| Clone Name | rbaal13m07 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_480189.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2178 Score = 307 bits (155), Expect = 3e-80 Identities = 378/453 (83%) Strand = Plus / Minus Query: 213 ttcgctgtcaaggcgaatccttttggtaccaacctcgtcagcagccggcaccctattctc 272 |||||| ||||| |||||||| |||||||||||||| || |||||| ||||| ||||| Sbjct: 2166 ttcgctctcaagacgaatcctcttggtaccaacctcatcgctagccggtaccctgttctc 2107 Query: 273 ctttgcttccaccgagcacctcttgtaaggtttgaagcctgtccggcgggatttcatatt 332 ||| |||||||| |||||||||||||| |||||||| || |||| ||| ||||||| || Sbjct: 2106 cttcgcttccactgagcacctcttgtatggtttgaaaccggtcctgcgagatttcagctt 2047 Query: 333 caggtgtgacaattcaatgggaaaggaagctcttggcccaaccaatgtgtcaagttcatg 392 ||||| |||||||||| | |||||||||||||||||| || || |||||| ||||| || Sbjct: 2046 caggtttgacaattcattaggaaaggaagctcttggctcatccgctgtgtcgagttcttg 1987 Query: 393 gtccataactgcagcactcttgttgaggtcgaccgtcaccgtagtagcttcatcttgctc 452 || |||| || ||| ||||||||||||| ||||||||||| || ||||||||| || Sbjct: 1986 atcaataatagcggcattcttgttgaggtcaaccgtcaccgtggttacttcatcttcttc 1927 Query: 453 ccctctgggaaccaccttcaatccttctgcttgtggaggagaaaagctntggggaagctt 512 | | || || | |||| |||||||| |||| |||||||||||||| ||||||||| | Sbjct: 1926 ctccttgctaatctcctttgatccttctacttgcggaggagaaaagctttggggaagcct 1867 Query: 513 tcctctactgaacagtttatcgaaagccatacgaccctcctcggaaacttccttccatga 572 | |||||||||||||| ||| ||||||| ||||||||| || ||||||||||||||||| Sbjct: 1866 ttctctactgaacagtgcatcaaaagccagacgaccctcttcagaaacttccttccatga 1807 Query: 573 atcattcgtgcttgaaatgttcctaaacctgcgatggntcatgtcaccagctgaagaatt 632 |||| | ||||||| | || ||||||| || || ||| | ||||||| |||||||| || Sbjct: 1806 atcacttgtgcttgcactgctcctaaatctacggtggttattgtcaccggctgaagagtt 1747 Query: 633 actgcaacatgcttgctgtgtcttgtcgttagc 665 ||||||| ||||||||| || |||||||||||| Sbjct: 1746 actgcaagatgcttgctttgccttgtcgttagc 1714
>dbj|AK104073.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-C12, full insert sequence Length = 1275 Score = 307 bits (155), Expect = 3e-80 Identities = 378/453 (83%) Strand = Plus / Minus Query: 213 ttcgctgtcaaggcgaatccttttggtaccaacctcgtcagcagccggcaccctattctc 272 |||||| ||||| |||||||| |||||||||||||| || |||||| ||||| ||||| Sbjct: 995 ttcgctctcaagacgaatcctcttggtaccaacctcatcgctagccggtaccctgttctc 936 Query: 273 ctttgcttccaccgagcacctcttgtaaggtttgaagcctgtccggcgggatttcatatt 332 ||| |||||||| |||||||||||||| |||||||| || |||| ||| ||||||| || Sbjct: 935 cttcgcttccactgagcacctcttgtatggtttgaaaccggtcctgcgagatttcagctt 876 Query: 333 caggtgtgacaattcaatgggaaaggaagctcttggcccaaccaatgtgtcaagttcatg 392 ||||| |||||||||| | |||||||||||||||||| || || |||||| ||||| || Sbjct: 875 caggtttgacaattcattaggaaaggaagctcttggctcatccgctgtgtcgagttcttg 816 Query: 393 gtccataactgcagcactcttgttgaggtcgaccgtcaccgtagtagcttcatcttgctc 452 || |||| || ||| ||||||||||||| ||||||||||| || ||||||||| || Sbjct: 815 atcaataatagcggcattcttgttgaggtcaaccgtcaccgtggttacttcatcttcttc 756 Query: 453 ccctctgggaaccaccttcaatccttctgcttgtggaggagaaaagctntggggaagctt 512 | | || || | |||| |||||||| |||| |||||||||||||| ||||||||| | Sbjct: 755 ctccttgctaatctcctttgatccttctacttgcggaggagaaaagctttggggaagcct 696 Query: 513 tcctctactgaacagtttatcgaaagccatacgaccctcctcggaaacttccttccatga 572 | |||||||||||||| ||| ||||||| ||||||||| || ||||||||||||||||| Sbjct: 695 ttctctactgaacagtgcatcaaaagccagacgaccctcttcagaaacttccttccatga 636 Query: 573 atcattcgtgcttgaaatgttcctaaacctgcgatggntcatgtcaccagctgaagaatt 