Clone Information

BLAST Search Result

Clone Name	rbaal13k18
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	192	7e-46
2	dbj\|AP006438.3\| Oryza sativa (japonica cultivar-group) genomic D...	192	7e-46
3	dbj\|AP004881.2\| Oryza sativa (japonica cultivar-group) genomic D...	192	7e-46
4	dbj\|AK121308.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	192	7e-46
5	gb\|AY110825.1\| Zea mays CL16923_1 mRNA sequence	149	1e-32
6	gb\|AC138232.10\| Mus musculus chromosome 1, clone RP23-39C19, com...	46	0.11
7	gb\|AC107783.10\| Mus musculus chromosome 1, clone RP23-38G5, comp...	46	0.11
8	gb\|BT014434.1\| Lycopersicon esculentum clone 133755F, mRNA sequence	44	0.42
9	gb\|AC183833.2\| Pan troglodytes BAC clone CH251-141C5 from chromo...	44	0.42
10	gb\|AC099398.5\| Homo sapiens BAC clone RP11-731K22 from 7, comple...	44	0.42
11	emb\|AJ307325.1\|HIM307325 Human immunodeficiency virus type 1 vir...	44	0.42
12	emb\|Z46655.1\|LEMMI10 Lycopersicon esculentum Marmande	44	0.42
13	gb\|BC075233.1\| Xenopus laevis MGC84425 protein, mRNA (cDNA clone...	42	1.7
14	gb\|CP000076.1\| Pseudomonas fluorescens Pf-5, complete genome	42	1.7
15	gb\|CP000248.1\| Novosphingobium aromaticivorans DSM 12444, comple...	42	1.7
16	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.7
17	dbj\|BA000040.2\| Bradyrhizobium japonicum USDA 110 DNA, complete ...	42	1.7
18	dbj\|AP003278.5\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.7
19	dbj\|AP003504.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.7
20	dbj\|AK102895.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	42	1.7
21	dbj\|AK067562.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	42	1.7
22	gb\|AC114608.5\| Mus musculus chromosome 8, clone RP23-418L5, comp...	40	6.6
23	ref\|XM_362883.1\| Magnaporthe grisea 70-15 hypothetical protein (...	40	6.6
24	ref\|XM_419261.1\| PREDICTED: Gallus gallus similar to hypothetica...	40	6.6
25	ref\|XM_323365.1\| Neurospora crassa OR74A predicted protein (NCU0...	40	6.6
26	ref\|XM_952569.1\| Neurospora crassa OR74A hypothetical protein (N...	40	6.6
27	gb\|BC003793.1\| Mus musculus phosphotriesterase related, mRNA (cD...	40	6.6
28	gb\|AC124475.3\| Mus musculus BAC clone RP24-92F8 from chromosome ...	40	6.6
29	emb\|BX571772.8\| Zebrafish DNA sequence from clone CH211-238E12 i...	40	6.6
30	gb\|AC121583.3\| Mus musculus BAC clone RP23-259K16 from 13, compl...	40	6.6
31	emb\|AL589740.4\| Human DNA sequence from clone RP11-436D23 on chr...	40	6.6
32	emb\|AL157827.17\| Human DNA sequence from clone RP11-19J3 on chro...	40	6.6
33	emb\|BX897678.1\| Neurospora crassa DNA linkage group VI BAC clone...	40	6.6
34	gb\|BC040480.1\| Homo sapiens enoyl Coenzyme A hydratase domain co...	40	6.6
35	gb\|AC099677.2\| Homo sapiens chromosome 1 clone RP4-631H13, compl...	40	6.6
36	gb\|AC012014.20\| Homo sapiens 3 BAC RP11-255N4 (Roswell Park Canc...	40	6.6
37	gb\|AC104837.2\| Homo sapiens chromosome 1 clone RP4-641G12, compl...	40	6.6
38	ref\|NM_008961.2\| Mus musculus phosphotriesterase related (Pter),...	40	6.6
39	ref\|XM_682958.1\| PREDICTED: Danio rerio similar to voltage-gated...	40	6.6
40	ref\|XM_678505.1\| PREDICTED: Danio rerio similar to voltage-gated...	40	6.6
41	gb\|AE010299.1\| Methanosarcina acetivorans str. C2A, complete genome	40	6.6
42	dbj\|AK075604.1\| Mus musculus adult male kidney cDNA, RIKEN full-...	40	6.6
43	gb\|AC008164.3\| Homo sapiens BAC clone RP11-65N17 from 2, complet...	40	6.6
44	emb\|BX648522.1\|HSM808670 Homo sapiens mRNA; cDNA DKFZp686F0985 (...	40	6.6
45	emb\|AL590764.3\|HS1091N2 Homo sapiens chromosome X from PAC 1091N...	40	6.6
46	emb\|AL929209.17\| Mouse DNA sequence from clone RP23-415C3 on chr...	40	6.6
47	gb\|AC123862.5\| Mus musculus BAC clone RP23-356A24 from 16, compl...	40	6.6
48	gb\|U28016.1\|MMU28016 Mus musculus parathion hydrolase (phosphotr...	40	6.6
49	emb\|AL831735.10\| Mouse DNA sequence from clone RP23-452D3 on chr...	40	6.6
50	gb\|BC038389.1\| Homo sapiens enoyl Coenzyme A hydratase domain co...	40	6.6
51	emb\|AL590762.1\|HSXDPA Homo sapiens chromosome X sequence from 6...	40	6.6
52	dbj\|AB045983.1\| Mus musculus gene for gliacolin, complete cds	40	6.6

