ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal14b08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_483192.1| Oryza sativa (japonica cultivar-group), mRNA 176 3e-41
2dbj|AK101328.1| Oryza sativa (japonica cultivar-group) cDNA clon... 176 3e-41
3gb|AY110296.1| Zea mays CL11152_1 mRNA sequence 145 1e-31
4dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 127 3e-26
5dbj|AP003892.3| Oryza sativa (japonica cultivar-group) genomic D... 127 3e-26
6gb|AC115634.2| Oryza sativa (japonica cultivar-group) chromosome... 103 4e-19
7dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 103 4e-19
8gb|DQ207724.1| Zea mays cultivar B73 IDP525 marker 42 1.2
9gb|AY312423.1| Otus elegans clone Oe050 microsatellite sequence 42 1.2
10gb|AC127228.3| Mus musculus BAC clone RP24-539P4 from chromosome... 40 4.8
11gb|AC119851.9| Mus musculus chromosome 7, clone RP23-106N20, com... 40 4.8
12emb|AL590809.5| Human DNA sequence from clone RP11-733H21 on chr... 40 4.8
13emb|AL160395.24| Human DNA sequence from clone RP11-474D23 on ch... 40 4.8
14gb|AF067624.1| Caenorhabditis elegans cosmid M01B12, complete se... 40 4.8
15gb|AC114796.3| Homo sapiens BAC clone RP11-700B17 from 4, comple... 40 4.8
16gb|AC159001.2| Mus musculus BAC clone RP24-221A23 from chromosom... 40 4.8
17gb|AC157575.1| Mus musculus BAC clone RP23-16D16 from 9, complet... 40 4.8
18gb|AC124587.5| Mus musculus BAC clone RP23-132G24 from 1, comple... 40 4.8
19gb|AC102776.10| Mus musculus chromosome 1, clone RP23-469D21, co... 40 4.8 
>ref|XM_483192.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2237

 Score =  176 bits (89), Expect = 3e-41
 Identities = 219/261 (83%), Gaps = 1/261 (0%)
 Strand = Plus / Minus

                                                                        
Query: 95   gccatggatacttcaggggaggacttcgcaagccacagcaacccaggnatcgttcctctt 154
            |||||||| |||||| | |||| ||| |||||||||||||| ||||| ||||||||| ||
Sbjct: 2013 gccatggaaacttcaagagaggcctttgcaagccacagcaagccagg-atcgttcctttt 1955

                                                                        
Query: 155  cagcaccaggtaggtctccgcacgcccaatctcatccgagacgacatcctcgcagaagcc 214
            ||  |||| ||| ||||| ||||| |||||||||||||||||||||||||| ||||| ||
Sbjct: 1954 caataccaagtaagtctctgcacgaccaatctcatccgagacgacatcctcacagaaacc 1895

                                                                        
Query: 215  aatcaactcgaggacctccatcgcagctttgtaattcaccacgctcctttggaaatgcgg 274
            |||||  || ||||||||||| ||||||||||| ||| |||| ||||||||||| || ||
Sbjct: 1894 aatcagttcaaggacctccattgcagctttgtagttcgccacactcctttggaactgtgg 1835

                                                                        
Query: 275  attggtcttgcgcaatcttctataacgaatgtcgttcgggttctctatcacattcttgat 334
            ||||| ||| |||| ||| || ||    || || |  |||| ||||||||||||||||||
Sbjct: 1834 attggacttacgcagtctcctgtacttgatatcatgtgggtgctctatcacattcttgat 1775

                                 
Query: 335  aattttgaagagtgtttgaag 355
             || || ||||||||||||||
Sbjct: 1774 gatcttaaagagtgtttgaag 1754
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>dbj|AK101328.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033034G12, full
            insert sequence
          Length = 2575

 Score =  176 bits (89), Expect = 3e-41
 Identities = 219/261 (83%), Gaps = 1/261 (0%)
 Strand = Plus / Minus

                                                                        
Query: 95   gccatggatacttcaggggaggacttcgcaagccacagcaacccaggnatcgttcctctt 154
            |||||||| |||||| | |||| ||| |||||||||||||| ||||| ||||||||| ||
Sbjct: 2350 gccatggaaacttcaagagaggcctttgcaagccacagcaagccagg-atcgttcctttt 2292

