (54%)
 Frame = -3

Query: 432 NLILSGLMTIGMKDYSSTPENFKALVNCKLEVCKALGIPTEQFELSMGMSGDFEQAIELG 253
           +L L GLM  G+      P+  +A    +LE  + L    +   LS GMS DFE A++ G
Sbjct: 183 SLELVGLM--GIPPLGWNPD--QAFEQLRLEHRRVLRSHPDAIGLSAGMSNDFEIAVKHG 238

Query: 252 STNVRVGSTIFGP 214
           ST VRVG+ + GP
Sbjct: 239 STCVRVGTALLGP 251



 Score = 40.0 bits (92), Expect(2) = 2e-09
 Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
 Frame = -1

Query: 674 IRWHFVGHLQSNKVKSLLAAVPNLDMVEGVGNEKIANHLDRAVVSL---GR--EPLKVMV 510
           I WH VG +Q NKV+SL         ++ +   ++   LDRAV +    GR  +PL+V V
Sbjct: 94  IHWHMVGQIQRNKVRSLAQWAHTAHSIDSL---QLVAALDRAVAAALAGGRREQPLQVYV 150

Query: 509 QVNTSGEESK 480
           Q++  G+ S+
Sbjct: 151 QISLDGDISR 160

>YPI1_VIBAL (P52055) Hypothetical UPF0001 protein in pilT-proC intergenic|
           region (ORF1)
          Length = 233

 Score = 58.9 bits (141), Expect = 1e-08
 Identities = 43/104 (41%), Positives = 53/104 (50%), Gaps = 2/104 (1%)
 Frame = -3

Query: 510 ASKH*WRRIKTFKGVELAKHVKLACPNLILSGLMTI--GMKDYSSTPENFKALVNCKLEV 337
           ASK      + F+  EL   +    PNL L GLM+I   + DY S    F+ L   K  +
Sbjct: 136 ASKSGVTEAEVFELAELISRL----PNLTLRGLMSIPANVSDYESQLHEFQKLATLKQTL 191

Query: 336 CKALGIPTEQFELSMGMSGDFEQAIELGSTNVRVGSTIFGPREY 205
                   E   LSMGMSGD   AIE GST VR+G+ IFG R+Y
Sbjct: 192 EAQF---PEIDTLSMGMSGDMTAAIEAGSTMVRIGTAIFGARDY 232



 Score = 48.5 bits (114), Expect = 2e-05
 Identities = 28/65 (43%), Positives = 39/65 (60%)
 Frame = -1

Query: 674 IRWHFVGHLQSNKVKSLLAAVPNLDMVEGVGNEKIANHLDRAVVSLGREPLKVMVQVNTS 495
           I WHF+G +QSNK + +     + D V  +   KIA  L+    S   +PL+V++QVNTS
Sbjct: 78  IEWHFIGPIQSNKSRLV---AEHFDWVHTIDRTKIAQRLNDQRPS-ELKPLQVLIQVNTS 133

Query: 494 GEESK 480
           GE SK
Sbjct: 134 GEASK 138

>Y531_BUCAP (Q8K929) Hypothetical UPF0001 protein BUsg531|
          Length = 229

 Score = 42.4 bits (98), Expect(2) = 2e-05
 Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
 Frame = -1

Query: 680 EDIRWHFVGHLQSNKVKSLLAAVPNLDMVEGVGNEKIANHLDRAVVSLGRE----PLKVM 513
           ++I WHF+G +QSNK K +     N D  + +  EKIA  L++      RE    P+ V+
Sbjct: 73  QNIIWHFIGKVQSNKTKII---AENFDWCQTIDREKIAILLNKY-----REKKSFPMNVL 124

Query: 512 VQVNTSGEESK 480
           +Q+N S E +K
Sbjct: 125 MQINISNEVTK 135



 Score = 25.8 bits (55), Expect(2) = 2e-05
 Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
 Frame = -3

Query: 486 IKTFKGVELAKHVKLACPNLILSGLMTIGM--KDYSSTPENFKALVNCKLEVCKAL-GIP 316
           IK +K  +LAK + L  PNL   G+M +    K      +N+K       E+ K    I 
Sbjct: 140 IKNYK--KLAKTISLM-PNLNFRGIMMMPEVEKKMIKQNDNYKNGNFIFNELKKEYQSID 196

Query: 315 TEQFELSMGMSGDFEQAIELGSTNVRVGSTIF 220
           T    LS+G S D E A+   S  +R+G  IF
Sbjct: 197 T----LSLGTSFDIENALLFHSNMIRIGRFIF 224

>Y556_SYNY3 (P52056) Hypothetical UPF0001 protein slr0556|
          Length = 218

 Score = 46.2 bits (108), Expect = 1e-04
 Identities = 30/76 (39%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
 Frame = -1

Query: 680 EDIRWHFVGHLQSNKVKSLLAAVPNLDMVEGVGNEKIANHLDRAVVSLGREP-----LKV 516
           +DI WHF+G LQSNK + +   V N   +  V N  IA  LDR    L + P     +K+
Sbjct: 62  QDINWHFIGRLQSNKARKV---VENFTYIHSVDNLAIAVKLDRIAEELNKFPQGLLQIKL 118

