| Clone Name | rbaal13l16 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_476762.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1406 Score = 357 bits (180), Expect = 3e-95 Identities = 342/396 (86%) Strand = Plus / Minus Query: 285 gaatccaaatatggatttgatagcattgatggcgttctcattgataaacgattcatcgta 344 ||||||||| | ||||||||| || ||||| || ||||||||||| |||||||| ||||| Sbjct: 1086 gaatccaaacaaggatttgatggcgttgatagcattctcattgatgaacgattcgtcgta 1027 Query: 345 cttgtttagcagggtggcgaactcctccgagttcctcaagtttgctaaatccgggtcggt 404 |||||| |||||| | ||| ||||| | |||||||||||| ||| |||||||||||| Sbjct: 1026 cttgttcagcaggacgttgaattcctcagttttcctcaagttttctagatccgggtcggt 967 Query: 405 gcgaatcctcttgaagtcttcatagcctgctttcatggcttcttcaagtgcagaaaggcc 464 |||||| ||||||||||||||||| |||||||||| ||| ||||| |||||||||| || Sbjct: 966 gcgaattctcttgaagtcttcataacctgctttcagggcatcttccagtgcagaaatacc 907 Query: 465 agcttgtatccggtcgagcttcgaataacagcacgcgacattgtagctggctacggaagc 524 ||||||||||||||| |||||||| |||||||| || ||||||||||| |||| ||||| Sbjct: 906 agcttgtatccggtcaagcttcgagtaacagcaggcaacattgtagctagctatggaaga 847 Query: 525 ttcatcaatctctggttttgaccccagcaccgactcgaacttctctaatgcctcctcgta 584 |||| ||||| |||||||| |||| || |||||||||||||| ||||||||||| || Sbjct: 846 ctcattgatctcaggttttgatcccaaaactgactcgaacttctccaatgcctcctcata 787 Query: 585 ttttccatccttgtacagctttagccccatgcgaaggtcatcttctctttggatcttctg 644 ||| ||||||||||||||| | |||||||||||||| || || ||||| || |||||||| Sbjct: 786 tttaccatccttgtacagcctcagccccatgcgaagatcctcctctctctgcatcttctg 727 Query: 645 ctccatcttcttctggtaattttgcatctgaatctc 680 |||||||||| ||||||||||||||| ||| ||||| Sbjct: 726 ctccatcttcctctggtaattttgcagctggatctc 691
>ref|XM_476763.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1105 Score = 357 bits (180), Expect = 3e-95 Identities = 342/396 (86%) Strand = Plus / Minus Query: 285 gaatccaaatatggatttgatagcattgatggcgttctcattgataaacgattcatcgta 344 ||||||||| | ||||||||| || ||||| || ||||||||||| |||||||| ||||| Sbjct: 787 gaatccaaacaaggatttgatggcgttgatagcattctcattgatgaacgattcgtcgta 728 Query: 345 cttgtttagcagggtggcgaactcctccgagttcctcaagtttgctaaatccgggtcggt 404 |||||| |||||| | ||| ||||| | |||||||||||| ||| |||||||||||| Sbjct: 727 cttgttcagcaggacgttgaattcctcagttttcctcaagttttctagatccgggtcggt 668 Query: 405 gcgaatcctcttgaagtcttcatagcctgctttcatggcttcttcaagtgcagaaaggcc 464 |||||| ||||||||||||||||| |||||||||| ||| ||||| |||||||||| || Sbjct: 667 gcgaattctcttgaagtcttcataacctgctttcagggcatcttccagtgcagaaatacc 608 Query: 465 agcttgtatccggtcgagcttcgaataacagcacgcgacattgtagctggctacggaagc 524 ||||||||||||||| |||||||| |||||||| || ||||||||||| |||| ||||| Sbjct: 607 agcttgtatccggtcaagcttcgagtaacagcaggcaacattgtagctagctatggaaga 548 Query: 525 ttcatcaatctctggttttgaccccagcaccgactcgaacttctctaatgcctcctcgta 584 |||| ||||| |||||||| |||| || |||||||||||||| ||||||||||| || Sbjct: 547 ctcattgatctcaggttttgatcccaaaactgactcgaacttctccaatgcctcctcata 488 Query: 585 ttttccatccttgtacagctttagccccatgcgaaggtcatcttctctttggatcttctg 644 ||| ||||||||||||||| | |||||||||||||| || || ||||| || |||||||| Sbjct: 487 tttaccatccttgtacagcctcagccccatgcgaagatcctcctctctctgcatcttctg 428 Query: 645 ctccatcttcttctggtaattttgcatctgaatctc 680 |||||||||| ||||||||||||||| ||| ||||| Sbjct: 427 ctccatcttcctctggtaattttgcagctggatctc 392
