>N2B_HAEIR (P46441) Putative ATPase N2B (HFN2B)|
          Length = 464

 Score = 60.8 bits (146), Expect(2) = 9e-12
 Identities = 33/116 (28%), Positives = 62/116 (53%), Gaps = 2/116 (1%)
 Frame = -3

Query: 744 ECSTVLKQKFQSLIGDEEPT--PQTVEVVMGRHLQVPLGANGCAYFRFEDLCDKPIGAAD 571
           +  + +++ F+ L   E     P+T+    GR L             FE+LC++P+G +D
Sbjct: 286 DAKSQMERMFKILCSQENDIIRPRTI-THFGRDLTFQRTCGQVLDSNFEELCNRPLGGSD 344

Query: 570 YFGLFKKFHTLAVEGVPKFGYHNRTAAYRFVTLVDVMYENKGRLLCTAEAEPIELF 403
           Y  + + FHT+ +  VP+     ++   RF+TL+D +Y+N+ R++ +AE    +LF
Sbjct: 345 YIQIGQFFHTVLIHDVPQLTLLLKSQMRRFITLIDTLYDNRVRVVISAEVPLDQLF 400



 Score = 28.9 bits (63), Expect(2) = 9e-12
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = -1

Query: 299 FAKDRTISRLTELNSREYLEDF 234
           FA DRTISRL E+  +EY E +
Sbjct: 439 FAFDRTISRLYEMQKKEYWEQW 460

>AFG1_YEAST (P32317) Protein AFG1|
          Length = 509

 Score = 57.0 bits (136), Expect = 6e-08
 Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
 Frame = -3

Query: 666 VMGRHLQVP-LGANGCAYFRFEDLCDKPIGAADYFGLFKKFHTLAVEGVPKFGYHNRTAA 490
           + GR  +VP       A F F+ LC +P+ A DY  L K F    V  +P    + R   
Sbjct: 344 IWGREFKVPKCTPPRVAQFTFKQLCGEPLAAGDYLTLAKNFEAFIVTDIPYLSIYVRDEV 403

Query: 489 YRFVTLVDVMYENKGRLLCTAEAEPIELF 403
            RF+T +D +Y++ G+L  T  A+   LF
Sbjct: 404 RRFITFLDAVYDSGGKLATTGAADFSSLF 432

>YHCM_ECOLI (P64612) Hypothetical protein yhcM|
          Length = 375

 Score = 41.6 bits (96), Expect(2) = 9e-05
 Identities = 23/70 (32%), Positives = 34/70 (48%)
 Frame = -3

Query: 609 FEDLCDKPIGAADYFGLFKKFHTLAVEGVPKFGYHNRTAAYRFVTLVDVMYENKGRLLCT 430
           F  LC       DY  L + FHT+ +  VP       + A RF+ LVD  YE   +L+ +
Sbjct: 275 FTTLCVDARSQHDYIALSRLFHTVMLFDVPVMTRLMESEARRFIALVDEFYERHVKLVVS 334

Query: 429 AEAEPIELFE 400
           AE    E+++
Sbjct: 335 AEVPLYEIYQ 344



 Score = 24.3 bits (51), Expect(2) = 9e-05
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 311 NELGFAKDRTISRLTELNSREYLE 240
           + L F   R +SRL E+ S EYL+
Sbjct: 346 DRLKFEFQRCLSRLQEMQSEEYLK 369

>YHCM_ECO57 (P64613) Hypothetical protein yhcM|
          Length = 375

 Score = 41.6 bits (96), Expect(2) = 9e-05
 Identities = 23/70 (32%), Positives = 34/70 (48%)
 Frame = -3

Query: 609 FEDLCDKPIGAADYFGLFKKFHTLAVEGVPKFGYHNRTAAYRFVTLVDVMYENKGRLLCT 430
           F  LC       DY  L + FHT+ +  VP       + A RF+ LVD  YE   +L+ +
Sbjct: 275 FTTLCVDARSQHDYIALSRLFHTVMLFDVPVMTRLMESEARRFIALVDEFYERHVKLVVS 334

Query: 429 AEAEPIELFE 400
           AE    E+++
Sbjct: 335 AEVPLYEIYQ 344



 Score = 24.3 bits (51), Expect(2) = 9e-05
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 311 NELGFAKDRTISRLTELNSREYLE 240
           + L F   R +SRL E+ S EYL+
Sbjct: 346 DRLKFEFQRCLSRLQEMQSEEYLK 369


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,045,150
Number of Sequences: 219361
Number of extensions: 2166040
Number of successful extensions: 4601
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4601
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7932903580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)