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  192 bits (97), Expect = 7e-46
 Identities = 118/125 (94%)
 Strand = Plus / Minus

                                                                            
Query: 312      ccttgcagatggggcagacgaccttgaggccgacggcgcgggcctcgagctgggacccct 371
                |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 23910585 ccttgcagatggggcagatgaccttgaggccgacggcgcgggcctcgagctgggacccct 23910526

                                                                            
Query: 372      tggacttctggttcttctccgcgctcttccgctgcgcgtcgatcttctgctttccccgcg 431
                | ||||||||||||||||||||| ||  ||||||||| |||||||||||||| |||||||
Sbjct: 23910525 tcgacttctggttcttctccgcgttccgccgctgcgcatcgatcttctgcttcccccgcg 23910466

                     
Query: 432      tcatc 436
                |||||
Sbjct: 23910465 tcatc 23910461



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 56/62 (90%)
 Strand = Plus / Minus

                                                                            
Query: 248      ggtttctccctggggtgctttgatccatagtgatcaatcaattgcttctcgttggctagt 307
                ||||| ||| |||| ||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct: 23912022 ggtttttccttgggatgctttgatccatagtgatcaatcaattgtttctcattggccagt 23911963

                  
Query: 308      tg 309
                ||
Sbjct: 23911962 tg 23911961



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                   
Query: 91       ggctcttgcctggaacaagaggaaatgcatacatt 125
                |||||| ||| | ||||||||||||||||||||||
Sbjct: 23912177 ggctctagccagaaacaagaggaaatgcatacatt 23912143

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>dbj|AP006438.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0030C08
          Length = 163423

 Score =  192 bits (97), Expect = 7e-46
 Identities = 118/125 (94%)
 Strand = Plus / Minus

                                                                          
Query: 312    ccttgcagatggggcagacgaccttgaggccgacggcgcgggcctcgagctgggacccct 371
              |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 132251 ccttgcagatggggcagatgaccttgaggccgacggcgcgggcctcgagctgggacccct 132192

                                                                          
Query: 372    tggacttctggttcttctccgcgctcttccgctgcgcgtcgatcttctgctttccccgcg 431
              | ||||||||||||||||||||| ||  ||||||||| |||||||||||||| |||||||
Sbjct: 132191 tcgacttctggttcttctccgcgttccgccgctgcgcatcgatcttctgcttcccccgcg 132132

