ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal7a16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PURL_CORGL (Q8NMI5) Phosphoribosylformylglycinamidine synthase I... 31 2.7
2PURL_COREF (Q8FMM3) Phosphoribosylformylglycinamidine synthase I... 31 3.5
3MUA1_XENLA (P10667) Integumentary mucin A.1 precursor (FIM-A.1) ... 30 6.0
4CT096_HUMAN (Q9NUD7) Protein C20orf96 30 6.0
5DZIP3_MOUSE (Q7TPV2) Ubiquitin ligase protein DZIP3 (EC 6.3.2.-)... 30 7.9

>PURL_CORGL (Q8NMI5) Phosphoribosylformylglycinamidine synthase II (EC 6.3.5.3)|
           (FGAM synthase II)
          Length = 762

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +2

Query: 485 TVSSIGERTHERDNHGYAHSGHIFIKLTSSYLE--PVLNKASTLPHNR 622
           T + IGE T E+D +   H+G + I    S ++  PV N+    P N+
Sbjct: 354 TCAEIGEVTDEKDRYVVVHNGEVVIDAPPSTIDEGPVYNRPVARPENQ 401



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>PURL_COREF (Q8FMM3) Phosphoribosylformylglycinamidine synthase II (EC 6.3.5.3)|
           (FGAM synthase II)
          Length = 763

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +2

Query: 485 TVSSIGERTHERDNHGYAHSGHIFIKLTSSYLE--PVLNKASTLPHNR 622
           TV+ IGE T E+D +   H+G   I   +S ++  PV N+    P N+
Sbjct: 354 TVAEIGEVTDEKDRYLVVHNGQTVIDAPASTIDEGPVYNRPVERPANQ 401



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>MUA1_XENLA (P10667) Integumentary mucin A.1 precursor (FIM-A.1)|
           (Preprospasmolysin)
          Length = 400

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +3

Query: 432 TDDQKNDPEHLPTSDITPPCPRSEKELTKETITATHT 542
           T +   +P   PT+D TPP      E T ET T T T
Sbjct: 247 TPETTTEPTTTPTTDTTPPTLPPTPETTTETTTETTT 283



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>CT096_HUMAN (Q9NUD7) Protein C20orf96|
          Length = 363

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 16/65 (24%), Positives = 26/65 (40%)
 Frame = +3

Query: 138 RPGTHPRSXXXXXXQLQMNNQRARVK*PLHVPATGVVVICEPQGTQQSHFQRYQD*QSLM 317
           +P T P                 RV+   H   T VV  C+P+  ++ H +R  D   + 
Sbjct: 36  KPSTLPPVQQANSLHTSKMKTLTRVQPVFHFKPTTVVTSCQPKNPRELHRRRKLDPGKMH 95

Query: 318 GEVWL 332
            ++WL
Sbjct: 96  AKIWL 100



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>DZIP3_MOUSE (Q7TPV2) Ubiquitin ligase protein DZIP3 (EC 6.3.2.-)|
           (DAZ-interacting protein 3 homolog)
          Length = 1204

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 11/29 (37%), Positives = 23/29 (79%)
 Frame = +3

Query: 15  AQATSESISTLHNLKSKSRVRLRTKTNEK 101
           +++++ES+  L  +KSK++ + RTK+N+K
Sbjct: 643 SESSTESVKDLQEVKSKTKKKKRTKSNKK 671


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,949,711
Number of Sequences: 219361
Number of extensions: 1601018
Number of successful extensions: 3386
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3385
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5938641176
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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