>ref|XM_476044.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 894

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                     
Query: 441 cccttcttgtcacctgttttctggcctgatggtgttgcaattttggccttcttgtcag 498
           ||||||||||||||||| ||||||||||| ||||| ||||| || || ||||| ||||
Sbjct: 713 cccttcttgtcacctgtcttctggcctgacggtgtagcaatctttgctttcttatcag 656

>gb|AF255711.1|AF255711 Oryza sativa putative histone deacetylase HD2 mRNA, complete cds
          Length = 894

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                     
Query: 441 cccttcttgtcacctgttttctggcctgatggtgttgcaattttggccttcttgtcag 498
           ||||||||||||||||| ||||||||||| ||||| ||||| || || ||||| ||||
Sbjct: 713 cccttcttgtcacctgtcttctggcctgacggtgtagcaatctttgctttcttatcag 656

>dbj|AK072845.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023142J09, full
           insert sequence
          Length = 1284

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                     
Query: 441 cccttcttgtcacctgttttctggcctgatggtgttgcaattttggccttcttgtcag 498
           ||||||||||||||||| ||||||||||| ||||| ||||| || || ||||| ||||
Sbjct: 797 cccttcttgtcacctgtcttctggcctgacggtgtagcaatctttgctttcttatcag 740

>dbj|AK063535.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-117-B10, full
           insert sequence
          Length = 1161

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                     
Query: 441 cccttcttgtcacctgttttctggcctgatggtgttgcaattttggccttcttgtcag 498
           ||||||||||||||||| ||||||||||| ||||| ||||| || || ||||| ||||
Sbjct: 798 cccttcttgtcacctgtcttctggcctgacggtgtagcaatctttgctttcttatcag 741

>gb|AC004006.1| Homo sapiens PAC clone RP4-740B21 from 7, complete sequence
          Length = 119453

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 439    cccccttcttgtcacctgttttct 462
              ||||||||||||||||||||||||
Sbjct: 106915 cccccttcttgtcacctgttttct 106892

>emb|AJ234619.1|HVU234619 Hordeum vulgare genomic DNA fragment; clone MWG0884.rev
          Length = 490

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                           
Query: 451 cacctgttttctggcctgatggtgttgcaattttggccttcttgtcag 498
           ||||||| | |||||| ||||||||| |||| || |||||||||||||
Sbjct: 247 cacctgtgtcctggccagatggtgtttcaatcttagccttcttgtcag 294

>gb|AC133005.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0052C16, complete sequence
          Length = 137872

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 188   gggcaagaacacatcaatcaaaata 212
             ||||||||||||||||||| |||||
Sbjct: 67495 gggcaagaacacatcaatctaaata 67471

>gb|AC121499.9| Mus musculus chromosome 9, clone RP23-269E5, complete sequence
          Length = 212061

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 224   aacccagccagccaaccaaca 244
             |||||||||||||||||||||
Sbjct: 80204 aacccagccagccaaccaaca 80224

>gb|AC137108.12| Mus musculus chromosome 9, clone RP23-277J20, complete sequence
          Length = 204108

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 223    caacccagccagccaaccaac 243
              |||||||||||||||||||||
Sbjct: 128872 caacccagccagccaaccaac 128852

>emb|AL355587.14| Human DNA sequence from clone RP11-561H23 on chromosome 10 Contains the
              3' end of a novel gene (KIAA1136) (FLJ37801) and a CpG
              island, complete sequence
          Length = 130039

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 459    ttctggcctgatggtgttgca 479
              |||||||||||||||||||||
Sbjct: 129130 ttctggcctgatggtgttgca 129110

>gb|AC018509.6| Homo sapiens chromosome 10 clone RP11-307B23, complete sequence
          Length = 162877

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 459    ttctggcctgatggtgttgca 479
              |||||||||||||||||||||
Sbjct: 161781 ttctggcctgatggtgttgca 161801

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 188     gggcaagaacacatcaatcaaaata 212
               ||||||||||||||||||| |||||
Sbjct: 6396101 gggcaagaacacatcaatctaaata 6396077

>gb|AC007218.6| Homo sapiens chromosome 16 clone RP11-297M9, complete sequence
          Length = 193220

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 401    taccttcttggccgggtgcgg 421
              |||||||||||||||||||||
Sbjct: 181556 taccttcttggccgggtgcgg 181576

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 188     gggcaagaacacatcaatcaaaata 212
               ||||||||||||||||||| |||||
Sbjct: 6462568 gggcaagaacacatcaatctaaata 6462544