                   
Query: 432    tcatc 436
              |||||
Sbjct: 132131 tcatc 132127



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 56/62 (90%)
 Strand = Plus / Minus

                                                                          
Query: 248    ggtttctccctggggtgctttgatccatagtgatcaatcaattgcttctcgttggctagt 307
              ||||| ||| |||| ||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct: 133688 ggtttttccttgggatgctttgatccatagtgatcaatcaattgtttctcattggccagt 133629

                
Query: 308    tg 309
              ||
Sbjct: 133628 tg 133627



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                 
Query: 91     ggctcttgcctggaacaagaggaaatgcatacatt 125
              |||||| ||| | ||||||||||||||||||||||
Sbjct: 133843 ggctctagccagaaacaagaggaaatgcatacatt 133809

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>dbj|AP004881.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0496E03
          Length = 138622

 Score =  192 bits (97), Expect = 7e-46
 Identities = 118/125 (94%)
 Strand = Plus / Minus

                                                                         
Query: 312   ccttgcagatggggcagacgaccttgaggccgacggcgcgggcctcgagctgggacccct 371
             |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 44549 ccttgcagatggggcagatgaccttgaggccgacggcgcgggcctcgagctgggacccct 44490

                                                                         
Query: 372   tggacttctggttcttctccgcgctcttccgctgcgcgtcgatcttctgctttccccgcg 431
             | ||||||||||||||||||||| ||  ||||||||| |||||||||||||| |||||||
Sbjct: 44489 tcgacttctggttcttctccgcgttccgccgctgcgcatcgatcttctgcttcccccgcg 44430

                  
Query: 432   tcatc 436
             |||||
Sbjct: 44429 tcatc 44425



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 56/62 (90%)
 Strand = Plus / Minus

                                                                         
Query: 248   ggtttctccctggggtgctttgatccatagtgatcaatcaattgcttctcgttggctagt 307
             ||||| ||| |||| ||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct: 45986 ggtttttccttgggatgctttgatccatagtgatcaatcaattgtttctcattggccagt 45927

               
Query: 308   tg 309
             ||
Sbjct: 45926 tg 45925



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                
Query: 91    ggctcttgcctggaacaagaggaaatgcatacatt 125
             |||||| ||| | ||||||||||||||||||||||
Sbjct: 46141 ggctctagccagaaacaagaggaaatgcatacatt 46107

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>dbj|AK121308.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023112A22, full
           insert sequence
          Length = 1947

 Score =  192 bits (97), Expect = 7e-46
 Identities = 118/125 (94%)
 Strand = Plus / Minus

                                                                       
Query: 312 ccttgcagatggggcagacgaccttgaggccgacggcgcgggcctcgagctgggacccct 371
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 ccttgcagatggggcagatgaccttgaggccgacggcgcgggcctcgagctgggacccct 158

                                                                       
Query: 372 tggacttctggttcttctccgcgctcttccgctgcgcgtcgatcttctgctttccccgcg 431
           | ||||||||||||||||||||| ||  ||||||||| |||||||||||||| |||||||
Sbjct: 157 tcgacttctggttcttctccgcgttccgccgctgcgcatcgatcttctgcttcccccgcg 98

                
Query: 432 tcatc 436
           |||||
Sbjct: 97  tcatc 93



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 56/62 (90%)
 Strand = Plus / Minus

                                                                        
Query: 248  ggtttctccctggggtgctttgatccatagtgatcaatcaattgcttctcgttggctagt 307
            ||||| ||| |||| ||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct: 1654 ggtttttccttgggatgctttgatccatagtgatcaatcaattgtttctcattggccagt 1595

              
Query: 308  tg 309
            ||
Sbjct: 1594 tg 1593



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 91   ggctcttgcctggaacaagaggaaatgcatacatt 125
            |||||| ||| | ||||||||||||||||||||||
Sbjct: 1809 ggctctagccagaaacaagaggaaatgcatacatt 1775