632 |||| | ||||||| | || ||||||| || || ||| | ||||||| |||||||| || Sbjct: 635 atcacttgtgcttgcactgctcctaaatctacggtggttattgtcaccggctgaagagtt 576 Query: 633 actgcaacatgcttgctgtgtcttgtcgttagc 665 ||||||| ||||||||| || |||||||||||| Sbjct: 575 actgcaagatgcttgctttgccttgtcgttagc 543 Score = 58.0 bits (29), Expect = 4e-05 Identities = 84/100 (84%), Gaps = 3/100 (3%) Strand = Plus / Minus Query: 40 gctgctcggcaagcattaacatacaacacataacaaattgagttctgtgaaacactgcat 99 |||||| |||||||||||| |||||||||| || |||||||||| ||||| | ||||| Sbjct: 1149 gctgcttggcaagcattaagatacaacacacaataaattgagtt-tgtgaggtaatgcat 1091 Query: 100 tgcaaggactggcaagtcctatagtagcttagatgtaaat 139 || |||| ||| ||||||||| |||||| ||||||||| Sbjct: 1090 tggaaggtctg--aagtcctatggtagctcggatgtaaat 1053
>gb|AY452478.1| Oryza sativa (japonica cultivar-group) circadian oscillator component (COC1) mRNA, complete cds Length = 2608 Score = 299 bits (151), Expect = 6e-78 Identities = 377/453 (83%) Strand = Plus / Minus Query: 213 ttcgctgtcaaggcgaatccttttggtaccaacctcgtcagcagccggcaccctattctc 272 |||||| ||||| |||||||| |||||||||||||| || |||||| ||||| ||||| Sbjct: 2412 ttcgctctcaagacgaatcctcttggtaccaacctcatcgctagccggtaccctgttctc 2353 Query: 273 ctttgcttccaccgagcacctcttgtaaggtttgaagcctgtccggcgggatttcatatt 332 ||| |||||||| |||||||||||||| |||||||| || |||| ||| ||||||| || Sbjct: 2352 cttcgcttccactgagcacctcttgtatggtttgaaaccggtcctgcgagatttcagctt 2293 Query: 333 caggtgtgacaattcaatgggaaaggaagctcttggcccaaccaatgtgtcaagttcatg 392 ||||| |||||||||| | |||||||||||||||||| || || |||||| ||||| || Sbjct: 2292 caggtttgacaattcattaggaaaggaagctcttggctcatccgctgtgtcgagttcttg 2233 Query: 393 gtccataactgcagcactcttgttgaggtcgaccgtcaccgtagtagcttcatcttgctc 452 || |||| || ||| ||||||||||||| ||||||||||| || ||||||||| || Sbjct: 2232 atcaataatagcggcattcttgttgaggtcaaccgtcaccgtggttacttcatcttcttc 2173 Query: 453 ccctctgggaaccaccttcaatccttctgcttgtggaggagaaaagctntggggaagctt 512 | | || || | |||| |||||||| |||| |||||||||||||| ||||||||| | Sbjct: 2172 ctccttgctaatctcctttgatccttctacttgcggaggagaaaagctttggggaagcct 2113 Query: 513 tcctctactgaacagtttatcgaaagccatacgaccctcctcggaaacttccttccatga 572 | |||||||||||||| ||| ||||||| |||||||| || ||||||||||||||||| Sbjct: 2112 ttctctactgaacagtgcatcaaaagccagacgaccctattcagaaacttccttccatga 2053 Query: 573 atcattcgtgcttgaaatgttcctaaacctgcgatggntcatgtcaccagctgaagaatt 632 |||| | ||||||| | || ||||||| || || ||| | ||||||| |||||||| || Sbjct: 2052 atcacttgtgcttgcactgctcctaaatctacggtggttattgtcaccggctgaagagtt 1993 Query: 633 actgcaacatgcttgctgtgtcttgtcgttagc 665 ||||||| ||||||||| || |||||||||||| Sbjct: 1992 actgcaagatgcttgctttgccttgtcgttagc 1960 Score = 65.9 bits (33), Expect = 2e-07 Identities = 85/100 (85%), Gaps = 3/100 (3%) Strand = Plus / Minus Query: 40 gctgctcggcaagcattaacatacaacacataacaaattgagttctgtgaaacactgcat 99 |||||| |||||||||||| |||||||||| || |||||||||| ||||| | ||||| Sbjct: 2566 gctgcttggcaagcattaagatacaacacacaataaattgagtt-tgtgaggtaatgcat 2508 Query: 100 tgcaaggactggcaagtcctatagtagcttagatgtaaat 139 || |||| ||| ||||||||| |||||| |||||||||| Sbjct: 2507 tggaaggtctg--aagtcctatggtagctcagatgtaaat 2470
