>emb|X97771.1|HVPSII10K H.vulgare mRNA for PSII 10kD protein
          Length = 575

 Score =  333 bits (168), Expect = 1e-88
 Identities = 170/171 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttactganttgcgggtagtgatatttgtatccattacatatgtcctgacggttataat 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 atttactgatttgcgggtagtgatatttgtatccattacatatgtcctgacggttataat 498

                                                                       
Query: 61  ccgcactattatacacatcgtttggtgcatagcttggtttgctgcacataggcttcagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ccgcactattatacacatcgtttggtgcatagcttggtttgctgcacataggcttcagga 438

                                                              
Query: 121 agccaaggcgctagtactgtagacaagaagagcaccgcccagcagaattcc 171
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 agccaaggcgctagtactgtagacaagaagagcaccgcccagcagaattcc 387

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 79.8 bits (40), Expect = 2e-12
 Identities = 55/60 (91%)
 Strand = Plus / Minus

                                                                           
Query: 112     gcttcaggaagccaaggcgctagtactgtagacaagaagagcaccgcccagcagaattcc 171
               |||||| ||||||||||| |||||| |||||||||||||||||||  |||||||||||||
Sbjct: 2490122 gcttcaagaagccaaggcactagtattgtagacaagaagagcaccagccagcagaattcc 2490063

>dbj|AP004263.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0022E03
          Length = 163032

 Score = 79.8 bits (40), Expect = 2e-12
 Identities = 55/60 (91%)
 Strand = Plus / Minus

                                                                         
Query: 112   gcttcaggaagccaaggcgctagtactgtagacaagaagagcaccgcccagcagaattcc 171
             |||||| ||||||||||| |||||| |||||||||||||||||||  |||||||||||||
Sbjct: 55102 gcttcaagaagccaaggcactagtattgtagacaagaagagcaccagccagcagaattcc 55043

>ref|XM_476620.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 405

 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 49/53 (92%)
 Strand = Plus / Minus

                                                                
Query: 119 gaagccaaggcgctagtactgtagacaagaagagcaccgcccagcagaattcc 171
           ||||||||||| |||||| |||||||||||||||||||  |||||||||||||
Sbjct: 401 gaagccaaggcactagtattgtagacaagaagagcaccagccagcagaattcc 349

>gb|AC113547.27| Mus musculus chromosome 12, clone RP23-263J2, complete sequence
          Length = 197242

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 133  agtactgtagacaagaagag 152
            ||||||||||||||||||||
Sbjct: 4569 agtactgtagacaagaagag 4550

>emb|Z99122.2|BSUB0019 Bacillus subtilis complete genome (section 19 of 21): from 3608981 to
              3809670
          Length = 200690

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 94     ttggtttgctgcacataggc 113
              ||||||||||||||||||||
Sbjct: 125094 ttggtttgctgcacataggc 125075

>emb|Z92952.1|BSZ92952 B.subtilis ywq[A,B,C,D,E,F,G,H,I,J,K,L,M,N,O] genes
          Length = 14047

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 94   ttggtttgctgcacataggc 113
            ||||||||||||||||||||
Sbjct: 1312 ttggtttgctgcacataggc 1331

>dbj|AB210421.1| Ciona intestinalis mRNA for transcription factor protein, complete
           cds, clone: citb004m11
          Length = 2001

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 76  catcgtttggtgcatagctt 95
           ||||||||||||||||||||
Sbjct: 461 catcgtttggtgcatagctt 442

>gb|AC154300.2| Mus musculus BAC clone RP23-390F4 from 12, complete sequence
          Length = 187014

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 133    agtactgtagacaagaagag 152
              ||||||||||||||||||||
Sbjct: 166431 agtactgtagacaagaagag 166412

>dbj|AK116021.1| Ciona intestinalis cDNA, clone:citb004m11, full insert sequence
          Length = 2001

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 76  catcgtttggtgcatagctt 95
           ||||||||||||||||||||
Sbjct: 461 catcgtttggtgcatagctt 442

>gb|AE000661.1|HUAE000661 Homo sapiens T-cell receptor alpha delta locus from bases 752679 to
              1000555 (section 4 of 5) of the Complete Nucleotide
              Sequence
          Length = 247877

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 25     atttgtatccattacatat 43
              |||||||||||||||||||
Sbjct: 191115 atttgtatccattacatat 191133

>ref|XM_965886.1| PREDICTED: Tribolium castaneum similar to CG8397-PA (LOC659594),
           mRNA
          Length = 669

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 150 gagcaccgcccagcagaat 168
           |||||||||||||||||||
Sbjct: 618 gagcaccgcccagcagaat 636

>emb|BX897699.1| Bartonella henselae strain Houston-1, complete genome
          Length = 1931047

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 135   tactgtagacaagaagagc 153
             |||||||||||||||||||
Sbjct: 28001 tactgtagacaagaagagc 28019

>ref|NG_001332.1| Homo sapiens T cell receptor alpha delta locus (TCRA/TCRD) on chromosome
              14
          Length = 1071646

 Score = 38.2 bits (19), Expect = 8.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 25     atttgtatccattacatat 43
              |||||||||||||||||||
Sbjct: 943793 atttgtatccattacatat 943811


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,141,617
Number of Sequences: 3902068
Number of extensions: 1141617
Number of successful extensions: 96023
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 95952
Number of HSP's gapped (non-prelim): 71
length of query: 171
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 149
effective length of database: 17,147,199,772
effective search space: 2554932766028
effective search space used: 2554932766028
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)