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>gb|AY110825.1| Zea mays CL16923_1 mRNA sequence
          Length = 772

 Score =  149 bits (75), Expect = 1e-32
 Identities = 114/127 (89%)
 Strand = Plus / Minus

                                                                       
Query: 312 ccttgcagatggggcagacgaccttgaggccgacggcgcgggcctcgagctgggacccct 371
           |||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 235 ccttgcagatggagcagacgatcttgaggccgacggcgcgggcctcgagctgagacccct 176

                                                                       
Query: 372 tggacttctggttcttctccgcgctcttccgctgcgcgtcgatcttctgctttccccgcg 431
           |||| ||||||||   ||||||| |   |||||||||||||||||||||||| || ||||
Sbjct: 175 tggatttctggtttcgctccgcgttacgccgctgcgcgtcgatcttctgcttcccgcgcg 116

                  
Query: 432 tcatccc 438
           |||||||
Sbjct: 115 tcatccc 109



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 245 ggaggtttctccctggggtgctttgatccatagtgatc 282
           |||||||||||| | || ||||||||||||||||||||
Sbjct: 302 ggaggtttctcctttggatgctttgatccatagtgatc 265

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>gb|AC138232.10| Mus musculus chromosome 1, clone RP23-39C19, complete sequence
          Length = 199733

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                            
Query: 454   ctccttctcttctgcctccgactcctcctcc 484
             ||||||||||||| ||||| |||||||||||
Sbjct: 14176 ctccttctcttcttcctcctactcctcctcc 14146

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>gb|AC107783.10| Mus musculus chromosome 1, clone RP23-38G5, complete sequence
          Length = 178062

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                             
Query: 454    ctccttctcttctgcctccgactcctcctcc 484
              ||||||||||||| ||||| |||||||||||
Sbjct: 159317 ctccttctcttcttcctcctactcctcctcc 159287

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>gb|BT014434.1| Lycopersicon esculentum clone 133755F, mRNA sequence
          Length = 1089

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 455 tccttctcttctgcctccgactcctc 480
           |||||||||||| |||||||||||||
Sbjct: 971 tccttctcttcttcctccgactcctc 946

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>gb|AC183833.2| Pan troglodytes BAC clone CH251-141C5 from chromosome 7, complete
              sequence
          Length = 155911

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 243    ctggaggtttctccctggggtg 264
              ||||||||||||||||||||||
Sbjct: 130350 ctggaggtttctccctggggtg 130371

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>gb|AC099398.5| Homo sapiens BAC clone RP11-731K22 from 7, complete sequence
          Length = 86311

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 243   ctggaggtttctccctggggtg 264
             ||||||||||||||||||||||
Sbjct: 24286 ctggaggtttctccctggggtg 24307

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>emb|AJ307325.1|HIM307325 Human immunodeficiency virus type 1 viral partial pro gene for
           protease, patient 29-0
          Length = 297

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 45  gacagtttgacaagatactcatagaa 70
           |||||| |||||||||||||||||||
Sbjct: 170 gacagtatgacaagatactcatagaa 195

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>emb|Z46655.1|LEMMI10 Lycopersicon esculentum Marmande
          Length = 336

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 455 tccttctcttctgcctccgactcctc 480
           |||||||||||| |||||||||||||
Sbjct: 116 tccttctcttcttcctccgactcctc 91

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>gb|BC075233.1| Xenopus laevis MGC84425 protein, mRNA (cDNA clone MGC:84425
            IMAGE:7019446), complete cds
          Length = 1320

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 218  atcagttactctgcatttgat 238
            |||||||||||||||||||||
Sbjct: 1160 atcagttactctgcatttgat 1180

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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 328     gacgaccttgaggccgacggc 348
               |||||||||||||||||||||
Sbjct: 1414993 gacgaccttgaggccgacggc 1415013

