Clone Information

BLAST Search Result

Clone Name	rbaal7a14
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	131	3e-27
2	gb\|AC135958.2\| Oryza sativa chromosome 3 BAC OSJNBa0059E14 genom...	131	3e-27
3	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	131	3e-27
4	ref\|XM_470038.1\| Oryza sativa (japonica cultivar-group), mRNA	129	1e-26
5	dbj\|AK070287.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	129	1e-26
6	dbj\|AK060962.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	129	1e-26
7	gb\|CP000133.1\| Rhizobium etli CFN 42, complete genome	46	0.14
8	gb\|L77117.1\| Methanocaldococcus jannaschii DSM 2661, complete ge...	44	0.54
9	gb\|AY020312.1\| Oryza sativa microsatellite MRG2637 containing (G...	42	2.1
10	emb\|BX957235.12\| Zebrafish DNA sequence from clone DKEY-84K17 in...	42	2.1
11	gb\|AC165343.3\| Mus musculus BAC clone RP23-476C24 from chromosom...	42	2.1
12	emb\|AL607001.4\|OSJN00128 Oryza sativa genomic DNA, chromosome 4,...	42	2.1
13	gb\|AC164561.2\| Mus musculus BAC clone RP23-187G5 from chromosome...	42	2.1
14	dbj\|AK055547.1\| Homo sapiens cDNA FLJ30985 fis, clone HHDPC2000462	42	2.1
15	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.1
16	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.1
17	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.1
18	gb\|AC018927.6\|AC018927 Homo sapiens chromosome 15 clone RP11-353...	42	2.1
19	dbj\|AP005116.3\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.1
20	dbj\|AP003708.2\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.1
21	emb\|CT033780.10\| Mouse DNA sequence from clone RP24-329E14 on ch...	42	2.1
22	gb\|AC117819.11\| Mus musculus chromosome 1, clone RP24-576P17, co...	40	8.4
23	ref\|XM_520379.1\| PREDICTED: Pan troglodytes LOC464874 (LOC464874...	40	8.4
24	gb\|AC151571.1\| Latimeria menadoensis clone VMRC4-140H19, complet...	40	8.4
25	gb\|AC158556.9\| Mus musculus chromosome 15, clone RP23-140F20, co...	40	8.4
26	gb\|AC100208.16\| Mus musculus chromosome 7, clone RP23-59J14, com...	40	8.4
27	emb\|Z78541.1\|CEF19D8 Caenorhabditis elegans Cosmid F19D8, comple...	40	8.4
28	gb\|AC129300.3\| Mus musculus BAC clone RP24-427A8 from chromosome...	40	8.4
29	gb\|AC116179.6\| Mus musculus BAC clone RP23-272C6 from 10, comple...	40	8.4
30	gb\|AC116033.3\| Zea mays genomic clone ZM15C05 sequence, complete...	40	8.4
31	gb\|AC163268.4\| Mus musculus chromosome 1, clone RP24-63C6, compl...	40	8.4
32	gb\|BC064582.1\| Homo sapiens KIAA1984, mRNA (cDNA clone IMAGE:574...	40	8.4
33	emb\|AL355987.31\| Human DNA sequence from clone RP11-216L13 on ch...	40	8.4
34	ref\|XM_779451.1\| PREDICTED: Strongylocentrotus purpuratus simila...	40	8.4
35	emb\|AL731600.3\|OSJN00243 Oryza sativa genomic DNA, chromosome 4,...	40	8.4
36	emb\|AL606621.3\|OSJN00054 Oryza sativa genomic DNA, chromosome 4,...	40	8.4
37	emb\|AL731658.20\| Mouse DNA sequence from clone RP23-329P17 on ch...	40	8.4
38	gb\|AC023102.6\| Homo sapiens chromosome 8, clone RP11-414L17, com...	40	8.4
39	gb\|AC114740.4\| Homo sapiens BAC clone RP11-33G14 from 4, complet...	40	8.4
40	dbj\|AK094220.1\| Homo sapiens cDNA FLJ36901 fis, clone BRACE2002206	40	8.4
41	dbj\|AK092639.1\| Homo sapiens cDNA FLJ35320 fis, clone PROST2012007	40	8.4
42	dbj\|AK090683.1\| Homo sapiens cDNA FLJ33364 fis, clone BRACE2005448	40	8.4
43	gb\|AC112173.3\| Homo sapiens chromosome 5 clone CTD-2275D10, comp...	40	8.4
44	ref\|NM_001039374.3\| Homo sapiens KIAA1984 (KIAA1984), mRNA	40	8.4
45	gb\|AC113143.3\| Homo sapiens chromosome 8, clone RP11-33I11, comp...	40	8.4
46	gb\|AC093251.2\| Homo sapiens chromosome 5 clone RP11-156N15, comp...	40	8.4
47	dbj\|AK154298.1\| Mus musculus NOD-derived CD11c +ve dendritic cel...	40	8.4
48	dbj\|AK079567.1\| Mus musculus adult male hypothalamus cDNA, RIKEN...	40	8.4
49	dbj\|AP008218.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.4
50	gb\|AC095043.3\| Homo sapiens BAC clone RP11-124A7 from 4, complet...	40	8.4
51	dbj\|AB074447.1\| Macaca fascicularis testis cDNA clone:QtsA-19877...	40	8.4
52	dbj\|AP004730.2\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.4
53	dbj\|AP004328.2\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.4
54	emb\|BX469898.9\| Zebrafish DNA sequence from clone DKEY-180H12 in...	40	8.4
55	emb\|AL929533.12\| Zebrafish DNA sequence from clone DKEY-18E17 in...	40	8.4
56	gb\|DP000011.1\| Oryza sativa (japonica cultivar-group) chromosome...	40	8.4
57	emb\|AL772426.5\|CNS08CA4 Oryza sativa chromosome 12, . BAC OJ1310...	40	8.4
58	gb\|AC140402.2\| Mus musculus BAC clone RP24-90D2 from 10, complet...	40	8.4
59	emb\|AL772358.6\| Mouse DNA sequence from clone RP23-397K2 on chro...	40	8.4
60	dbj\|AB075864.1\| Homo sapiens mRNA for KIAA1984 protein	40	8.4