>dbj|AK111893.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033071N16, full insert sequence Length = 3237 Score = 291 bits (147), Expect = 2e-75 Identities = 376/453 (83%) Strand = Plus / Minus Query: 213 ttcgctgtcaaggcgaatccttttggtaccaacctcgtcagcagccggcaccctattctc 272 |||||| ||||| |||||||| |||||||||||||| || |||||| ||||| ||||| Sbjct: 2957 ttcgctctcaagacgaatcctcttggtaccaacctcatcgctagccggtaccctgttctc 2898 Query: 273 ctttgcttccaccgagcacctcttgtaaggtttgaagcctgtccggcgggatttcatatt 332 ||| |||||||| |||||||||||||| |||||||| || |||| ||| ||||||| || Sbjct: 2897 cttcgcttccactgagcacctcttgtatggtttgaaaccggtcctgcgagatttcagctt 2838 Query: 333 caggtgtgacaattcaatgggaaaggaagctcttggcccaaccaatgtgtcaagttcatg 392 ||||| |||||||||| | |||||||||||||||||| || || |||||| ||||| || Sbjct: 2837 caggtttgacaattcattaggaaaggaagctcttggctcatccgctgtgtcgagttcttg 2778 Query: 393 gtccataactgcagcactcttgttgaggtcgaccgtcaccgtagtagcttcatcttgctc 452 || |||| || ||| ||||||||||||| ||||||||||| || ||||||||| || Sbjct: 2777 atcaataatagcggcattcttgttgaggtcaaccgtcaccgtggttacttcatcttcttc 2718 Query: 453 ccctctgggaaccaccttcaatccttctgcttgtggaggagaaaagctntggggaagctt 512 | | || | | |||| |||||||| |||| |||||||||||||| ||||||||| | Sbjct: 2717 ctccttgctgatctcctttgatccttctacttgcggaggagaaaagctttggggaagcct 2658 Query: 513 tcctctactgaacagtttatcgaaagccatacgaccctcctcggaaacttccttccatga 572 | |||||||||||||| ||| ||||||| ||||||| | || ||||||||||||||||| Sbjct: 2657 ttctctactgaacagtgcatcaaaagccagacgacccccttcagaaacttccttccatga 2598 Query: 573 atcattcgtgcttgaaatgttcctaaacctgcgatggntcatgtcaccagctgaagaatt 632 |||| | ||||||| | || ||||||| || || ||| | ||||||| |||||||| || Sbjct: 2597 atcacttgtgcttgcactgctcctaaatctacggtggttattgtcaccggctgaagagtt 2538 Query: 633 actgcaacatgcttgctgtgtcttgtcgttagc 665 ||||||| ||||||||| || |||||||||||| Sbjct: 2537 actgcaagatgcttgctttgccttgtcgttagc 2505 Score = 58.0 bits (29), Expect = 4e-05 Identities = 84/100 (84%), Gaps = 3/100 (3%) Strand = Plus / Minus Query: 40 gctgctcggcaagcattaacatacaacacataacaaattgagttctgtgaaacactgcat 99 |||||| |||||||||||| |||||||||| || |||||||||| ||||| | ||||| Sbjct: 3111 gctgcttggcaagcattaagatacaacacacaataaattgagtt-tgtgaggtaatgcat 3053 Query: 100 tgcaaggactggcaagtcctatagtagcttagatgtaaat 139 || |||| ||| ||||||||| |||||| ||||||||| Sbjct: 3052 tggaaggtctg--aagtcctatggtagctcggatgtaaat 3015
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 220 bits (111), Expect = 5e-54 Identities = 281/338 (83%) Strand = Plus / Minus Query: 213 ttcgctgtcaaggcgaatccttttggtaccaacctcgtcagcagccggcaccctattctc 272 |||||| ||||| |||||||| |||||||||||||| || |||||| ||||| ||||| Sbjct: 3366760 ttcgctctcaagacgaatcctcttggtaccaacctcatcgctagccggtaccctgttctc 3366701 Query: 273 ctttgcttccaccgagcacctcttgtaaggtttgaagcctgtccggcgggatttcatatt 332 ||| |||||||| |||||||||||||| |||||||| || |||| ||| ||||||| || Sbjct: 3366700 cttcgcttccactgagcacctcttgtatggtttgaaaccggtcctgcgagatttcagctt 3366641 Query: 333 caggtgtgacaattcaatgggaaaggaagctcttggcccaaccaatgtgtcaagttcatg 392 ||||| |||||||||| | |||||||||||||||||| || || |||||| ||||| || Sbjct: 3366640 caggtttgacaattcattaggaaaggaagctcttggctcatccgctgtgtcgagttcttg 3366581 Query: 393 gtccataactgcagcactcttgttgaggtcgaccgtcaccgtagtagcttcatcttgctc 452 || |||| || ||| ||||||||||||| ||||||||||| || ||||||||| || Sbjct: 3366580 atcaataatagcggcattcttgttgaggtcaaccgtcaccgtggttacttcatcttcttc 3366521 Query: 453 ccctctgggaaccaccttcaatccttctgcttgtggaggagaaaagctntggggaagctt 512 | | || || | |||| |||||||| |||| |||||||||||||| ||||||||| | Sbjct: 3366520 ctccttgctaatctcctttgatccttctacttgcggaggagaaaagctttggggaagcct 3366461 Query: 513 tcctctactgaacagtttatcgaaagccatacgaccct 550 | |||||||||||||| ||| ||||||| |||||||| Sbjct: 3366460 ttctctactgaacagtgcatcaaaagccagacgaccct 3366423 Score = 93.7 bits (47), Expect = 7e-16 Identities = 94/110 (85%) Strand = Plus / Minus Query: 556 gaaacttccttccatgaatcattcgtgcttgaaatgttcctaaacctgcgatggntcatg 615 ||||||||||||||||||||| | ||||||| | || ||||||| || || ||| | || Sbjct: 3366327 gaaacttccttccatgaatcacttgtgcttgcactgctcctaaatctacggtggttattg 3366268 Query: 616 tcaccagctgaagaattactgcaacatgcttgctgtgtcttgtcgttagc 665 ||||| |||||||| ||||||||| ||||||||| || |||||||||||| Sbjct: 3366267 tcaccggctgaagagttactgcaagatgcttgctttgccttgtcgttagc 3366218 Score = 58.0 bits (29), Expect = 4e-05 Identities = 84/100 (84%), Gaps = 3/100 (3%) Strand = Plus / Minus Query: 40 gctgctcggcaagcattaacatacaacacataacaaattgagttctgtgaaacactgcat 99 |||||| |||||||||||| |||||||||| || |||||||||| ||||| | ||||| Sbjct: 3366914 gctgcttggcaagcattaagatacaacacacaataaattgagtt-tgtgaggtaatgcat 3366856 Query: 100 tgcaaggactggcaagtcctatagtagcttagatgtaaat 139 || |||| ||| ||||||||| |||||| ||||||||| Sbjct: 3366855 tggaaggtctg--aagtcctatggtagctcggatgtaaat 3366818
>dbj|AK121547.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033032F11, full insert sequence Length = 650 Score = 220 bits (111), Expect = 5e-54 Identities = 281/338 (83%) Strand = Plus / Minus Query: 213 ttcgctgtcaaggcgaatccttttggtaccaacctcgtcagcagccggcaccctattctc 272 |||||| ||||| |||||||| |||||||||||||| || |||||| ||||| ||||| Sbjct: 359 ttcgctctcaagacgaatcctcttggtaccaacctcatcgctagccggtaccctgttctc 300 Query: 273 ctttgcttccaccgagcacctcttgtaaggtttgaagcctgtccggcgggatttcatatt 332 ||| |||||||| |||||||||||||| |||||||| || |||| ||| ||||||| || Sbjct: 299 cttcgcttccactgagcacctcttgtatggtttgaaaccggtcctgcgagatttcagctt 240 Query: 333 caggtgtgacaattcaatgggaaaggaagctcttggcccaaccaatgtgtcaagttcatg 392 ||||| |||||||||| | |||||||||||||||||| || || |||||| ||||| || Sbjct: 239 caggtttgacaattcattaggaaaggaagctcttggctcatccgctgtgtcgagttcttg 180 Query: 393 gtccataactgcagcactcttgttgaggtcgaccgtcaccgtagtagcttcatcttgctc 452 || |||| || ||| ||||||||||||| ||||||||||| || ||||||||| || Sbjct: 179 atcaataatagcggcattcttgttgaggtcaaccgtcaccgtggttacttcatcttcttc 120 Query: 453 ccctctgggaaccaccttcaatccttctgcttgtggaggagaaaagctntggggaagctt 512 | | || || | |||| |||||||| |||| |||||||||||||| ||||||||| | Sbjct: 119 ctccttgctaatctcctttgatccttctacttgcggaggagaaaagctttggggaagcct 60 Query: 513 tcctctactgaacagtttatcgaaagccatacgaccct 550 | |||||||||||||| ||| ||||||| |||||||| Sbjct: 59 ttctctactgaacagtgcatcaaaagccagacgaccct 22 Score = 58.0 bits (29), Expect = 4e-05 Identities = 84/100 (84%), Gaps = 3/100 (3%) Strand = Plus / Minus Query: 40 gctgctcggcaagcattaacatacaacacataacaaattgagttctgtgaaacactgcat 99 |||||| |||||||||||| |||||||||| || |||||||||| ||||| | ||||| Sbjct: 513 gctgcttggcaagcattaagatacaacacacaataaattgagtt-tgtgaggtaatgcat 455 Query: 100 tgcaaggactggcaagtcctatagtagcttagatgtaaat 139 || |||| ||| ||||||||| |||||| ||||||||| Sbjct: 454 tggaaggtctg--aagtcctatggtagctcggatgtaaat 417
>dbj|AP004460.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0438H08 Length = 148626 Score = 220 bits (111), Expect = 5e-54 Identities = 281/338 (83%) Strand = Plus / Minus Query: 213 ttcgctgtcaaggcgaatccttttggtaccaacctcgtcagcagccggcaccctattctc 272 |||||| ||||| |||||||| |||||||||||||| || |||||| ||||| ||||| Sbjct: 144327 ttcgctctcaagacgaatcctcttggtaccaacctcatcgctagccggtaccctgttctc 144268 Query: 273 ctttgcttccaccgagcacctcttgtaaggtttgaagcctgtccggcgggatttcatatt 332 ||| |||||||| |||||||||||||| |||||||| || |||| ||| ||||||| || Sbjct: 144267 cttcgcttccactgagcacctcttgtatggtttgaaaccggtcctgcgagatttcagctt 