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>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 329    acgaccttgaggccgacggcg 349
              |||||||||||||||||||||
Sbjct: 203753 acgaccttgaggccgacggcg 203733

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 378      tctggttcttctccgcgctct 398
                |||||||||||||||||||||
Sbjct: 23573687 tctggttcttctccgcgctct 23573707

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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 339     ggccgacggcgcgggcctcgagctg 363
               ||||| |||||||||||||||||||
Sbjct: 5404753 ggccggcggcgcgggcctcgagctg 5404777

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>dbj|AP003278.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0518F01
          Length = 154541

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 378   tctggttcttctccgcgctct 398
             |||||||||||||||||||||
Sbjct: 36386 tctggttcttctccgcgctct 36406

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>dbj|AP003504.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0025A05
          Length = 154298

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 378    tctggttcttctccgcgctct 398
              |||||||||||||||||||||
Sbjct: 136992 tctggttcttctccgcgctct 137012

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>dbj|AK102895.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033112N23, full
           insert sequence
          Length = 2100

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 378 tctggttcttctccgcgctct 398
           |||||||||||||||||||||
Sbjct: 341 tctggttcttctccgcgctct 361

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>dbj|AK067562.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013112G07, full
           insert sequence
          Length = 2074

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 378 tctggttcttctccgcgctct 398
           |||||||||||||||||||||
Sbjct: 340 tctggttcttctccgcgctct 360

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>gb|AC114608.5| Mus musculus chromosome 8, clone RP23-418L5, complete sequence
          Length = 190200

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 166   gcagactgagcagcctcagaaaca 189
             |||| |||||||||||||||||||
Sbjct: 94122 gcagtctgagcagcctcagaaaca 94145

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>ref|XM_362883.1| Magnaporthe grisea 70-15 hypothetical protein (MG08554.4) partial
           cds
          Length = 1692

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 325 gcagacgaccttgaggccgacggcgcgg 352
           |||||||||||||| ||||||| |||||
Sbjct: 969 gcagacgaccttgatgccgacgacgcgg 942

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>ref|XM_419261.1| PREDICTED: Gallus gallus similar to hypothetical protein
           (LOC421181), mRNA
          Length = 1716

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 385 cttctccgcgctcttccgctgcgc 408
           |||||||||||||| |||||||||
Sbjct: 99  cttctccgcgctctgccgctgcgc 122

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>ref|XM_323365.1| Neurospora crassa OR74A predicted protein (NCU04047.1) partial mRNA
          Length = 1416

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 460 ctcttctgcctccgactcctcctccgat 487
           ||||||| ||||||||||||| ||||||
Sbjct: 801 ctcttcttcctccgactcctcttccgat 828

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>ref|XM_952569.1| Neurospora crassa OR74A hypothetical protein (NCU04047.1) partial
           mRNA
          Length = 1416

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 460 ctcttctgcctccgactcctcctccgat 487
           ||||||| ||||||||||||| ||||||
Sbjct: 801 ctcttcttcctccgactcctcttccgat 828

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>gb|BC003793.1| Mus musculus phosphotriesterase related, mRNA (cDNA clone MGC:6034
            IMAGE:3601675), complete cds
          Length = 1707

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 51   ttgacaagatactcatagaa 70
            ||||||||||||||||||||
Sbjct: 1093 ttgacaagatactcatagaa 1112

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>gb|AC124475.3| Mus musculus BAC clone RP24-92F8 from chromosome 8, complete sequence
          Length = 212858

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 166    gcagactgagcagcctcagaaaca 189
              |||| |||||||||||||||||||
Sbjct: 196030 gcagtctgagcagcctcagaaaca 196007

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>emb|BX571772.8| Zebrafish DNA sequence from clone CH211-238E12 in linkage group 5,
            complete sequence
          Length = 125812