>gb|AF272978.1|AF272978 Oryza sativa putative tyrosine phosphatase mRNA, partial cds Length = 1036 Score = 357 bits (180), Expect = 3e-95 Identities = 342/396 (86%) Strand = Plus / Minus Query: 285 gaatccaaatatggatttgatagcattgatggcgttctcattgataaacgattcatcgta 344 ||||||||| | ||||||||| || ||||| || ||||||||||| |||||||| ||||| Sbjct: 711 gaatccaaacaaggatttgatggcgttgatagcattctcattgatgaacgattcgtcgta 652 Query: 345 cttgtttagcagggtggcgaactcctccgagttcctcaagtttgctaaatccgggtcggt 404 |||||| |||||| | ||| ||||| | |||||||||||| ||| |||||||||||| Sbjct: 651 cttgttcagcaggacgttgaattcctcagttttcctcaagttttctagatccgggtcggt 592 Query: 405 gcgaatcctcttgaagtcttcatagcctgctttcatggcttcttcaagtgcagaaaggcc 464 |||||| ||||||||||||||||| |||||||||| ||| ||||| |||||||||| || Sbjct: 591 gcgaattctcttgaagtcttcataacctgctttcagggcatcttccagtgcagaaatacc 532 Query: 465 agcttgtatccggtcgagcttcgaataacagcacgcgacattgtagctggctacggaagc 524 ||||||||||||||| |||||||| |||||||| || ||||||||||| |||| ||||| Sbjct: 531 agcttgtatccggtcaagcttcgagtaacagcaggcaacattgtagctagctatggaaga 472 Query: 525 ttcatcaatctctggttttgaccccagcaccgactcgaacttctctaatgcctcctcgta 584 |||| ||||| |||||||| |||| || |||||||||||||| ||||||||||| || Sbjct: 471 ctcattgatctcaggttttgatcccaaaactgactcgaacttctccaatgcctcctcata 412 Query: 585 ttttccatccttgtacagctttagccccatgcgaaggtcatcttctctttggatcttctg 644 ||| ||||||||||||||| | |||||||||||||| || || ||||| || |||||||| Sbjct: 411 tttaccatccttgtacagcctcagccccatgcgaagatcctcctctctctgcatcttctg 352 Query: 645 ctccatcttcttctggtaattttgcatctgaatctc 680 |||||||||| ||||||||||||||| ||| ||||| Sbjct: 351 ctccatcttcctctggtaattttgcagctggatctc 316
>dbj|AK066475.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013068C23, full insert sequence Length = 1105 Score = 357 bits (180), Expect = 3e-95 Identities = 342/396 (86%) Strand = Plus / Minus Query: 285 gaatccaaatatggatttgatagcattgatggcgttctcattgataaacgattcatcgta 344 ||||||||| | ||||||||| || ||||| || ||||||||||| |||||||| ||||| Sbjct: 787 gaatccaaacaaggatttgatggcgttgatagcattctcattgatgaacgattcgtcgta 728 Query: 345 cttgtttagcagggtggcgaactcctccgagttcctcaagtttgctaaatccgggtcggt 404 |||||| |||||| | ||| ||||| | |||||||||||| ||| |||||||||||| Sbjct: 727 cttgttcagcaggacgttgaattcctcagttttcctcaagttttctagatccgggtcggt 668 Query: 405 gcgaatcctcttgaagtcttcatagcctgctttcatggcttcttcaagtgcagaaaggcc 464 |||||| ||||||||||||||||| |||||||||| ||| ||||| |||||||||| || Sbjct: 667 gcgaattctcttgaagtcttcataacctgctttcagggcatcttccagtgcagaaatacc 608 Query: 465 agcttgtatccggtcgagcttcgaataacagcacgcgacattgtagctggctacggaagc 524 ||||||||||||||| |||||||| |||||||| || ||||||||||| |||| ||||| Sbjct: 607 agcttgtatccggtcaagcttcgagtaacagcaggcaacattgtagctagctatggaaga 548 Query: 525 ttcatcaatctctggttttgaccccagcaccgactcgaacttctctaatgcctcctcgta 584 |||| ||||| |||||||| |||| || |||||||||||||| ||||||||||| || Sbjct: 547 ctcattgatctcaggttttgatcccaaaactgactcgaacttctccaatgcctcctcata 488 Query: 585 ttttccatccttgtacagctttagccccatgcgaaggtcatcttctctttggatcttctg 644 ||| ||||||||||||||| | |||||||||||||| || || ||||| || |||||||| Sbjct: 487 tttaccatccttgtacagcctcagccccatgcgaagatcctcctctctctgcatcttctg 428 Query: 645 ctccatcttcttctggtaattttgcatctgaatctc 680 |||||||||| ||||||||||||||| ||| ||||| Sbjct: 427 ctccatcttcctctggtaattttgcagctggatctc 392
>dbj|AK062132.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-E07, full insert sequence Length = 1406 Score = 357 bits (180), Expect = 3e-95 Identities = 342/396 (86%) Strand = Plus / Minus Query: 285 gaatccaaatatggatttgatagcattgatggcgttctcattgataaacgattcatcgta 344 ||||||||| | ||||||||| || ||||| || ||||||||||| |||||||| ||||| Sbjct: 1086 gaatccaaacaaggatttgatggcgttgatagcattctcattgatgaacgattcgtcgta 1027 Query: 345 cttgtttagcagggtggcgaactcctccgagttcctcaagtttgctaaatccgggtcggt 404 |||||| |||||| | ||| ||||| | |||||||||||| ||| |||||||||||| Sbjct: 1026 cttgttcagcaggacgttgaattcctcagttttcctcaagttttctagatccgggtcggt 967 Query: 405 gcgaatcctcttgaagtcttcatagcctgctttcatggcttcttcaagtgcagaaaggcc 464 |||||| ||||||||||||||||| |||||||||| ||| ||||| |||||||||| || Sbjct: 966 gcgaattctcttgaagtcttcataacctgctttcagggcatcttccagtgcagaaatacc 907 Query: 465 agcttgtatccggtcgagcttcgaataacagcacgcgacattgtagctggctacggaagc 524 ||||||||||||||| |||||||| |||||||| || ||||||||||| |||| ||||| Sbjct: 