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  131 bits (66), Expect = 3e-27
 Identities = 111/126 (88%)
 Strand = Plus / Minus

                                                                            
Query: 335      tcagccgatcttctccgtgttggtgtcgtcggttggccagatgaccgtctccatgagcct 394
                |||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||| 
Sbjct: 33469278 tcagccaatcttctcagtgttggtgtcgtctgttggccagatgaccgtctccatgagccg 33469219

                                                                            
Query: 395      ctcccgcatcagctccaggttctcctccgagatcttctcgtacatcttcgcgtggtcgca 454
                ||| ||||||| | |||||||||| || || ||| ||||||||||| |||| ||||| ||
Sbjct: 33469218 ctctcgcatcaacgccaggttctcgtcagatatcctctcgtacatcatcgcatggtcaca 33469159

                      
Query: 455      cttctg 460
                 |||||
Sbjct: 33469158 tttctg 33469153

to top

>gb|AC135958.2| Oryza sativa chromosome 3 BAC OSJNBa0059E14 genomic sequence, complete
             sequence
          Length = 154555

 Score =  131 bits (66), Expect = 3e-27
 Identities = 111/126 (88%)
 Strand = Plus / Plus

                                                                         
Query: 335   tcagccgatcttctccgtgttggtgtcgtcggttggccagatgaccgtctccatgagcct 394
             |||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||| 
Sbjct: 28833 tcagccaatcttctcagtgttggtgtcgtctgttggccagatgaccgtctccatgagccg 28892

                                                                         
Query: 395   ctcccgcatcagctccaggttctcctccgagatcttctcgtacatcttcgcgtggtcgca 454
             ||| ||||||| | |||||||||| || || ||| ||||||||||| |||| ||||| ||
Sbjct: 28893 ctctcgcatcaacgccaggttctcgtcagatatcctctcgtacatcatcgcatggtcaca 28952