144208 Query: 333 caggtgtgacaattcaatgggaaaggaagctcttggcccaaccaatgtgtcaagttcatg 392 ||||| |||||||||| | |||||||||||||||||| || || |||||| ||||| || Sbjct: 144207 caggtttgacaattcattaggaaaggaagctcttggctcatccgctgtgtcgagttcttg 144148 Query: 393 gtccataactgcagcactcttgttgaggtcgaccgtcaccgtagtagcttcatcttgctc 452 || |||| || ||| ||||||||||||| ||||||||||| || ||||||||| || Sbjct: 144147 atcaataatagcggcattcttgttgaggtcaaccgtcaccgtggttacttcatcttcttc 144088 Query: 453 ccctctgggaaccaccttcaatccttctgcttgtggaggagaaaagctntggggaagctt 512 | | || || | |||| |||||||| |||| |||||||||||||| ||||||||| | Sbjct: 144087 ctccttgctaatctcctttgatccttctacttgcggaggagaaaagctttggggaagcct 144028 Query: 513 tcctctactgaacagtttatcgaaagccatacgaccct 550 | |||||||||||||| ||| ||||||| |||||||| Sbjct: 144027 ttctctactgaacagtgcatcaaaagccagacgaccct 143990 Score = 93.7 bits (47), Expect = 7e-16 Identities = 94/110 (85%) Strand = Plus / Minus Query: 556 gaaacttccttccatgaatcattcgtgcttgaaatgttcctaaacctgcgatggntcatg 615 ||||||||||||||||||||| | ||||||| | || ||||||| || || ||| | || Sbjct: 143894 gaaacttccttccatgaatcacttgtgcttgcactgctcctaaatctacggtggttattg 143835 Query: 616 tcaccagctgaagaattactgcaacatgcttgctgtgtcttgtcgttagc 665 ||||| |||||||| ||||||||| ||||||||| || |||||||||||| Sbjct: 143834 tcaccggctgaagagttactgcaagatgcttgctttgccttgtcgttagc 143785 Score = 58.0 bits (29), Expect = 4e-05 Identities = 84/100 (84%), Gaps = 3/100 (3%) Strand = Plus / Minus Query: 40 gctgctcggcaagcattaacatacaacacataacaaattgagttctgtgaaacactgcat 99 |||||| |||||||||||| |||||||||| || |||||||||| ||||| | ||||| Sbjct: 144481 gctgcttggcaagcattaagatacaacacacaataaattgagtt-tgtgaggtaatgcat 144423 Query: 100 tgcaaggactggcaagtcctatagtagcttagatgtaaat 139 || |||| ||| ||||||||| |||||| ||||||||| Sbjct: 144422 tggaaggtctg--aagtcctatggtagctcggatgtaaat 144385
>dbj|AP004698.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0498E12 Length = 153523 Score = 145 bits (73), Expect = 2e-31 Identities = 136/157 (86%) Strand = Plus / Minus Query: 213 ttcgctgtcaaggcgaatccttttggtaccaacctcgtcagcagccggcaccctattctc 272 |||||| ||||| |||||||| |||||||||||||| || |||||| ||||| ||||| Sbjct: 179 ttcgctctcaagacgaatcctcttggtaccaacctcatcgctagccggtaccctgttctc 120 Query: 273 ctttgcttccaccgagcacctcttgtaaggtttgaagcctgtccggcgggatttcatatt 332 ||| |||||||| |||||||||||||| |||||||| || |||| ||| ||||||| || Sbjct: 119 cttcgcttccactgagcacctcttgtatggtttgaaaccggtcctgcgagatttcagctt 60 Query: 333 caggtgtgacaattcaatgggaaaggaagctcttggc 369 ||||| |||||||||| | |||||||||||||||||| Sbjct: 59 caggtttgacaattcattaggaaaggaagctcttggc 23 Score = 58.0 bits (29), Expect = 4e-05 Identities = 84/100 (84%), Gaps = 3/100 (3%) Strand = Plus / Minus Query: 40 gctgctcggcaagcattaacatacaacacataacaaattgagttctgtgaaacactgcat 99 |||||| |||||||||||| |||||||||| || |||||||||| ||||| | ||||| Sbjct: 333 gctgcttggcaagcattaagatacaacacacaataaattgagtt-tgtgaggtaatgcat 275 Query: 100 tgcaaggactggcaagtcctatagtagcttagatgtaaat 139 || |||| ||| ||||||||| |||||| ||||||||| Sbjct: 274 tggaaggtctg--aagtcctatggtagctcggatgtaaat 237
>dbj|AB210845.1| Lemna paucicostata LpLHY H1 mRNA for LHY homologue1, complete cds Length = 2338 Score = 54.0 bits (27), Expect = 6e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 280 tccaccgagcacctcttgtaaggtttgaagcctgt 314 ||||||||||||||||||||||| ||||| ||||| Sbjct: 2116 tccaccgagcacctcttgtaaggcttgaatcctgt 2082