906 agcttgtatccggtcaagcttcgagtaacagcaggcaacattgtagctagctatggaaga 847 Query: 525 ttcatcaatctctggttttgaccccagcaccgactcgaacttctctaatgcctcctcgta 584 |||| ||||| |||||||| |||| || |||||||||||||| ||||||||||| || Sbjct: 846 ctcattgatctcaggttttgatcccaaaactgactcgaacttctccaatgcctcctcata 787 Query: 585 ttttccatccttgtacagctttagccccatgcgaaggtcatcttctctttggatcttctg 644 ||| ||||||||||||||| | |||||||||||||| || || ||||| || |||||||| Sbjct: 786 tttaccatccttgtacagcctcagccccatgcgaagatcctcctctctctgcatcttctg 727 Query: 645 ctccatcttcttctggtaattttgcatctgaatctc 680 |||||||||| ||||||||||||||| ||| ||||| Sbjct: 726 ctccatcttcctctggtaattttgcagctggatctc 691
>emb|AJ417523.1|OSA417523 Oryza sativa partial mRNA for putative tyrosine phosphatase (xd9 gene) Length = 583 Score = 276 bits (139), Expect = 9e-71 Identities = 274/319 (85%) Strand = Plus / Minus Query: 285 gaatccaaatatggatttgatagcattgatggcgttctcattgataaacgattcatcgta 344 ||||||||| | ||||||||| || ||||| || ||||||||||| |||||||| ||||| Sbjct: 326 gaatccaaacaaggatttgatggcgttgatagcattctcattgatgaacgattcgtcgta 267 Query: 345 cttgtttagcagggtggcgaactcctccgagttcctcaagtttgctaaatccgggtcggt 404 |||||| |||||| | ||| ||||| | |||||||||||| ||| |||||||||||| Sbjct: 266 cttgttcagcaggacgttgaattcctcagttttcctcaagttttctagatccgggtcggt 207 Query: 405 gcgaatcctcttgaagtcttcatagcctgctttcatggcttcttcaagtgcagaaaggcc 464 |||||| ||||||||||||||||| |||||||||| ||| ||||| |||||||||| || Sbjct: 206 gcgaattctcttgaagtcttcataacctgctttcagggcatcttccagtgcagaaatacc 147 Query: 465 agcttgtatccggtcgagcttcgaataacagcacgcgacattgtagctggctacggaagc 524 ||||||||||||||| |||||||| |||||||| || ||||||||||| |||| ||||| Sbjct: 146 agcttgtatccggtcaagcttcgagtaacagcaggcaacattgtagctagctatggaaga 87 Query: 525 ttcatcaatctctggttttgaccccagcaccgactcgaacttctctaatgcctcctcgta 584 |||| ||||| |||||||| |||| || |||||||||||||| || |||||||| || Sbjct: 86 ctcattgatctcaggttttgatcccaaaactgactcgaacttctccaacgcctcctcata 27 Query: 585 ttttccatccttgtacagc 603 ||| ||||||||||||||| Sbjct: 26 tttaccatccttgtacagc 8
>gb|AY108576.1| Zea mays PCO117716 mRNA sequence Length = 871 Score = 137 bits (69), Expect = 6e-29 Identities = 120/137 (87%) Strand = Plus / Plus Query: 544 gaccccagcaccgactcgaacttctctaatgcctcctcgtattttccatccttgtacagc 603 |||||||| ||||||||||||||||| | ||||||||||| || || |||||||||||| Sbjct: 524 gaccccagaaccgactcgaacttctccagcgcctcctcgtacttcccgtccttgtacagc 583 Query: 604 tttagccccatgcgaaggtcatcttctctttggatcttctgctccatcttcttctggtaa 663 || ||||||||||| ||||| ||||| || || |||||||||||||||||| ||||||| Sbjct: 584 ttgagccccatgcggaggtcctcttccctctgcatcttctgctccatcttcctctggtag 643 Query: 664 ttttgcatctgaatctc 680 ||||||| ||| ||||| Sbjct: 644 ttttgcagctggatctc 660 Score = 81.8 bits (41), Expect = 3e-12 Identities = 110/133 (82%) Strand = Plus / Plus Query: 301 ttgatagcattgatggcgttctcattgataaacgattcatcgtacttgtttagcagggtg 360 ||||| || |||||||||||||| ||||| ||||| || ||||| || || |||| || Sbjct: 281 ttgatggcgttgatggcgttctcgttgatgaacgactcgtcgtagttcttcagcaagggc 340 Query: 361 gcgaactcctccgagttcctcaagtttgctaaatccgggtcggtgcgaatcctcttgaag 420 ||||||||||||| ||||||| ||| || | ||||||||||||||||| ||||||| Sbjct: 341 tcgaactcctccgacttcctcaggttcgcgagatccgggtcggtgcgaactgccttgaag 400 Query: 421 tcttcatagcctg 433 |||||||| |||| Sbjct: 401 tcttcataccctg 413