                                                                        
Query: 155  cagcaccaggtaggtctccgcacgcccaatctcatccgagacgacatcctcgcagaagcc 214
            ||  |||| ||| ||||| ||||| |||||||||||||||||||||||||| ||||| ||
Sbjct: 2291 caataccaagtaagtctctgcacgaccaatctcatccgagacgacatcctcacagaaacc 2232

                                                                        
Query: 215  aatcaactcgaggacctccatcgcagctttgtaattcaccacgctcctttggaaatgcgg 274
            |||||  || ||||||||||| ||||||||||| ||| |||| ||||||||||| || ||
Sbjct: 2231 aatcagttcaaggacctccattgcagctttgtagttcgccacactcctttggaactgtgg 2172

                                                                        
Query: 275  attggtcttgcgcaatcttctataacgaatgtcgttcgggttctctatcacattcttgat 334
            ||||| ||| |||| ||| || ||    || || |  |||| ||||||||||||||||||
Sbjct: 2171 attggacttacgcagtctcctgtacttgatatcatgtgggtgctctatcacattcttgat 2112

                                 
Query: 335  aattttgaagagtgtttgaag 355
             || || ||||||||||||||
Sbjct: 2111 gatcttaaagagtgtttgaag 2091
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>gb|AY110296.1| Zea mays CL11152_1 mRNA sequence
          Length = 1213

 Score =  145 bits (73), Expect = 1e-31
 Identities = 221/269 (82%), Gaps = 1/269 (0%)
 Strand = Plus / Minus

                                                                       
Query: 86  ttttatcaagccatggatacttcaggggaggacttcgcaagccacagcaacccaggnatc 145
           |||||||||||||  || || ||| |||| ||||| || ||||| ||||| ||||| |||
Sbjct: 903 ttttatcaagccagagagacctcaagggatgactttgccagccatagcaatccagg-atc 845

                                                                       
Query: 146 gttcctcttcagcaccaggtaggtctccgcacgcccaatctcatccgagacgacatcctc 205
            ||||| ||||  |||||||| ||||| |||||||||| |||||| ||||  ||||||||
Sbjct: 844 attccttttcaataccaggtaagtctcagcacgcccaacctcatctgagattacatcctc 785

                                                                       
Query: 206 gcagaagccaatcaactcgaggacctccatcgcagctttgtaattcaccacgctcctttg 265
            ||||| |||||||| || || |||||||| |||||||| || ||  | |||||||||||
Sbjct: 784 acagaaaccaatcaattcaagaacctccattgcagctttatagtttgctacgctcctttg 725

                                                                       
Query: 266 gaaatgcggattggtcttgcgcaatcttctataacgaatgtcgttcgggttctctatcac 325
           |||||| ||||||| ||| ||||||||  ||||   |||||| || || | |||||| ||
Sbjct: 724 gaaatgtggattggacttacgcaatctcttatacttaatgtcatttggatgctctataac 665

                                        
Query: 326 attcttgataattttgaagagtgtttgaa 354
           |||||||||||| || ||||| |||||||
Sbjct: 664 attcttgataatcttaaagagagtttgaa 636
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  127 bits (64), Expect = 3e-26
 Identities = 128/148 (86%), Gaps = 1/148 (0%)
 Strand = Plus / Minus

                                                                            
Query: 95       gccatggatacttcaggggaggacttcgcaagccacagcaacccaggnatcgttcctctt 154
                |||||||| |||||| | |||| ||| |||||||||||||| ||||| ||||||||| ||
Sbjct: 24723752 gccatggaaacttcaagagaggcctttgcaagccacagcaagccagg-atcgttcctttt 24723694

                                                                            
Query: 155      cagcaccaggtaggtctccgcacgcccaatctcatccgagacgacatcctcgcagaagcc 214
                ||  |||| ||| ||||| ||||| |||||||||||||||||||||||||| ||||| ||
Sbjct: 24723693 caataccaagtaagtctctgcacgaccaatctcatccgagacgacatcctcacagaaacc 24723634

                                            
Query: 215      aatcaactcgaggacctccatcgcagct 242
                |||||  || ||||||||||| ||||||
Sbjct: 24723633 aatcagttcaaggacctccattgcagct 24723606



 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                            
Query: 312      gggttctctatcacattcttgataattttgaagagtgtttgaag 355
                |||| |||||||||||||||||| || || ||||||||||||||
Sbjct: 24723344 gggtgctctatcacattcttgatgatcttaaagagtgtttgaag 24723301
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>dbj|AP003892.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1345_D02
          Length = 159613