>ref|NM_179237.1| Arabidopsis thaliana LHY (LATE ELONGATED HYPOCOTYL); DNA binding / transcription factor AT1G01060 (LHY) transcript variant AT1G01060.2 mRNA, complete cds Length = 2814 Score = 48.1 bits (24), Expect = 0.038 Identities = 33/36 (91%) Strand = Plus / Minus Query: 541 atacgaccctcctcggaaacttccttccatgaatca 576 ||||||||||| ||||| ||||||||||| |||||| Sbjct: 2160 atacgaccctcttcggagacttccttccacgaatca 2125
>ref|NM_099988.3| Arabidopsis thaliana LHY (LATE ELONGATED HYPOCOTYL); DNA binding / transcription factor AT1G01060 (LHY) transcript variant AT1G01060.1 mRNA, complete cds Length = 2704 Score = 48.1 bits (24), Expect = 0.038 Identities = 33/36 (91%) Strand = Plus / Minus Query: 541 atacgaccctcctcggaaacttccttccatgaatca 576 ||||||||||| ||||| ||||||||||| |||||| Sbjct: 2050 atacgaccctcttcggagacttccttccacgaatca 2015
>ref|NM_001035847.1| Arabidopsis thaliana LHY (LATE ELONGATED HYPOCOTYL); DNA binding AT1G01060 (LHY) transcript variant AT1G01060.3 mRNA, complete cds Length = 2517 Score = 48.1 bits (24), Expect = 0.038 Identities = 33/36 (91%) Strand = Plus / Minus Query: 541 atacgaccctcctcggaaacttccttccatgaatca 576 ||||||||||| ||||| ||||||||||| |||||| Sbjct: 1967 atacgaccctcttcggagacttccttccacgaatca 1932
>gb|AY519507.1| Arabidopsis thaliana MYB transcription factor (At1g01060) mRNA, complete cds Length = 1938 Score = 48.1 bits (24), Expect = 0.038 Identities = 33/36 (91%) Strand = Plus / Minus Query: 541 atacgaccctcctcggaaacttccttccatgaatca 576 ||||||||||| ||||| ||||||||||| |||||| Sbjct: 1610 atacgaccctcttcggagacttccttccacgaatca 1575
>emb|BX817115.1|CNS0AELF Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH86ZB04 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2427 Score = 48.1 bits (24), Expect = 0.038 Identities = 33/36 (91%) Strand = Plus / Minus Query: 541 atacgaccctcctcggaaacttccttccatgaatca 576 ||||||||||| ||||| ||||||||||| |||||| Sbjct: 2037 atacgaccctcttcggagacttccttccacgaatca 2002
>emb|AJ006404.1|ATAJ6404 Arabidopsis thaliana mRNA for LATE ELONGATED HYPOCOTYL MYB transcription factor Length = 2526 Score = 48.1 bits (24), Expect = 0.038 Identities = 33/36 (91%) Strand = Plus / Minus Query: 541 atacgaccctcctcggaaacttccttccatgaatca 576 ||||||||||| ||||| ||||||||||| |||||| Sbjct: 1947 atacgaccctcttcggagacttccttccacgaatca 1912
>gb|BC108602.1| Xenopus laevis cDNA clone MGC:131139 IMAGE:7206683, complete cds Length = 2690 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 474 tccttctgcttgtggaggaga 494 ||||||||||||||||||||| Sbjct: 1937 tccttctgcttgtggaggaga 1957
>gb|BC032563.1| Homo sapiens cytoplasmic linker associated protein 1, mRNA (cDNA clone IMAGE:5579440), complete cds Length = 3746 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 434 tagtagcttcatcttgctccc 454 ||||||||||||||||||||| Sbjct: 561 tagtagcttcatcttgctccc 541
>gb|BC112940.1| Homo sapiens cytoplasmic linker associated protein 1, mRNA (cDNA clone MGC:131895 IMAGE:5501463), complete cds Length = 4974 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 434 tagtagcttcatcttgctccc 454 ||||||||||||||||||||| Sbjct: 4675 tagtagcttcatcttgctccc 4655
>emb|AL451065.13| Human DNA sequence from clone RP11-274J16 on chromosome 9 Contains the 3' end of the FGD3 gene for FGD1 family, member 3 (FLJ00004), a novel gene, a novel gene (MGC26847), a novel gene (MGC11115), the NINJ1 gene for ninjurin 1 and three CpG islands, complete sequence Length = 163689 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 340 gacaattcaatgggaaaggaa 360 ||||||||||||||||||||| Sbjct: 87403 gacaattcaatgggaaaggaa 87383