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 103 bits (52), Expect = 8e-19 Identities = 112/132 (84%) Strand = Plus / Minus Query: 285 gaatccaaatatggatttgatagcattgatggcgttctcattgataaacgattcatcgta 344 ||||||||| | ||||||||| || ||||| || ||||||||||| |||||||| ||||| Sbjct: 3793800 gaatccaaacaaggatttgatggcgttgatagcattctcattgatgaacgattcgtcgta 3793741 Query: 345 cttgtttagcagggtggcgaactcctccgagttcctcaagtttgctaaatccgggtcggt 404 |||||| |||||| | ||| ||||| | |||||||||||| ||| |||||||||||| Sbjct: 3793740 cttgttcagcaggacgttgaattcctcagttttcctcaagttttctagatccgggtcggt 3793681 Query: 405 gcgaatcctctt 416 |||||| ||||| Sbjct: 3793680 gcgaattctctt 3793669 Score = 97.6 bits (49), Expect = 5e-17 Identities = 103/121 (85%) Strand = Plus / Minus Query: 474 ccggtcgagcttcgaataacagcacgcgacattgtagctggctacggaagcttcatcaat 533 |||||| |||||||| |||||||| || ||||||||||| |||| ||||| |||| || Sbjct: 3793454 ccggtcaagcttcgagtaacagcaggcaacattgtagctagctatggaagactcattgat 3793395 Query: 534 ctctggttttgaccccagcaccgactcgaacttctctaatgcctcctcgtattttccatc 593 ||| |||||||| |||| || |||||||||||||| ||||||||||| ||||| ||||| Sbjct: 3793394 ctcaggttttgatcccaaaactgactcgaacttctccaatgcctcctcatatttaccatc 3793335 Query: 594 c 594 | Sbjct: 3793334 c 3793334 Score = 89.7 bits (45), Expect = 1e-14 Identities = 69/77 (89%) Strand = Plus / Minus Query: 594 cttgtacagctttagccccatgcgaaggtcatcttctctttggatcttctgctccatctt 653 |||||||||| | |||||||||||||| || || ||||| || ||||||||||||||||| Sbjct: 3793246 cttgtacagcctcagccccatgcgaagatcctcctctctctgcatcttctgctccatctt 3793187 Query: 654 cttctggtaattttgca 670 | ||||||||||||||| Sbjct: 3793186 cctctggtaattttgca 3793170 Score = 73.8 bits (37), Expect = 7e-10 Identities = 55/61 (90%) Strand = Plus / Minus Query: 414 cttgaagtcttcatagcctgctttcatggcttcttcaagtgcagaaaggccagcttgtat 473 ||||||||||||||| |||||||||| ||| ||||| |||||||||| ||||||||||| Sbjct: 3793592 cttgaagtcttcataacctgctttcagggcatcttccagtgcagaaataccagcttgtat 3793533 Query: 474 c 474 | Sbjct: 3793532 c 3793532
>dbj|AP004670.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0496D04 Length = 197358 Score = 103 bits (52), Expect = 8e-19 Identities = 112/132 (84%) Strand = Plus / Minus Query: 285 gaatccaaatatggatttgatagcattgatggcgttctcattgataaacgattcatcgta 344 ||||||||| | ||||||||| || ||||| || ||||||||||| |||||||| ||||| Sbjct: 32912 gaatccaaacaaggatttgatggcgttgatagcattctcattgatgaacgattcgtcgta 32853 Query: 345 cttgtttagcagggtggcgaactcctccgagttcctcaagtttgctaaatccgggtcggt 404 |||||| |||||| | ||| ||||| | |||||||||||| ||| |||||||||||| Sbjct: 32852 cttgttcagcaggacgttgaattcctcagttttcctcaagttttctagatccgggtcggt 32793 Query: 405 gcgaatcctctt 416 |||||| ||||| Sbjct: 32792 gcgaattctctt 32781 Score = 97.6 bits (49), Expect = 5e-17 Identities = 103/121 (85%) Strand = Plus / Minus Query: 474 ccggtcgagcttcgaataacagcacgcgacattgtagctggctacggaagcttcatcaat 533 |||||| |||||||| |||||||| || ||||||||||| |||| ||||| |||| || Sbjct: 32566 ccggtcaagcttcgagtaacagcaggcaacattgtagctagctatggaagactcattgat 32507 Query: 534 ctctggttttgaccccagcaccgactcgaacttctctaatgcctcctcgtattttccatc 593 ||| |||||||| |||| || |||||||||||||| ||||||||||| ||||| ||||| Sbjct: 32506 ctcaggttttgatcccaaaactgactcgaacttctccaatgcctcctcatatttaccatc 32447 Query: 594 c 594 | Sbjct: 32446 c 32446 Score = 89.7 bits (45), Expect = 1e-14 Identities = 69/77 (89%) Strand = Plus / Minus Query: 594 cttgtacagctttagccccatgcgaaggtcatcttctctttggatcttctgctccatctt 653 |||||||||| | |||||||||||||| || || ||||| || ||||||||||||||||| Sbjct: 32358 cttgtacagcctcagccccatgcgaagatcctcctctctctgcatcttctgctccatctt 32299 Query: 654 cttctggtaattttgca 670 | ||||||||||||||| Sbjct: 32298 cctctggtaattttgca 32282 Score = 73.8 bits (37), Expect = 7e-10 Identities = 55/61 (90%) Strand = Plus / Minus Query: 414 cttgaagtcttcatagcctgctttcatggcttcttcaagtgcagaaaggccagcttgtat 473 ||||||||||||||| |||||||||| ||| ||||| |||||||||| ||||||||||| Sbjct: 32704 cttgaagtcttcataacctgctttcagggcatcttccagtgcagaaataccagcttgtat 32645 Query: 474 c 474 | Sbjct: 32644 c 32644