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 96   ttgcctggaacaagaggaaatgca 119
            |||||||| |||||||||||||||
Sbjct: 5352 ttgcctggtacaagaggaaatgca 5375

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>gb|AC121583.3| Mus musculus BAC clone RP23-259K16 from 13, complete sequence
          Length = 207129

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 460   ctcttctgcctccgactcctcctc 483
             ||||||||||||| ||||||||||
Sbjct: 86073 ctcttctgcctcctactcctcctc 86050

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>emb|AL589740.4| Human DNA sequence from clone RP11-436D23 on chromosome 6 Contains
            part of a novel gene, complete sequence
          Length = 187863

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 67   agaaggcaaatacatgctca 86
            ||||||||||||||||||||
Sbjct: 2744 agaaggcaaatacatgctca 2763

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>emb|AL157827.17| Human DNA sequence from clone RP11-19J3 on chromosome 9q21.33-22.31
              Contains the 5' end of the ASPN gene for asporin (LRR class
              1), the ECM2 gene for female organ and adipocyte specific
              extracellular matrix protein 2, a pseudogene similar to
              part of cytochrome c oxidase I (MTCO1), the 3' end of a
              novel gene, the 3' end of the C9orf12 gene and a CpG
              island, complete sequence
          Length = 167734

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 443    cccctccttcactccttctc 462
              ||||||||||||||||||||
Sbjct: 118498 cccctccttcactccttctc 118479

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>emb|BX897678.1| Neurospora crassa DNA linkage group VI BAC clone B10H18
          Length = 74165

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 460   ctcttctgcctccgactcctcctccgat 487
             ||||||| ||||||||||||| ||||||
Sbjct: 62298 ctcttcttcctccgactcctcttccgat 62325

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>gb|BC040480.1| Homo sapiens enoyl Coenzyme A hydratase domain containing 2, mRNA
           (cDNA clone MGC:33011 IMAGE:5272399), complete cds
          Length = 4280

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 446 ctccttcactccttctcttctgcc 469
           |||||||||| |||||||||||||
Sbjct: 402 ctccttcactgcttctcttctgcc 379

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>gb|AC099677.2| Homo sapiens chromosome 1 clone RP4-631H13, complete sequence
          Length = 116236

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 446   ctccttcactccttctcttctgcc 469
             |||||||||| |||||||||||||
Sbjct: 74766 ctccttcactgcttctcttctgcc 74789

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>gb|AC012014.20| Homo sapiens 3 BAC RP11-255N4 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 199523

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 453  actccttctcttctgcctcc 472
            ||||||||||||||||||||
Sbjct: 5539 actccttctcttctgcctcc 5558

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>gb|AC104837.2| Homo sapiens chromosome 1 clone RP4-641G12, complete sequence
          Length = 151265

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 446   ctccttcactccttctcttc 465
             ||||||||||||||||||||
Sbjct: 40636 ctccttcactccttctcttc 40617

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>ref|NM_008961.2| Mus musculus phosphotriesterase related (Pter), mRNA
          Length = 3620

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 51   ttgacaagatactcatagaa 70
            ||||||||||||||||||||
Sbjct: 1185 ttgacaagatactcatagaa 1204

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>ref|XM_682958.1| PREDICTED: Danio rerio similar to voltage-gated calcium channel
            subunit Cav2.2 variant I (LOC559600), mRNA
          Length = 2004

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 96   ttgcctggaacaagaggaaatgca 119
            |||||||| |||||||||||||||
Sbjct: 1220 ttgcctggtacaagaggaaatgca 1243

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>ref|XM_678505.1| PREDICTED: Danio rerio similar to voltage-gated calcium channel
           subunit Cav2.2 variant I (LOC555860), partial mRNA
          Length = 1167

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 96  ttgcctggaacaagaggaaatgca 119
           |||||||| |||||||||||||||
Sbjct: 272 ttgcctggtacaagaggaaatgca 295

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>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome
          Length = 5751492