>gb|AF347693.1| Homo sapiens multiple asters 1 (MAST1) mRNA, complete cds Length = 7888 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 434 tagtagcttcatcttgctccc 454 ||||||||||||||||||||| Sbjct: 4707 tagtagcttcatcttgctccc 4687
>emb|CR933722.1| Homo sapiens mRNA; cDNA DKFZp686H2039 (from clone DKFZp686H2039) Length = 4021 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 434 tagtagcttcatcttgctccc 454 ||||||||||||||||||||| Sbjct: 3752 tagtagcttcatcttgctccc 3732
>emb|CR749627.1| Homo sapiens mRNA; cDNA DKFZp686D1968 (from clone DKFZp686D1968) Length = 4787 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 434 tagtagcttcatcttgctccc 454 ||||||||||||||||||||| Sbjct: 1612 tagtagcttcatcttgctccc 1592
>emb|AJ459419.1|TRU459419 Takifugu rubripes cacng5 gene, prkca gene and putative LINE-like retrotransposon, cosmids C012B17 and C123B01 Length = 64219 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 112 caagtcctatagtagcttagatgta 136 ||||||||| ||||||||||||||| Sbjct: 15454 caagtcctacagtagcttagatgta 15478
>emb|BX901901.6| Zebrafish DNA sequence from clone CH211-223B8 in linkage group 1, complete sequence Length = 172983 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 54 attaacatacaacacataacaaatt 78 ||||||||| ||||||||||||||| Sbjct: 162761 attaacatataacacataacaaatt 162785
>ref|NM_015282.1| Homo sapiens cytoplasmic linker associated protein 1 (CLASP1), mRNA Length = 8089 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 434 tagtagcttcatcttgctccc 454 ||||||||||||||||||||| Sbjct: 4932 tagtagcttcatcttgctccc 4912
>dbj|AK123216.1| Homo sapiens cDNA FLJ41222 fis, clone BRAMY2029204 Length = 2326 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 434 tagtagcttcatcttgctccc 454 ||||||||||||||||||||| Sbjct: 2042 tagtagcttcatcttgctccc 2022
>emb|BX648933.1|HSM809084 Homo sapiens mRNA; cDNA DKFZp686A1844 (from clone DKFZp686A1844) Length = 5770 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 434 tagtagcttcatcttgctccc 454 ||||||||||||||||||||| Sbjct: 2581 tagtagcttcatcttgctccc 2561
>dbj|AK074338.1| Homo sapiens cDNA FLJ23758 fis, clone HEP18066 Length = 5906 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 434 tagtagcttcatcttgctccc 454 ||||||||||||||||||||| Sbjct: 2990 tagtagcttcatcttgctccc 2970
>gb|AC140940.1| Gallus gallus BAC clone TAM32-30H10 from chromosome ul, complete sequence Length = 105327 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 477 ttctgcttgtggaggagaaaa 497 ||||||||||||||||||||| Sbjct: 41811 ttctgcttgtggaggagaaaa 41831
>gb|AC109180.20| Mus musculus chromosome 10, clone RP23-13J14, complete sequence Length = 212628 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 346 tcaatgggaaaggaagctctt 366 ||||||||||||||||||||| Sbjct: 175269 tcaatgggaaaggaagctctt 175289
>dbj|AB014522.1| Homo sapiens mRNA for KIAA0622 protein, partial cds Length = 6951 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 434 tagtagcttcatcttgctccc 454 ||||||||||||||||||||| Sbjct: 3795 tagtagcttcatcttgctccc 3775
>gb|AF499719.1| Thellungiella halophila putative selenium-binding protein mRNA, complete cds Length = 1509 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 233 ttttggtaccaacctcgtca 252 |||||||||||||||||||| Sbjct: 509 ttttggtaccaacctcgtca 528