>dbj|AP005840.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0050F10 Length = 151986 Score = 103 bits (52), Expect = 8e-19 Identities = 112/132 (84%) Strand = Plus / Minus Query: 285 gaatccaaatatggatttgatagcattgatggcgttctcattgataaacgattcatcgta 344 ||||||||| | ||||||||| || ||||| || ||||||||||| |||||||| ||||| Sbjct: 138151 gaatccaaacaaggatttgatggcgttgatagcattctcattgatgaacgattcgtcgta 138092 Query: 345 cttgtttagcagggtggcgaactcctccgagttcctcaagtttgctaaatccgggtcggt 404 |||||| |||||| | ||| ||||| | |||||||||||| ||| |||||||||||| Sbjct: 138091 cttgttcagcaggacgttgaattcctcagttttcctcaagttttctagatccgggtcggt 138032 Query: 405 gcgaatcctctt 416 |||||| ||||| Sbjct: 138031 gcgaattctctt 138020 Score = 97.6 bits (49), Expect = 5e-17 Identities = 103/121 (85%) Strand = Plus / Minus Query: 474 ccggtcgagcttcgaataacagcacgcgacattgtagctggctacggaagcttcatcaat 533 |||||| |||||||| |||||||| || ||||||||||| |||| ||||| |||| || Sbjct: 137805 ccggtcaagcttcgagtaacagcaggcaacattgtagctagctatggaagactcattgat 137746 Query: 534 ctctggttttgaccccagcaccgactcgaacttctctaatgcctcctcgtattttccatc 593 ||| |||||||| |||| || |||||||||||||| ||||||||||| ||||| ||||| Sbjct: 137745 ctcaggttttgatcccaaaactgactcgaacttctccaatgcctcctcatatttaccatc 137686 Query: 594 c 594 | Sbjct: 137685 c 137685 Score = 89.7 bits (45), Expect = 1e-14 Identities = 69/77 (89%) Strand = Plus / Minus Query: 594 cttgtacagctttagccccatgcgaaggtcatcttctctttggatcttctgctccatctt 653 |||||||||| | |||||||||||||| || || ||||| || ||||||||||||||||| Sbjct: 137597 cttgtacagcctcagccccatgcgaagatcctcctctctctgcatcttctgctccatctt 137538 Query: 654 cttctggtaattttgca 670 | ||||||||||||||| Sbjct: 137537 cctctggtaattttgca 137521 Score = 73.8 bits (37), Expect = 7e-10 Identities = 55/61 (90%) Strand = Plus / Minus Query: 414 cttgaagtcttcatagcctgctttcatggcttcttcaagtgcagaaaggccagcttgtat 473 ||||||||||||||| |||||||||| ||| ||||| |||||||||| ||||||||||| Sbjct: 137943 cttgaagtcttcataacctgctttcagggcatcttccagtgcagaaataccagcttgtat 137884 Query: 474 c 474 | Sbjct: 137883 c 137883
>gb|AC152752.18| Medicago truncatula clone mth2-89c9, complete sequence Length = 117577 Score = 65.9 bits (33), Expect = 2e-07 Identities = 48/53 (90%) Strand = Plus / Minus Query: 286 aatccaaatatggatttgatagcattgatggcgttctcattgataaacgattc 338 |||||||| || |||||||| |||||||||||| ||||||||||||| ||||| Sbjct: 99051 aatccaaaaattgatttgatcgcattgatggcgctctcattgataaatgattc 98999
>gb|AF349572.1| Glycine max SHOOT1 protein (SHOOT1) mRNA, complete cds Length = 1372 Score = 65.9 bits (33), Expect = 2e-07 Identities = 57/65 (87%) Strand = Plus / Minus Query: 277 ttcttaccgaatccaaatatggatttgatagcattgatggcgttctcattgataaacgat 336 |||||||| |||||||| | |||||||| ||||||||||| ||||||||||| || ||| Sbjct: 1161 ttcttaccaaatccaaaaagagatttgatggcattgatggcattctcattgatgaaagat 1102 Query: 337 tcatc 341 ||||| Sbjct: 1101 tcatc 1097
>gb|AC035139.11| Homo sapiens chromosome 10 clone RP11-563N6, complete sequence Length = 210472 Score = 44.1 bits (22), Expect = 0.62 Identities = 22/22 (100%) Strand = Plus / Plus Query: 454 gcagaaaggccagcttgtatcc 475 |||||||||||||||||||||| Sbjct: 95448 gcagaaaggccagcttgtatcc 95469
>gb|AC022533.10| Homo sapiens chromosome 10 clone RP11-230D19, complete sequence Length = 174569 Score = 44.1 bits (22), Expect = 0.62 Identities = 22/22 (100%) Strand = Plus / Minus Query: 454 gcagaaaggccagcttgtatcc 475 |||||||||||||||||||||| Sbjct: 42083 gcagaaaggccagcttgtatcc 42062
>emb|BX000520.12| Mouse DNA sequence from clone RP23-261N8 on chromosome X, complete sequence Length = 112153 Score = 44.1 bits (22), Expect = 0.62 Identities = 22/22 (100%) Strand = Plus / Minus Query: 57 ggatgtacaaagtgtatgttca 78 |||||||||||||||||||||| Sbjct: 10920 ggatgtacaaagtgtatgttca 10899
>ref|NM_133957.2| Mus musculus nuclear factor of activated T-cells 5 (Nfat5), transcript variant a, mRNA Length = 13040 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 432 tgctttcatggcttcttcaag 452 ||||||||||||||||||||| Sbjct: 1799 tgctttcatggcttcttcaag 1779
