>LMO6_HUMAN (O43900) LIM domain only protein 6 (Triple LIM domain protein 6)|
          Length = 615

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -2

Query: 268 RRPSQQPPRAASRRLSQSHGSLRRGSRAPSQQQQ-KTDNGS 149
           RRP   PPRA SRR    H      +R PS+++  + D GS
Sbjct: 498 RRPRSPPPRAPSRRRHHHHNHHHHHNRHPSRRRHYQCDAGS 538

>DBH_MYCSM (Q9ZHC5) DNA-binding protein HU homolog (Histone-like protein)|
           (Hlp)
          Length = 208

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 18/67 (26%), Positives = 24/67 (35%)
 Frame = -1

Query: 365 ASLKAVKPTGLEGQAKEPTKVSATKGPAKLSNTXXXXXXXXXXXXXXXXKPREPKKRVKS 186
           A   A K    +   K P K +ATK PAK + T                  + P K+  +
Sbjct: 139 AKKAATKAPAKKAATKAPAKKAATKAPAKKAATKAPAKKAAAKAPAKKAATKAPAKKAAA 198

Query: 185 TKPAAAK 165
            K  A K
Sbjct: 199 KKAPAKK 205



 Score = 28.5 bits (62), Expect = 6.7
 Identities = 16/60 (26%), Positives = 22/60 (36%)
 Frame = -1

Query: 353 AVKPTGLEGQAKEPTKVSATKGPAKLSNTXXXXXXXXXXXXXXXXKPREPKKRVKSTKPA 174
           A K    +   K P K +ATK PAK + T                  + P K+  +  PA
Sbjct: 134 AKKAPAKKAATKAPAKKAATKAPAKKAATKAPAKKAATKAPAKKAAAKAPAKKAATKAPA 193

>H1_ONCMY (P06350) Histone H1 [Contains: Oncorhyncin II]|
          Length = 206

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
 Frame = -1

Query: 410 ASEPSSAGTEQHIRMASLKAVKPTGLEGQAKEP-TKVSATKGPAKLSNTXXXXXXXXXXX 234
           A +P++A   +  ++A+ KAV       +AK+P T   A K P K+              
Sbjct: 122 AKKPAAAKKPK--KVAAKKAVAAKKSPKKAKKPATPKKAAKSPKKVKKPAAAAKKAA--- 176

Query: 233 XXXXXKPREPKKRVKSTKPAAAK 165
                  + PKK  K+ KP AAK
Sbjct: 177 -------KSPKKATKAAKPKAAK 192

>HNF1A_RAT (P15257) Hepatocyte nuclear factor 1-alpha (HNF-1A) (Liver-specific|
           transcription factor LF-B1) (LFB1)
          Length = 628

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 23/50 (46%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
 Frame = -1

Query: 422 ATA*ASE-PSSAGTEQHIRMASLKAVKPTGLEGQ---AKEPTKVSATKGP 285
           AT+ A+E PSS+G       A+L  V PTGLE     + E   VSAT GP
Sbjct: 326 ATSEAAEVPSSSGGPLVTVSAALHQVSPTGLEPSSLLSTEAKLVSATGGP 375

>HNF1A_MOUSE (P22361) Hepatocyte nuclear factor 1-alpha (HNF-1A) (Liver-specific|
           transcription factor LF-B1) (LFB1)
          Length = 628

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 23/50 (46%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
 Frame = -1

Query: 422 ATA*ASE-PSSAGTEQHIRMASLKAVKPTGLEGQ---AKEPTKVSATKGP 285
           AT+ A+E PSS+G       A+L  V PTGLE     + E   VSAT GP
Sbjct: 326 ATSEAAEVPSSSGGPLVTVSAALHQVSPTGLEPSSLLSTEAKLVSATGGP 375

>MPIP_YEAST (P23748) M-phase inducer phosphatase (EC 3.1.3.48) (Mitosis|
           initiation protein MIH1) (Mitotic inducer homolog)
          Length = 554