                   
Query: 455   cttctg 460
              |||||
Sbjct: 28953 tttctg 28958

to top

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  131 bits (66), Expect = 3e-27
 Identities = 111/126 (88%)
 Strand = Plus / Minus

                                                                            
Query: 335      tcagccgatcttctccgtgttggtgtcgtcggttggccagatgaccgtctccatgagcct 394
                |||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||| 
Sbjct: 33559788 tcagccaatcttctcagtgttggtgtcgtctgttggccagatgaccgtctccatgagccg 33559729

                                                                            
Query: 395      ctcccgcatcagctccaggttctcctccgagatcttctcgtacatcttcgcgtggtcgca 454
                ||| ||||||| | |||||||||| || || ||| ||||||||||| |||| ||||| ||
Sbjct: 33559728 ctctcgcatcaacgccaggttctcgtcagatatcctctcgtacatcatcgcatggtcaca 33559669

                      
Query: 455      cttctg 460
                 |||||
Sbjct: 33559668 tttctg 33559663

to top

>ref|XM_470038.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1001

 Score =  129 bits (65), Expect = 1e-26
 Identities = 104/117 (88%)
 Strand = Plus / Minus

                                                                       
Query: 335 tcagccgatcttctccgtgttggtgtcgtcggttggccagatgaccgtctccatgagcct 394
           |||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||| 
Sbjct: 609 tcagccaatcttctcagtgttggtgtcgtctgttggccagatgaccgtctccatgagccg 550

                                                                    
Query: 395 ctcccgcatcagctccaggttctcctccgagatcttctcgtacatcttcgcgtggtc 451
           ||| ||||||| | |||||||||| || || ||| ||||||||||| |||| |||||
Sbjct: 549 ctctcgcatcaacgccaggttctcgtcagatatcctctcgtacatcatcgcatggtc 493

to top

>dbj|AK070287.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023049O16, full
           insert sequence
          Length = 983

 Score =  129 bits (65), Expect = 1e-26
 Identities = 104/117 (88%)
 Strand = Plus / Minus

                                                                       
Query: 335 tcagccgatcttctccgtgttggtgtcgtcggttggccagatgaccgtctccatgagcct 394
           |||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||| 
Sbjct: 739 tcagccaatcttctcagtgttggtgtcgtctgttggccagatgaccgtctccatgagccg 680

                                                                    
Query: 395 ctcccgcatcagctccaggttctcctccgagatcttctcgtacatcttcgcgtggtc 451
           ||| ||||||| | |||||||||| || || ||| ||||||||||| |||| |||||
Sbjct: 679 ctctcgcatcaacgccaggttctcgtcagatatcctctcgtacatcatcgcatggtc 623

to top

>dbj|AK060962.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-A06, full
           insert sequence
          Length = 1220

 Score =  129 bits (65), Expect = 1e-26
 Identities = 104/117 (88%)
 Strand = Plus / Minus

                                                                       
Query: 335 tcagccgatcttctccgtgttggtgtcgtcggttggccagatgaccgtctccatgagcct 394
           |||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||| 
Sbjct: 841 tcagccaatcttctcagtgttggtgtcgtctgttggccagatgaccgtctccatgagccg 782

                                                                    
Query: 395 ctcccgcatcagctccaggttctcctccgagatcttctcgtacatcttcgcgtggtc 451
           ||| ||||||| | |||||||||| || || ||| ||||||||||| |||| |||||
Sbjct: 781 ctctcgcatcaacgccaggttctcgtcagatatcctctcgtacatcatcgcatggtc 725

to top

>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 401     catcagctccaggttctcctccg 423
               |||||||||||||||||||||||
Sbjct: 2436924 catcagctccaggttctcctccg 2436946

to top

>gb|L77117.1| Methanocaldococcus jannaschii DSM 2661, complete genome
          Length = 1664970

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 401    catcagctccaggttctcctcc 422
              ||||||||||||||||||||||
Sbjct: 315014 catcagctccaggttctcctcc 314993

to top

>gb|AY020312.1| Oryza sativa microsatellite MRG2637 containing (GA)X13, genomic
           sequence
          Length = 226