 Score =  127 bits (64), Expect = 3e-26
 Identities = 128/148 (86%), Gaps = 1/148 (0%)
 Strand = Plus / Minus

                                                                         
Query: 95    gccatggatacttcaggggaggacttcgcaagccacagcaacccaggnatcgttcctctt 154
             |||||||| |||||| | |||| ||| |||||||||||||| ||||| ||||||||| ||
Sbjct: 24553 gccatggaaacttcaagagaggcctttgcaagccacagcaagccagg-atcgttcctttt 24495

                                                                         
Query: 155   cagcaccaggtaggtctccgcacgcccaatctcatccgagacgacatcctcgcagaagcc 214
             ||  |||| ||| ||||| ||||| |||||||||||||||||||||||||| ||||| ||
Sbjct: 24494 caataccaagtaagtctctgcacgaccaatctcatccgagacgacatcctcacagaaacc 24435

                                         
Query: 215   aatcaactcgaggacctccatcgcagct 242
             |||||  || ||||||||||| ||||||
Sbjct: 24434 aatcagttcaaggacctccattgcagct 24407



 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 40/44 (90%)
 Strand = Plus / Minus

                                                         
Query: 312   gggttctctatcacattcttgataattttgaagagtgtttgaag 355
             |||| |||||||||||||||||| || || ||||||||||||||
Sbjct: 24145 gggtgctctatcacattcttgatgatcttaaagagtgtttgaag 24102
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>gb|AC115634.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1653_D06,
             complete sequence
          Length = 71193

 Score =  103 bits (52), Expect = 4e-19
 Identities = 122/144 (84%), Gaps = 1/144 (0%)
 Strand = Plus / Minus

                                                                         
Query: 99    tggatacttcaggggaggacttcgcaagccacagcaacccaggnatcgttcctcttcagc 158
             |||| |||||| | |||||||| ||||||||| |||| | ||| ||||||||| ||||  
Sbjct: 27043 tggaaacttcaagagaggactttgcaagccacggcaagctagg-atcgttccttttcaat 26985

                                                                         
Query: 159   accaggtaggtctccgcacgcccaatctcatccgagacgacatcctcgcagaagccaatc 218
             |||| ||| ||||| ||||| ||||||||||||||||| |||||||| ||||| ||||||
Sbjct: 26984 accaagtaagtctctgcacgaccaatctcatccgagacaacatcctcacagaaaccaatc 26925

                                     
Query: 219   aactcgaggacctccatcgcagct 242
             || || |||| |||||| ||||||
Sbjct: 26924 aattcaaggaactccattgcagct 26901



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 39/44 (88%), Gaps = 1/44 (2%)
 Strand = Plus / Minus

                                                         
Query: 312   gggttctctatcacattcttgataat-tttgaagagtgtttgaa 354
             |||| |||||||||||||||||| || ||  |||||||||||||
Sbjct: 24688 gggtgctctatcacattcttgatgatcttaaaagagtgtttgaa 24645
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  103 bits (52), Expect = 4e-19
 Identities = 122/144 (84%), Gaps = 1/144 (0%)
 Strand = Plus / Minus

                                                                            
Query: 99       tggatacttcaggggaggacttcgcaagccacagcaacccaggnatcgttcctcttcagc 158
                |||| |||||| | |||||||| ||||||||| |||| | ||| ||||||||| ||||  
Sbjct: 10810111 tggaaacttcaagagaggactttgcaagccacggcaagctagg-atcgttccttttcaat 10810053

                                                                            
Query: 159      accaggtaggtctccgcacgcccaatctcatccgagacgacatcctcgcagaagccaatc 218
                |||| ||| ||||| ||||| ||||||||||||||||| |||||||| ||||| ||||||
Sbjct: 10810052 accaagtaagtctctgcacgaccaatctcatccgagacaacatcctcacagaaaccaatc 10809993

                                        
Query: 219      aactcgaggacctccatcgcagct 242
                || || |||| |||||| ||||||
Sbjct: 10809992 aattcaaggaactccattgcagct 10809969



 Score = 40.1 bits (20), Expect = 4.8
 Identities = 39/44 (88%), Gaps = 1/44 (2%)
 Strand = Plus / Minus