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 311     gccttgcagatggggcagac 330
               ||||||||||||||||||||
Sbjct: 1991279 gccttgcagatggggcagac 1991260

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>dbj|AK075604.1| Mus musculus adult male kidney cDNA, RIKEN full-length enriched
            library, clone:0610042L23 product:phosphotriesterase
            related, full insert sequence
          Length = 3557

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 51   ttgacaagatactcatagaa 70
            ||||||||||||||||||||
Sbjct: 1123 ttgacaagatactcatagaa 1142

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>gb|AC008164.3| Homo sapiens BAC clone RP11-65N17 from 2, complete sequence
          Length = 151829

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 453   actccttctcttctgcctcc 472
             ||||||||||||||||||||
Sbjct: 76616 actccttctcttctgcctcc 76635

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>emb|BX648522.1|HSM808670 Homo sapiens mRNA; cDNA DKFZp686F0985 (from clone DKFZp686F0985)
          Length = 2169

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 446 ctccttcactccttctcttctgcc 469
           |||||||||| |||||||||||||
Sbjct: 961 ctccttcactgcttctcttctgcc 938

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>emb|AL590764.3|HS1091N2 Homo sapiens chromosome X from PAC 1091N2, region GJB1-DXS559 map Xq13.1,
              complete sequence
          Length = 201197

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 445    cctccttcactccttctcttctgc 468
              |||| |||||||||||||||||||
Sbjct: 179898 cctctttcactccttctcttctgc 179921

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>emb|AL929209.17| Mouse DNA sequence from clone RP23-415C3 on chromosome 2, complete
             sequence
          Length = 210790

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 51    ttgacaagatactcatagaa 70
             ||||||||||||||||||||
Sbjct: 25867 ttgacaagatactcatagaa 25886

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>gb|AC123862.5| Mus musculus BAC clone RP23-356A24 from 16, complete sequence
          Length = 223030

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 446    ctccttcactccttctcttc 465
              ||||||||||||||||||||
Sbjct: 107574 ctccttcactccttctcttc 107555

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>gb|U28016.1|MMU28016 Mus musculus parathion hydrolase (phosphotriesterase)-related protein
            mRNA, complete cds
          Length = 1697

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 51   ttgacaagatactcatagaa 70
            ||||||||||||||||||||
Sbjct: 1102 ttgacaagatactcatagaa 1121

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>emb|AL831735.10| Mouse DNA sequence from clone RP23-452D3 on chromosome 2, complete
              sequence
          Length = 193718

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 168    agactgagcagcctcagaaa 187
              ||||||||||||||||||||
Sbjct: 176776 agactgagcagcctcagaaa 176757

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>gb|BC038389.1| Homo sapiens enoyl Coenzyme A hydratase domain containing 2, mRNA
           (cDNA clone IMAGE:4753967)
          Length = 1660

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 446 ctccttcactccttctcttctgcc 469
           |||||||||| |||||||||||||
Sbjct: 401 ctccttcactgcttctcttctgcc 378

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>emb|AL590762.1|HSXDPA Homo sapiens chromosome X  sequence from 6 PACs 1 BAC and 1 cosmid,
             region GJB1-DXS559 map Xq13.1; segment 1/2, complete
             sequence
          Length = 305000

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 445   cctccttcactccttctcttctgc 468
             |||| |||||||||||||||||||
Sbjct: 15708 cctctttcactccttctcttctgc 15731

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>dbj|AB045983.1| Mus musculus gene for gliacolin, complete cds
          Length = 11031

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 51    ttgacaagatactcatagaa 70
             ||||||||||||||||||||
Sbjct: 10532 ttgacaagatactcatagaa 10513


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,043,618
Number of Sequences: 3902068
Number of extensions: 4043618
Number of successful extensions: 129710
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 129415
Number of HSP's gapped (non-prelim): 294
length of query: 490
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 468
effective length of database: 17,147,199,772
effective search space: 8024889493296
effective search space used: 8024889493296
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result