Query: 515 MVQVNTSG---EESKL 477
           +   N SG   EE KL
Sbjct: 119 LPDENKSGWTREELKL 134



 Score = 42.4 bits (98), Expect = 0.001
 Identities = 18/31 (58%), Positives = 25/31 (80%)
 Frame = -3

Query: 303 ELSMGMSGDFEQAIELGSTNVRVGSTIFGPR 211
           ELSMGMSGD+ +AI  G+T +R+G+ +FG R
Sbjct: 187 ELSMGMSGDYPEAIAAGATMIRLGTILFGDR 217

>Y549_BUCAI (P57614) Hypothetical UPF0001 protein BU549|
          Length = 200

 Score = 38.9 bits (89), Expect(2) = 2e-04
 Identities = 22/64 (34%), Positives = 34/64 (53%)
 Frame = -1

Query: 680 EDIRWHFVGHLQSNKVKSLLAAVPNLDMVEGVGNEKIANHLDRAVVSLGREPLKVMVQVN 501
           ++I WHF+G +QSNK K +     N    + V  EKIA  L++        P+ V++Q+N
Sbjct: 48  KNITWHFIGKIQSNKTKKI---AQNFSWCQTVDREKIAVLLNK-FRPKNLPPINVLIQIN 103

Query: 500 TSGE 489
              E
Sbjct: 104 NLKE 107



 Score = 25.8 bits (55), Expect(2) = 2e-04
 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
 Frame = -3

Query: 465 ELAKHVKLACPNLILSGLMTI-----GMKDYSSTPENFKALVNCKLEVCKALGIPTEQFE 301
           ELA+ + L+ PNL L G+M +      + + +   E  K + N       ++        
Sbjct: 119 ELAQLI-LSMPNLNLRGIMAVPSIKTNVIENNLQYEKIKTIFNRFKRQYSSVDT------ 171

Query: 300 LSMGMSGDFEQAIELGSTNVRVGSTIF 220
           LS+G S D ++++   S  VR+G  IF
Sbjct: 172 LSLGTSVDIKESLLATSNMVRIGRNIF 198

>Y2172_MYCBO (P67084) Hypothetical UPF0001 protein Mb2172c|
          Length = 258

 Score = 38.5 bits (88), Expect = 0.020
 Identities = 18/30 (60%), Positives = 22/30 (73%)
 Frame = -3

Query: 300 LSMGMSGDFEQAIELGSTNVRVGSTIFGPR 211
           LS GMS D E A++ GST VRVG+ + GPR
Sbjct: 224 LSAGMSNDLEVAVKHGSTCVRVGTALLGPR 253



 Score = 37.0 bits (84), Expect = 0.059
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
 Frame = -1

Query: 674 IRWHFVGHLQSNKVKSLLAAVPNLDMVEGVGNEKIANHLDRAVVSL-----GREPLKVMV 510
           + WH VG +Q NK  SL            V + ++   LDRAVV+        E L+V V
Sbjct: 95  VHWHMVGRIQRNKAGSLARWA---HTAHSVDSSRLVTALDRAVVAALAEHRRGERLRVYV 151

Query: 509 QVNTSGEESK 480
           QV+  G+ S+
Sbjct: 152 QVSLDGDGSR 161

>Y2148_MYCTU (P67083) Hypothetical UPF0001 protein Rv2148c/MT2207|
          Length = 258

 Score = 38.5 bits (88), Expect = 0.020
 Identities = 18/30 (60%), Positives = 22/30 (73%)
 Frame = -3

Query: 300 LSMGMSGDFEQAIELGSTNVRVGSTIFGPR 211
           LS GMS D E A++ GST VRVG+ + GPR
Sbjct: 224 LSAGMSNDLEVAVKHGSTCVRVGTALLGPR 253



 Score = 37.0 bits (84), Expect = 0.059
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
 Frame = -1

Query: 674 IRWHFVGHLQSNKVKSLLAAVPNLDMVEGVGNEKIANHLDRAVVSL-----GREPLKVMV 510
           + WH VG +Q NK  SL            V + ++   LDRAVV+        E L+V V
Sbjct: 95  VHWHMVGRIQRNKAGSLARWA---HTAHSVDSSRLVTALDRAVVAALAEHRRGERLRVYV 151

Query: 509 QVNTSGEESK 480
           QV+  G+ S+
Sbjct: 152 QVSLDGDGSR 161

>Y1368_DEIRA (Q9RUL6) Hypothetical UPF0001 protein DR1368|
          Length = 209

 Score = 37.7 bits (86), Expect = 0.034
 Identities = 17/28 (60%), Positives = 22/28 (78%)
 Frame = -3

Query: 303 ELSMGMSGDFEQAIELGSTNVRVGSTIF 220
           ELSMGMSGD+  A+  G+T VRVG ++F
Sbjct: 181 ELSMGMSGDYPLAVAAGATLVRVGRSLF 208