                                                            
Query: 312      gggttctctatcacattcttgataat-tttgaagagtgtttgaa 354
                |||| |||||||||||||||||| || ||  |||||||||||||
Sbjct: 10807756 gggtgctctatcacattcttgatgatcttaaaagagtgtttgaa 10807713
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>gb|DQ207724.1| Zea mays cultivar B73 IDP525 marker
          Length = 286

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 67/81 (82%), Gaps = 1/81 (1%)
 Strand = Plus / Plus

                                                                       
Query: 86  ttttatcaagccatggatacttcaggggaggacttcgcaagccacagcaacccaggnatc 145
           |||||||||||||  || || ||| |||||||||| || ||||| ||||| ||||| |||
Sbjct: 203 ttttatcaagccagagagacctcaagggaggactttgccagccatagcaatccagg-atc 261

                                
Query: 146 gttcctcttcagcaccaggta 166
            ||||| ||||  ||||||||
Sbjct: 262 attccttttcaataccaggta 282
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>gb|AY312423.1| Otus elegans clone Oe050 microsatellite sequence
          Length = 500

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 335 aattttgaagagtgtttgaag 355
           |||||||||||||||||||||
Sbjct: 162 aattttgaagagtgtttgaag 142
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>gb|AC127228.3| Mus musculus BAC clone RP24-539P4 from chromosome 7, complete sequence
          Length = 164223

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 328    tcttgataattttgaagagtgttt 351
              |||||| |||||||||||||||||
Sbjct: 105946 tcttgagaattttgaagagtgttt 105969
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>gb|AC119851.9| Mus musculus chromosome 7, clone RP23-106N20, complete sequence
          Length = 226307

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 328   tcttgataattttgaagagtgttt 351
             |||||| |||||||||||||||||
Sbjct: 23286 tcttgagaattttgaagagtgttt 23309
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>emb|AL590809.5| Human DNA sequence from clone RP11-733H21 on chromosome Xq23-24,
             complete sequence
          Length = 105329

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 146   gttcctcttcagcaccaggt 165
             ||||||||||||||||||||
Sbjct: 25779 gttcctcttcagcaccaggt 25760
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>emb|AL160395.24| Human DNA sequence from clone RP11-474D23 on chromosome 13q33.1-34
              Contains a the 3' end of a novel gene (MGC35169) and 2 CpG
              islands, complete sequence
          Length = 179959

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 327    ttcttgataattttgaagag 346
              ||||||||||||||||||||
Sbjct: 126184 ttcttgataattttgaagag 126203
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>gb|AF067624.1| Caenorhabditis elegans cosmid M01B12, complete sequence
          Length = 34907

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 336   attttgaagagtgtttgaag 355
             ||||||||||||||||||||
Sbjct: 30944 attttgaagagtgtttgaag 30963
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>gb|AC114796.3| Homo sapiens BAC clone RP11-700B17 from 4, complete sequence
          Length = 39786

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 328   tcttgataattttgaagagt 347
             ||||||||||||||||||||
Sbjct: 22531 tcttgataattttgaagagt 22550
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>gb|AC159001.2| Mus musculus BAC clone RP24-221A23 from chromosome 9, complete sequence
          Length = 161507

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 29    tgaaatgtcatgatatacag 48
             ||||||||||||||||||||
Sbjct: 24000 tgaaatgtcatgatatacag 23981
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>gb|AC157575.1| Mus musculus BAC clone RP23-16D16 from 9, complete sequence
          Length = 196682

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 29   tgaaatgtcatgatatacag 48
            ||||||||||||||||||||
Sbjct: 3700 tgaaatgtcatgatatacag 3719
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>gb|AC124587.5| Mus musculus BAC clone RP23-132G24 from 1, complete sequence
          Length = 220046

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 2      ctaaaccattttcgcagcacaaggggat 29
              ||||||||||| || |||||||||||||
Sbjct: 170308 ctaaaccatttccgtagcacaaggggat 170281
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>gb|AC102776.10| Mus musculus chromosome 1, clone RP23-469D21, complete sequence
          Length = 190746

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 2      ctaaaccattttcgcagcacaaggggat 29
              ||||||||||| || |||||||||||||
Sbjct: 134631 ctaaaccatttccgtagcacaaggggat 134658


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,436,737
Number of Sequences: 3902068
Number of extensions: 2436737
Number of successful extensions: 40923
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40860
Number of HSP's gapped (non-prelim): 57
length of query: 358
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 336
effective length of database: 17,147,199,772
effective search space: 5761459123392
effective search space used: 5761459123392
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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