>gb|AY050663.1| Mus musculus nuclear factor of activated T-cells 5 (Nfat5) mRNA, complete cds Length = 5992 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 432 tgctttcatggcttcttcaag 452 ||||||||||||||||||||| Sbjct: 1799 tgctttcatggcttcttcaag 1779
>ref|XM_623955.1| PREDICTED: Apis mellifera similar to ENSANGP00000014259 (LOC551563), mRNA Length = 2319 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 650 tcttcttctggtaattttgcatctg 674 ||||||||| ||||||||||||||| Sbjct: 734 tcttcttcttgtaattttgcatctg 710
>gb|AF453571.2| Mus musculus transcription factor NFAT5 (Nfat5) mRNA, complete cds Length = 13040 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 432 tgctttcatggcttcttcaag 452 ||||||||||||||||||||| Sbjct: 1799 tgctttcatggcttcttcaag 1779
>ref|NM_104423.2| Arabidopsis thaliana protein binding AT1G55480 mRNA, complete cds Length = 1329 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 664 ttttgcatctgaatctctct 683 |||||||||||||||||||| Sbjct: 755 ttttgcatctgaatctctct 736
>gb|AC122669.6| Rattus norvegicus 4 BAC CH230-172C22 (Children's Hospital Oakland Research Institute) complete sequence Length = 227955 Score = 40.1 bits (20), Expect = 9.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 507 gtagctggctacggaagcttcatcaatc 534 |||||||| |||||||||||||| |||| Sbjct: 137108 gtagctgggtacggaagcttcattaatc 137135
>ref|NM_018823.1| Mus musculus nuclear factor of activated T-cells 5 (Nfat5), transcript variant b, mRNA Length = 4653 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 432 tgctttcatggcttcttcaa 451 |||||||||||||||||||| Sbjct: 1764 tgctttcatggcttcttcaa 1745
>gb|AC007387.4| Homo sapiens BAC clone RP11-372J12 from 2, complete sequence Length = 165704 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 aagaacaaactagaactagt 161 |||||||||||||||||||| Sbjct: 5323 aagaacaaactagaactagt 5342
>gb|AC145805.2| Xenopus tropicalis clone CH216-85O8, complete sequence Length = 166207 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 290 caaatatggatttgatagca 309 |||||||||||||||||||| Sbjct: 94795 caaatatggatttgatagca 94776
>gb|AC116546.1| Homo sapiens 3 BAC RP11-312H1 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 160421 Score = 40.1 bits (20), Expect = 9.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 639 cttctgctccatcttcttctggtaattt 666 |||||||| ||| ||||||||||||||| Sbjct: 115422 cttctgcttcattttcttctggtaattt 115449
>gb|AY079359.1| Arabidopsis thaliana unknown protein (At1g55480) mRNA, complete cds Length = 1039 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 664 ttttgcatctgaatctctct 683 |||||||||||||||||||| Sbjct: 617 ttttgcatctgaatctctct 598
>gb|AY039926.1| Arabidopsis thaliana unknown protein (At1g55480) mRNA, complete cds Length = 1306 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 664 ttttgcatctgaatctctct 683 |||||||||||||||||||| Sbjct: 711 ttttgcatctgaatctctct 692
>gb|AY119631.1| Drosophila melanogaster RE37229 full insert cDNA Length = 2395 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 452 gtgcagaaaggccagcttgt 471 |||||||||||||||||||| Sbjct: 601 gtgcagaaaggccagcttgt 582
>ref|NM_137068.2| Drosophila melanogaster RacGAP50C CG13345-RA (RacGAP50C), mRNA Length = 2388 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 452 gtgcagaaaggccagcttgt 471 |||||||||||||||||||| Sbjct: 601 gtgcagaaaggccagcttgt 582
>gb|AC007020.5| Arabidopsis thaliana chromosome 2 clone T3G21 map g4514, complete sequence Length = 82652 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 286 aatccaaatatggatttgat 305 |||||||||||||||||||| Sbjct: 41124 aatccaaatatggatttgat 41105
>gb|AC099008.1| Drosophila melanogaster, chromosome 2R, region 50B-50C, BAC clone BACR16G12, complete sequence Length = 154681 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 452 gtgcagaaaggccagcttgt 471 |||||||||||||||||||| Sbjct: 89533 gtgcagaaaggccagcttgt 89514