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -2

Query: 277 SVTRRPSQQPPRAASRRLSQSHGSLRRGSRAPSQQ 173
           S++R+PS      +SRR+ +  G + R SR  SQ+
Sbjct: 156 SLSRKPSMNSSSNSSRRVQRQDGKIPRSSRKSSQK 190

>EX7L_ZYMMO (Q9FDL4) Probable exodeoxyribonuclease VII large subunit (EC|
           3.1.11.6) (Exonuclease VII large subunit)
          Length = 544

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = -2

Query: 277 SVTRRPSQQPPRAASRRLSQSHGSLRRGSRAPSQQQQKTDNGSRRTELA 131
           + T RP+    R A  +   S   L  G R   Q+QQK DN +RR + A
Sbjct: 362 AATLRPALLQARIAREQARLSACRLPTGQRLVIQEQQKLDNVTRRLKQA 410

>GAG_FOAMV (P14349) Gag polyprotein (Core polyprotein) [Contains: Protease (EC|
           3.4.23.-)]
          Length = 811

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -2

Query: 271 TRRPSQQPPRAASRRLSQSHGSLRRGSRAPSQQQQKTDNG 152
           T RPSQ P  +   R   + G   RGS   +Q Q   + G
Sbjct: 496 TSRPSQGPANSGRGRQRPASGQSNRGSSTQNQNQDNLNQG 535

>TERF2_MOUSE (O35144) Telomeric repeat-binding factor 2 (TTAGGG repeat-binding|
           factor 2) (Telomeric DNA-binding protein)
          Length = 495

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = -2

Query: 259 SQQPPRAASRRLSQSHGSLRRGSRAPS-QQQQKTDNGSRRTELA*LSPWCYELYMNPA 89
           S    RAASRR S+S G  RRG   P      +   G  R E A ++ W  + Y + A
Sbjct: 8   SDSSGRAASRRASRSGGRARRGRHEPGLGGAAERGAGEARLEEA-VNRWVLKFYFHEA 64

>C71BQ_ARATH (Q9LTL0) Cytochrome P450 71B26 (EC 1.14.-.-)|
          Length = 500

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +1

Query: 286 GPLVALTL--VGSLACPSSPVGFTAFRDAILICCSVPALEG 402
           GP++ L L  V +L   SS     A RD  L CCS P+L G
Sbjct: 63  GPVMLLKLGKVPTLILSSSETAKQALRDYDLHCCSRPSLAG 103

>FILA_HUMAN (P20930) Filaggrin|
          Length = 4061

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
 Frame = -3

Query: 396  QCRNRAAYKNGIPEGREANRT*RAGQGAYQG*CH*GACKAQ*H----GDQASSRQGRHQE 229
            Q R+ A  ++G    + A+ +  +G G  Q      A +   H    G QAS  +G  ++
Sbjct: 2969 QARSSAGERHGSHHQQSADSSRHSGIGHGQAS---SAVRDSGHRGYSGSQASDNEGHSED 3025

Query: 228  G*VKATGA*EEGQEHQASSSKKLTTAAGERSLHS 127
               ++  A  +   HQ S  +     +GE S HS
Sbjct: 3026 SDTQSVSAHGQAGSHQQSHQESARGRSGETSGHS 3059



 Score = 28.1 bits (61), Expect = 8.8
 Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
 Frame = -3

Query: 396  QCRNRAAYKNGIPEGREANRT*RAGQGAYQG*CH*GACKAQ*H----GDQASSRQGRHQE 229
            Q R+ A  ++G    + A+ +  +G G  Q      A +   H    G QAS  +G  ++
Sbjct: 2645 QARSSAGERHGSHHQQSADSSRHSGIGHGQAS---SAVRDSGHRGYSGSQASDNEGHSED 2701

Query: 228  G*VKATGA*EEGQEHQASSSKKLTTAAGERSLHS 127
               ++  A  +   HQ S  +     +GE S HS
Sbjct: 2702 SDTQSVSAHGQAGSHQQSHQESARGRSGETSGHS 2735


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,164,156
Number of Sequences: 219361
Number of extensions: 1017430
Number of successful extensions: 2978
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2973
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)