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 392 cctctcccgcatcagctccag 412
           |||||||||||||||||||||
Sbjct: 24  cctctcccgcatcagctccag 44

to top

>emb|BX957235.12| Zebrafish DNA sequence from clone DKEY-84K17 in linkage group 17,
            complete sequence
          Length = 171764

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 203  acattatatacacatgtttga 223
            |||||||||||||||||||||
Sbjct: 9661 acattatatacacatgtttga 9681

to top

>gb|AC165343.3| Mus musculus BAC clone RP23-476C24 from chromosome 17, complete
             sequence
          Length = 190724

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 231   gtgcgtgcatgcatgcatagt 251
             |||||||||||||||||||||
Sbjct: 91781 gtgcgtgcatgcatgcatagt 91801

to top

>emb|AL607001.4|OSJN00128 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088I22,
             complete sequence
          Length = 164572

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 392   cctctcccgcatcagctccag 412
             |||||||||||||||||||||
Sbjct: 33138 cctctcccgcatcagctccag 33118

to top

>gb|AC164561.2| Mus musculus BAC clone RP23-187G5 from chromosome 12, complete sequence
          Length = 210186

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 229   tcgtgcgtgcatgcatgcata 249
             |||||||||||||||||||||
Sbjct: 20422 tcgtgcgtgcatgcatgcata 20402

to top

>dbj|AK055547.1| Homo sapiens cDNA FLJ30985 fis, clone HHDPC2000462
          Length = 2386

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 403 tcagctccaggttctcctccg 423
           |||||||||||||||||||||
Sbjct: 646 tcagctccaggttctcctccg 666

to top

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 392      cctctcccgcatcagctccag 412
                |||||||||||||||||||||
Sbjct: 28757820 cctctcccgcatcagctccag 28757840



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 230      cgtgcgtgcatgcatgcata 249
                ||||||||||||||||||||
Sbjct: 19360696 cgtgcgtgcatgcatgcata 19360677

to top

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 392     cctctcccgcatcagctccag 412
               |||||||||||||||||||||
Sbjct: 2075073 cctctcccgcatcagctccag 2075093



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 205      attatatacacatgtttgactcaa 228
                |||||||||||||||||| |||||
Sbjct: 19030412 attatatacacatgtttgtctcaa 19030435

to top

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 230      cgtgcgtgcatgcatgcatag 250
                |||||||||||||||||||||
Sbjct: 22090139 cgtgcgtgcatgcatgcatag 22090159

to top

>gb|AC018927.6|AC018927 Homo sapiens chromosome 15 clone RP11-353B9 map 15q21, complete sequence
          Length = 184864

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 539    ttctcccagttggatgccaga 559
              |||||||||||||||||||||
Sbjct: 115201 ttctcccagttggatgccaga 115221

to top

>dbj|AP005116.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0703B01
          Length = 137445

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 230   cgtgcgtgcatgcatgcatag 250
             |||||||||||||||||||||
Sbjct: 64038 cgtgcgtgcatgcatgcatag 64058

to top

>dbj|AP003708.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0041F13
          Length = 163230

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 392   cctctcccgcatcagctccag 412
             |||||||||||||||||||||
Sbjct: 95935 cctctcccgcatcagctccag 95955

to top

>emb|CT033780.10| Mouse DNA sequence from clone RP24-329E14 on chromosome 12, complete
              sequence
          Length = 205515

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 229    tcgtgcgtgcatgcatgcata 249
              |||||||||||||||||||||
Sbjct: 102681 tcgtgcgtgcatgcatgcata 102661

to top

>gb|AC117819.11| Mus musculus chromosome 1, clone RP24-576P17, complete sequence
          Length = 117693

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 501   aacatataactaaaatacttataa 524
             ||||||||||||||||| ||||||
Sbjct: 45368 aacatataactaaaataattataa 45345

to top

>ref|XM_520379.1| PREDICTED: Pan troglodytes LOC464874 (LOC464874), mRNA
          Length = 2279