>gb|AF369980.1|AF369980 Mus musculus tonicity-responsive enhancer binding protein (Nfat5) mRNA, complete cds, alternatively spliced Length = 4734 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 432 tgctttcatggcttcttcaa 451 |||||||||||||||||||| Sbjct: 1830 tgctttcatggcttcttcaa 1811
>gb|AF200687.1|AF200687 Mus musculus transcription factor NFAT5 isoform b (NFAT5) mRNA, complete cds Length = 4653 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 432 tgctttcatggcttcttcaa 451 |||||||||||||||||||| Sbjct: 1764 tgctttcatggcttcttcaa 1745
>gb|AC006544.19| Homo sapiens chromosome 2 clone bac91a19 map 2p13, complete sequence Length = 234523 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 aagaacaaactagaactagt 161 |||||||||||||||||||| Sbjct: 134440 aagaacaaactagaactagt 134459
>gb|AC006543.7| Homo sapiens chromosome 2 clone bac172k1 map 2p13, complete sequence Length = 126228 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 aagaacaaactagaactagt 161 |||||||||||||||||||| Sbjct: 64697 aagaacaaactagaactagt 64716
>gb|AC007851.6|AC007851 Drosophila melanogaster, chromosome 2R, region 50C-50D, BAC clone BACR06M19, complete sequence Length = 183161 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 452 gtgcagaaaggccagcttgt 471 |||||||||||||||||||| Sbjct: 172964 gtgcagaaaggccagcttgt 172945
>emb|BX470254.7| Zebrafish DNA sequence from clone CH211-256M1 in linkage group 3, complete sequence Length = 146746 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 27 catttgcttcccaatggaggattg 50 |||||||||| ||||||||||||| Sbjct: 52548 catttgcttcacaatggaggattg 52571
>emb|BX818474.1|CNS0AB28 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL81ZA06 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1122 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 664 ttttgcatctgaatctctct 683 |||||||||||||||||||| Sbjct: 672 ttttgcatctgaatctctct 653
>dbj|AB190499.1| Arabidopsis thaliana ZKT mRNA for hypothetical protein, complete cds Length = 1238 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 664 ttttgcatctgaatctctct 683 |||||||||||||||||||| Sbjct: 726 ttttgcatctgaatctctct 707
>emb|BX841785.1|CNS09Y5L Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB66ZF05 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1155 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 664 ttttgcatctgaatctctct 683 |||||||||||||||||||| Sbjct: 673 ttttgcatctgaatctctct 654
>ref|XM_576970.1| PREDICTED: Rattus norvegicus similar to Telomerase-binding protein p23 (Hsp90 co-chaperone) (Progesterone receptor complex p23) (Sid 3177) (LOC501566), mRNA Length = 1607 Score = 40.1 bits (20), Expect = 9.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 641 tctgctccatcttcttctggtaattttgcatc 672 |||||||||||| |||||||||| | |||||| Sbjct: 795 tctgctccatctacttctggtaaatctgcatc 764
>gb|AY088606.1| Arabidopsis thaliana clone 8301 mRNA, complete sequence Length = 1175 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 664 ttttgcatctgaatctctct 683 |||||||||||||||||||| Sbjct: 755 ttttgcatctgaatctctct 736
>gb|AC151924.2| Phaeodactylum tricornutum clone JGIAHOK-5A15, complete sequence Length = 37174 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 667 tgcatctgaatctctctgag 686 |||||||||||||||||||| Sbjct: 3972 tgcatctgaatctctctgag 3991
>gb|AF228706.1|AF228706 Mus musculus NFATz2 (Nfatz2) mRNA, complete cds Length = 2371 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 432 tgctttcatggcttcttcaa 451 |||||||||||||||||||| Sbjct: 1829 tgctttcatggcttcttcaa 1810