>gb|AC006044.2| Homo sapiens BAC clone RP11-539B24 from 7, complete sequence Length = 141509 Score = 40.1 bits (20), Expect = 9.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 617 caccagctgaagaattactgcaacatgc 644 |||||||||||||| ||| ||||||||| Sbjct: 49609 caccagctgaagaagtacagcaacatgc 49582
>emb|AL449165.1| Human DNA sequence from clone RP11-533E16 on chromosome 6, complete sequence Length = 57313 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 558 aacttccttccatgaatcat 577 |||||||||||||||||||| Sbjct: 5018 aacttccttccatgaatcat 4999
>emb|AL121916.14|HSJ189G13 Human DNA sequence from clone RP1-189G13 on chromosome 20 Contains the RPL7AL2 gene for ribosomal protein L7a like 2 (pseudogene) and part of a ribosomal protein S4 pseudogene, complete sequence Length = 100167 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 ttgcaaggactggcaagtcc 118 |||||||||||||||||||| Sbjct: 24880 ttgcaaggactggcaagtcc 24899
>gb|AC164638.4| Mus musculus BAC clone RP23-198N12 from chromosome 7, complete sequence Length = 242297 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 catacaacacataacaaatt 78 |||||||||||||||||||| Sbjct: 69968 catacaacacataacaaatt 69949
>emb|AL132969.2|ATF8J2 Arabidopsis thaliana DNA chromosome 3, BAC clone F8J2 Length = 99814 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 cattaacatacaacacataa 72 |||||||||||||||||||| Sbjct: 99133 cattaacatacaacacataa 99152
>gb|AC119750.2| Homo sapiens chromosome 1 clone RP11-459K23, complete sequence Length = 171596 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 337 tgtgacaattcaatgggaaa 356 |||||||||||||||||||| Sbjct: 76120 tgtgacaattcaatgggaaa 76101
>gb|AC099793.2| Homo sapiens chromosome 1 clone RP11-565N2, complete sequence Length = 169841 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 337 tgtgacaattcaatgggaaa 356 |||||||||||||||||||| Sbjct: 129101 tgtgacaattcaatgggaaa 129082
>gb|AC157819.5| Mus musculus chromosome 3, clone RP24-273H20, complete sequence Length = 151601 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 taccgcaatttcttgaaaat 158 |||||||||||||||||||| Sbjct: 13926 taccgcaatttcttgaaaat 13907
>emb|Y12736.2|LLCPJW565 Lactococcus lactis subsp. cremoris plasmid pJW565 DNA, LlaBIIM, LlaBIIR genes and orfX Length = 12828 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 aatttcttgaaaatacacta 164 |||||||||||||||||||| Sbjct: 8201 aatttcttgaaaatacacta 8182
>gb|AC103937.16| Mus musculus chromosome 3, clone RP23-229C5, complete sequence Length = 179805 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 taccgcaatttcttgaaaat 158 |||||||||||||||||||| Sbjct: 87184 taccgcaatttcttgaaaat 87165
>emb|BX001020.6| Mouse DNA sequence from clone RP23-167B1 on chromosome 4, complete sequence Length = 74555 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 346 tcaatgggaaaggaagctcttggc 369 ||||||||||| |||||||||||| Sbjct: 32964 tcaatgggaaaagaagctcttggc 32941 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,247,760 Number of Sequences: 3902068 Number of extensions: 5247760 Number of successful extensions: 91700 Number of sequences better than 10.0: 43 Number of HSP's better than 10.0 without gapping: 43 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 91582 Number of HSP's gapped (non-prelim): 118 length of query: 673 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 650 effective length of database: 17,143,297,704 effective search space: 11143143507600 effective search space used: 11143143507600 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)