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 404  cagctccaggttctcctccg 423
            ||||||||||||||||||||
Sbjct: 1349 cagctccaggttctcctccg 1330

to top

>gb|AC151571.1| Latimeria menadoensis clone VMRC4-140H19, complete sequence
          Length = 187392

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 596    tatgtaaaatgatattacct 615
              ||||||||||||||||||||
Sbjct: 103811 tatgtaaaatgatattacct 103792

to top

>gb|AC158556.9| Mus musculus chromosome 15, clone RP23-140F20, complete sequence
          Length = 203053

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 193   tcacatacgtacattatatacaca 216
             |||||||| |||||||||||||||
Sbjct: 79981 tcacatacatacattatatacaca 80004

to top

>gb|AC100208.16| Mus musculus chromosome 7, clone RP23-59J14, complete sequence
          Length = 280763

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 592  ttgctatgtaaaatgatatt 611
            ||||||||||||||||||||
Sbjct: 8112 ttgctatgtaaaatgatatt 8131

to top

>emb|Z78541.1|CEF19D8 Caenorhabditis elegans Cosmid F19D8, complete sequence
          Length = 29400

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 273  gatgagctaattaattgatgaagt 296
            ||||| ||||||||||||||||||
Sbjct: 1145 gatgatctaattaattgatgaagt 1168

to top

>gb|AC129300.3| Mus musculus BAC clone RP24-427A8 from chromosome 7, complete sequence
          Length = 155123

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 592   ttgctatgtaaaatgatatt 611
             ||||||||||||||||||||
Sbjct: 73774 ttgctatgtaaaatgatatt 73755

to top

>gb|AC116179.6| Mus musculus BAC clone RP23-272C6 from 10, complete sequence
          Length = 195123

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 540    tctcccagttggatgccaga 559
              ||||||||||||||||||||
Sbjct: 144831 tctcccagttggatgccaga 144812

to top

>gb|AC116033.3| Zea mays genomic clone ZM15C05 sequence, complete sequence
          Length = 99606

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 123   gcgaatggcacgaagcagtttgca 146
             ||||||||||||||||||| ||||
Sbjct: 78893 gcgaatggcacgaagcagtatgca 78870

to top

>gb|AC163268.4| Mus musculus chromosome 1, clone RP24-63C6, complete sequence
          Length = 224994

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 501   aacatataactaaaatacttataa 524
             ||||||||||||||||| ||||||
Sbjct: 70206 aacatataactaaaataattataa 70229

to top

>gb|BC064582.1| Homo sapiens KIAA1984, mRNA (cDNA clone IMAGE:5742861), complete cds
          Length = 1822

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 404  cagctccaggttctcctccg 423
            ||||||||||||||||||||
Sbjct: 1048 cagctccaggttctcctccg 1029

to top

>emb|AL355987.31| Human DNA sequence from clone RP11-216L13 on chromosome 9 Contains the
             3' end of the gene for a novel protein similar to mouse
             pancreatitis-induced protein 49  (PIP49), the 5' end of a
             novel gene (FLJ30346), five novel genes  (containing
             LOC158062, KIAA1984, FLJ35320, FLJ36901, FLJ30985,
             FLJ10101, FLJ37063 FLJ13045, FLJ40767), a nucleolin (NCL)
             pseudogene, the gene for a novel protein similar to mouse
             lipocalin 8 (EP17, Lcn5), a 13kD lysosomal H+ transporting
             ATPase V1 subunit G isoform 1 (ATP6V1G1) pseudogene, the
             gene for phosphohistidine phosphatase (PHP14), the gene
             for a novel protein similar to rat apical early endosomal
             glycoprotein (LOC252882), the EDF1 gene for endothelial
             differentiation-related factor 1 (MBF1, EDF-1), the 5' end
             of the TRAF2 gene for TNF receptor-associated factor 2
             (TRAP, TRAP3) and ten CpG islands, complete sequence
          Length = 182003

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 404   cagctccaggttctcctccg 423
             ||||||||||||||||||||
Sbjct: 84616 cagctccaggttctcctccg 84597

to top

>ref|XM_779451.1| PREDICTED: Strongylocentrotus purpuratus similar to potassium
            voltage-gated channel, subfamily H, member 8 (LOC579331),
            mRNA
          Length = 3177