>gb|BC087125.1| Rattus norvegicus similar to Sid3177p, mRNA (cDNA clone MGC:94875 IMAGE:7110309), complete cds Length = 1635 Score = 40.1 bits (20), Expect = 9.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 641 tctgctccatcttcttctggtaattttgcatc 672 |||||||||||| |||||||||| | |||||| Sbjct: 795 tctgctccatctacttctggtaaatctgcatc 764
>gb|AF162853.1|AF162853 Mus musculus Rel domain-containing transcription factor NFAT5 (Nfat5) mRNA, complete cds Length = 4627 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 432 tgctttcatggcttcttcaa 451 |||||||||||||||||||| Sbjct: 1986 tgctttcatggcttcttcaa 1967
>gb|AC005977.3|AC005977 Drosophila melanogaster, chromosome 2R, region 50C6-50C8, P1 clone DS04160, complete sequence Length = 69330 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 452 gtgcagaaaggccagcttgt 471 |||||||||||||||||||| Sbjct: 48754 gtgcagaaaggccagcttgt 48735
>gb|AE003817.3| Drosophila melanogaster chromosome 2R, section 33 of 73 of the complete sequence Length = 265472 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 452 gtgcagaaaggccagcttgt 471 |||||||||||||||||||| Sbjct: 264688 gtgcagaaaggccagcttgt 264707
>dbj|AK122381.1| Mus musculus mRNA for mKIAA0827 protein Length = 5481 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 432 tgctttcatggcttcttcaa 451 |||||||||||||||||||| Sbjct: 216 tgctttcatggcttcttcaa 197
>gb|AY986818.1| Arabidopsis thaliana GAN mRNA, complete cds Length = 1033 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 664 ttttgcatctgaatctctct 683 |||||||||||||||||||| Sbjct: 623 ttttgcatctgaatctctct 604
>emb|CR846103.8| Zebrafish DNA sequence from clone DKEY-28K9 in linkage group 3, complete sequence Length = 54792 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 27 catttgcttcccaatggaggattg 50 |||||||||| ||||||||||||| Sbjct: 2352 catttgcttcacaatggaggattg 2329
>emb|AL954851.5| Zebrafish DNA sequence from clone CH211-280J3, complete sequence Length = 177221 Score = 40.1 bits (20), Expect = 9.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 27 catttgcttcccaatggaggattg 50 |||||||||| ||||||||||||| Sbjct: 155939 catttgcttcacaatggaggattg 155916
>ref|NM_001014272.1| Rattus norvegicus similar to Sid3177p (LOC367808), mRNA Length = 1635 Score = 40.1 bits (20), Expect = 9.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 641 tctgctccatcttcttctggtaattttgcatc 672 |||||||||||| |||||||||| | |||||| Sbjct: 795 tctgctccatctacttctggtaaatctgcatc 764
>emb|AL831738.4| Mouse DNA sequence from clone RP23-451K12 on chromosome 4, complete sequence Length = 188894 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 535 tctggttttgaccccagcac 554 |||||||||||||||||||| Sbjct: 160173 tctggttttgaccccagcac 160154
>emb|AL929163.5| Mouse DNA sequence from clone RP23-450P9 on chromosome 2, complete sequence Length = 184256 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 catttggatgtacaaagtgt 71 |||||||||||||||||||| Sbjct: 113788 catttggatgtacaaagtgt 113807
>emb|AJ251502.1|DME251502 Drosophila melanogaster mRNA for acGAP protein (acGAP gene) Length = 2317 Score = 40.1 bits (20), Expect = 9.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 452 gtgcagaaaggccagcttgt 471 |||||||||||||||||||| Sbjct: 527 gtgcagaaaggccagcttgt 508 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,770,701 Number of Sequences: 3902068 Number of extensions: 5770701 Number of successful extensions: 109579 Number of sequences better than 10.0: 56 Number of HSP's better than 10.0 without gapping: 56 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 109444 Number of HSP's gapped (non-prelim): 125 length of query: 707 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 684 effective length of database: 17,143,297,704 effective search space: 11726015629536 effective search space used: 11726015629536 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)