 Score = 31.6 bits (70), Expect = 2.5
 Identities = 18/65 (27%), Positives = 31/65 (47%)
 Frame = -1

Query: 668 WHFVGHLQSNKVKSLLAAVPNLDMVEGVGNEKIANHLDRAVVSLGREPLKVMVQVNTSGE 489
           WHF+G LQ NK+K L      + +V  +     A  +  A    G+ P  ++ + N  G+
Sbjct: 70  WHFIGPLQRNKIKYL----RGVTLVHSIEEPWQAQAIADAAAEWGQAPAVLLQRHNGEGQ 125

Query: 488 ESKLL 474
           +  +L
Sbjct: 126 KHGVL 130

>Y2153_CORGL (O24748) Hypothetical UPF0001 protein Cgl2153/cg2364|
          Length = 221

 Score = 36.2 bits (82), Expect = 0.10
 Identities = 19/31 (61%), Positives = 21/31 (67%)
 Frame = -3

Query: 303 ELSMGMSGDFEQAIELGSTNVRVGSTIFGPR 211
           E S GMSGD   AI+ GST VRVG+ I G R
Sbjct: 188 EFSAGMSGDLVAAIKHGSTIVRVGTEILGNR 218

>IMDH_HELPY (P56088) Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) (IMP|
           dehydrogenase) (IMPDH) (IMPD)
          Length = 481

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 25/79 (31%), Positives = 39/79 (49%)
 Frame = -3

Query: 438 CPNLILSGLMTIGMKDYSSTPENFKALVNCKLEVCKALGIPTEQFELSMGMSGDFEQAIE 259
           C   I++G   +GM   S       A+ NC +EV     IP    +  +  SGD  +A+ 
Sbjct: 300 CTTRIVAG---VGMPQVS-------AIDNC-VEVASKFDIPVIA-DGGIRYSGDVAKALA 347

Query: 258 LGSTNVRVGSTIFGPREYP 202
           LG+++V +GS + G  E P
Sbjct: 348 LGASSVMIGSLLAGTEESP 366

>IMDH_HELPJ (Q9ZL14) Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) (IMP|
           dehydrogenase) (IMPDH) (IMPD)
          Length = 481

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 25/79 (31%), Positives = 39/79 (49%)
 Frame = -3

Query: 438 CPNLILSGLMTIGMKDYSSTPENFKALVNCKLEVCKALGIPTEQFELSMGMSGDFEQAIE 259
           C   I++G   +GM   S       A+ NC +EV     IP    +  +  SGD  +A+ 
Sbjct: 300 CTTRIVAG---VGMPQVS-------AIDNC-VEVASKFDIPVIA-DGGIRYSGDVAKALA 347

Query: 258 LGSTNVRVGSTIFGPREYP 202
           LG+++V +GS + G  E P
Sbjct: 348 LGASSVMIGSLLAGTEESP 366

>PURA_NEIMB (Q9K012) Adenylosuccinate synthetase (EC 6.3.4.4) (IMP--aspartate|
           ligase) (AdSS) (AMPSase)
          Length = 432

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -3

Query: 408 TIGMKDYSSTPENFKALVNCKLEVCKA 328
           T G+KDY + PEN KA +    EVC A
Sbjct: 384 TFGVKDYGALPENAKAYLKRIEEVCGA 410

>PCLO_CHICK (Q9PU36) Protein piccolo (Aczonin) (Fragment)|
          Length = 5120

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 20/48 (41%), Positives = 23/48 (47%)
 Frame = -3

Query: 465 ELAKHVKLACPNLILSGLMTIGMKDYSSTPENFKALVNCKLEVCKALG 322
           E A   K++CP L  +GL  IG KD    P NF     CK  VC   G
Sbjct: 827 EKASQPKVSCP-LCKTGL-NIGSKD----PPNFNTCTECKKVVCNLCG 868

>YAD4_SCHPO (Q09830) Hypothetical protein C4G8.04 in chromosome I|
          Length = 772

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +2

Query: 212 LGPNIVDPTLTF-VLPSSIACSKSPDIPMDSSNCSVGIPRALQTSSLQFTSALK 370
           L P+ + P L    L  +++ S S D+P D ++ S       + SSL+ TS+LK
Sbjct: 185 LSPSSLVPLLKLPALDHAVSSSSSSDLPSDPNSASYIASSKQKASSLKLTSSLK 238

>Y497_BUCBP (Q89A48) Hypothetical UPF0001 protein bbp_497|
          Length = 223

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 13/27 (48%), Positives = 20/27 (74%)
 Frame = -3

Query: 300 LSMGMSGDFEQAIELGSTNVRVGSTIF 220
           +S+G S D + A+  GST +R+GS+IF
Sbjct: 195 VSLGTSHDIQAALYSGSTLLRIGSSIF 221


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,818,146
Number of Sequences: 219361
Number of extensions: 1950928
Number of successful extensions: 5171
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 5020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5158
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7082949625
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)