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 341  gatcttctccgtgttggtgt 360
            ||||||||||||||||||||
Sbjct: 1326 gatcttctccgtgttggtgt 1307

to top

>emb|AL731600.3|OSJN00243 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0055C08,
              complete sequence
          Length = 145670

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 230    cgtgcgtgcatgcatgcata 249
              ||||||||||||||||||||
Sbjct: 142528 cgtgcgtgcatgcatgcata 142509

to top

>emb|AL606621.3|OSJN00054 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072K14,
             complete sequence
          Length = 139855

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 230   cgtgcgtgcatgcatgcata 249
             ||||||||||||||||||||
Sbjct: 11948 cgtgcgtgcatgcatgcata 11929

to top

>emb|AL731658.20| Mouse DNA sequence from clone RP23-329P17 on chromosome 11 Contains the
              Lif gene for leukemia inhibitory factor, two novel genes,
              the 3' end of a novel gene and a CpG island, complete
              sequence
          Length = 137519

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 73     cagaacacaggcacattatacact 96
              |||||||||| |||||||||||||
Sbjct: 130951 cagaacacagccacattatacact 130974

to top

>gb|AC023102.6| Homo sapiens chromosome 8, clone RP11-414L17, complete sequence
          Length = 175263

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 230    cgtgcgtgcatgcatgcata 249
              ||||||||||||||||||||
Sbjct: 164505 cgtgcgtgcatgcatgcata 164486

to top

>gb|AC114740.4| Homo sapiens BAC clone RP11-33G14 from 4, complete sequence
          Length = 33031

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 531  tgctcaatttctcccagttggatg 554
            |||||||||||||||| |||||||
Sbjct: 5884 tgctcaatttctcccatttggatg 5861

to top

>dbj|AK094220.1| Homo sapiens cDNA FLJ36901 fis, clone BRACE2002206
          Length = 2124

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 404 cagctccaggttctcctccg 423
           ||||||||||||||||||||
Sbjct: 483 cagctccaggttctcctccg 464

to top

>dbj|AK092639.1| Homo sapiens cDNA FLJ35320 fis, clone PROST2012007
          Length = 2323

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 404  cagctccaggttctcctccg 423
            ||||||||||||||||||||
Sbjct: 1320 cagctccaggttctcctccg 1301

to top

>dbj|AK090683.1| Homo sapiens cDNA FLJ33364 fis, clone BRACE2005448
          Length = 1555

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 404 cagctccaggttctcctccg 423
           ||||||||||||||||||||
Sbjct: 638 cagctccaggttctcctccg 619

to top

>gb|AC112173.3| Homo sapiens chromosome 5 clone CTD-2275D10, complete sequence
          Length = 125551

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 225   tcaatcgtgcgtgcatgcatgcat 248
             |||||| |||||||||||||||||
Sbjct: 19274 tcaatcctgcgtgcatgcatgcat 19251

to top

>ref|NM_001039374.3| Homo sapiens KIAA1984 (KIAA1984), mRNA
          Length = 1740

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 404  cagctccaggttctcctccg 423
            ||||||||||||||||||||
Sbjct: 1050 cagctccaggttctcctccg 1031

to top

>gb|AC113143.3| Homo sapiens chromosome 8, clone RP11-33I11, complete sequence
          Length = 157672

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 230   cgtgcgtgcatgcatgcata 249
             ||||||||||||||||||||
Sbjct: 10847 cgtgcgtgcatgcatgcata 10828

to top

>gb|AC093251.2| Homo sapiens chromosome 5 clone RP11-156N15, complete sequence
          Length = 62147

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 225  tcaatcgtgcgtgcatgcatgcat 248
            |||||| |||||||||||||||||
Sbjct: 3550 tcaatcctgcgtgcatgcatgcat 3573

to top

>dbj|AK154298.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
            full-length enriched library, clone:F630016D06
            product:unclassifiable, full insert sequence
          Length = 4040

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 229  tcgtgcgtgcatgcatgcat 248
            ||||||||||||||||||||
Sbjct: 2727 tcgtgcgtgcatgcatgcat 2708

to top

>dbj|AK079567.1| Mus musculus adult male hypothalamus cDNA, RIKEN full-length enriched
            library, clone:A230087I01 product:unclassifiable, full
            insert sequence
          Length = 2486

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 540  tctcccagttggatgccaga 559
            ||||||||||||||||||||
Sbjct: 1617 tctcccagttggatgccaga 1598

to top

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 230      cgtgcgtgcatgcatgcata 249
                ||||||||||||||||||||
Sbjct: 24130000 cgtgcgtgcatgcatgcata 24130019

to top

>gb|AC095043.3| Homo sapiens BAC clone RP11-124A7 from 4, complete sequence
          Length = 178037

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 536    aatttctcccagttggatgccaga 559
              |||||||||||||||| |||||||
Sbjct: 110304 aatttctcccagttgggtgccaga 110281

to top

>dbj|AB074447.1| Macaca fascicularis testis cDNA clone:QtsA-19877, similar to human
            KIAA1984 protein (KIAA1984), mRNA, NM_032874
          Length = 2296

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 404  cagctccaggttctcctccg 423
            ||||||||||||||||||||
Sbjct: 1040 cagctccaggttctcctccg 1021

to top

>dbj|AP004730.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0009J19
          Length = 156988

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 205    attatatacacatgtttgactcaa 228
              |||||||||||||||||| |||||
Sbjct: 123082 attatatacacatgtttgtctcaa 123105

to top

>dbj|AP004328.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OJ1616_B03
          Length = 96081

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 205   attatatacacatgtttgactcaa 228
             |||||||||||||||||| |||||
Sbjct: 27896 attatatacacatgtttgtctcaa 27919

to top

>emb|BX469898.9| Zebrafish DNA sequence from clone DKEY-180H12 in linkage group 18,
             complete sequence
          Length = 185729

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 229   tcgtgcgtgcatgcatgcat 248
             ||||||||||||||||||||
Sbjct: 56092 tcgtgcgtgcatgcatgcat 56073

to top

>emb|AL929533.12| Zebrafish DNA sequence from clone DKEY-18E17 in linkage group 5, complete
              sequence
          Length = 251370

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 560    ttagtggtgaaaattagtgg 579
              ||||||||||||||||||||
Sbjct: 108748 ttagtggtgaaaattagtgg 108767

to top

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 230      cgtgcgtgcatgcatgcata 249
                ||||||||||||||||||||
Sbjct: 24058206 cgtgcgtgcatgcatgcata 24058225

to top

>emb|AL772426.5|CNS08CA4 Oryza sativa chromosome 12, . BAC OJ1310_C03 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 132733

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 230   cgtgcgtgcatgcatgcata 249
             ||||||||||||||||||||
Sbjct: 14691 cgtgcgtgcatgcatgcata 14710

to top

>gb|AC140402.2| Mus musculus BAC clone RP24-90D2 from 10, complete sequence
          Length = 237935

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 540   tctcccagttggatgccaga 559
             ||||||||||||||||||||
Sbjct: 40541 tctcccagttggatgccaga 40522

to top

>emb|AL772358.6| Mouse DNA sequence from clone RP23-397K2 on chromosome 4, complete
             sequence
          Length = 173518

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 229   tcgtgcgtgcatgcatgcat 248
             ||||||||||||||||||||
Sbjct: 87658 tcgtgcgtgcatgcatgcat 87677

to top

>dbj|AB075864.1| Homo sapiens mRNA for KIAA1984 protein
          Length = 4207

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 404  cagctccaggttctcctccg 423
            ||||||||||||||||||||
Sbjct: 1163 cagctccaggttctcctccg 1144


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,819,479
Number of Sequences: 3902068
Number of extensions: 4819479
Number of successful extensions: 100962
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 100415
Number of HSP's gapped (non-prelim): 543
length of query: 620
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 597
effective length of database: 17,143,297,704
effective search space: 10234548729288
effective search space used: 10234548729288
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result