>gb|AC102714.16| Mus musculus chromosome 5, clone RP24-298D13, complete sequence
          Length = 165774

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 224    aacccagccagccaaccaac 243
              ||||||||||||||||||||
Sbjct: 119896 aacccagccagccaaccaac 119915

>emb|AL449283.13| Human DNA sequence from clone RP11-386I23 on chromosome 1 Contains a
             GAJ protein pseudogene, complete sequence
          Length = 52920

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 488   cttcttgtcagcaacagggg 507
             ||||||||||||||||||||
Sbjct: 41117 cttcttgtcagcaacagggg 41136

>emb|AL022310.1|HS395P12 Human DNA sequence from clone RP3-395P12 on chromosome 1q24-25 Contains
             a glutamic-oxaloacetic transaminase 2, mitochondrial
             (aspartate aminotransferase 2)(GOT2) pseudogene, a novel
             gene and the TNFSF4 gene for tumor necrosis factor
             (ligand) superfamily, member 4 (tax-transcriptionally
             activated glycoprotein 1, 34kDa), complete sequence
          Length = 147724

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 96    tcccttccctcaggctcagg 115
             ||||||||||||||||||||
Sbjct: 53007 tcccttccctcaggctcagg 53026

>gb|AC091304.15| Homo sapiens chromosome 15, clone RP11-483E23, complete sequence
          Length = 179218

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 402    accttcttggccgggtgcgg 421
              ||||||||||||||||||||
Sbjct: 132729 accttcttggccgggtgcgg 132710

>dbj|AK127194.1| Homo sapiens cDNA FLJ45259 fis, clone BRHIP2020695
          Length = 3056

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 476  tgcaattttggccttcttgt 495
            ||||||||||||||||||||
Sbjct: 2265 tgcaattttggccttcttgt 2246

>gb|AC158782.5| Mus musculus chromosome 5, clone RP23-134H19, complete sequence
          Length = 228458

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 224    aacccagccagccaaccaac 243
              ||||||||||||||||||||
Sbjct: 219039 aacccagccagccaaccaac 219058

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 191      caagaacacatcaatcaaaa 210
                ||||||||||||||||||||
Sbjct: 38831836 caagaacacatcaatcaaaa 38831855

>dbj|AP003407.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1078G07
          Length = 199457

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 191    caagaacacatcaatcaaaa 210
              ||||||||||||||||||||
Sbjct: 104718 caagaacacatcaatcaaaa 104737

>gb|AC073834.6| Homo sapiens BAC clone RP11-250N10 from 2, complete sequence
          Length = 172415

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 476    tgcaattttggccttcttgt 495
              ||||||||||||||||||||
Sbjct: 117138 tgcaattttggccttcttgt 117157

>gb|AC132956.4| Mus musculus BAC clone RP23-106K20 from chromosome 7, complete sequence
          Length = 195204

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 165    ccagcgtaactgatagtctc 184
              ||||||||||||||||||||
Sbjct: 159773 ccagcgtaactgatagtctc 159792

>gb|AF254072.1|AF254072 Zea mays histone deacetylase 2 isoform b mRNA, complete cds
          Length = 912

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 441 cccttcttgtcacctgttttctgg 464
           ||||||||| ||||||||||||||
Sbjct: 734 cccttcttgccacctgttttctgg 711

>gb|AC116892.10| Mus musculus chromosome 8, clone RP24-529J16, complete sequence
          Length = 176340

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 135   acatagataatagataggta 154
             ||||||||||||||||||||
Sbjct: 35152 acatagataatagataggta 35133

>gb|AC145294.4| Mus musculus BAC clone RP23-88B16 from 7, complete sequence
          Length = 217265

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 165   ccagcgtaactgatagtctc 184
             ||||||||||||||||||||
Sbjct: 89435 ccagcgtaactgatagtctc 89454

>gb|AY104912.1| Zea mays PCO120143 mRNA sequence
          Length = 1305

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 441 cccttcttgtcacctgttttctgg 464
           ||||||||| ||||||||||||||
Sbjct: 823 cccttcttgccacctgttttctgg 800

>emb|CR628386.8| Zebrafish DNA sequence from clone CH211-241O7 in linkage group 10,
              complete sequence
          Length = 148044

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 222    tcaacccagccagccaacca 241
              ||||||||||||||||||||
Sbjct: 140787 tcaacccagccagccaacca 140768

>gb|AC149596.2| Mus musculus BAC clone RP24-424J20 from 7, complete sequence
          Length = 187362

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 165    ccagcgtaactgatagtctc 184
              ||||||||||||||||||||
Sbjct: 130306 ccagcgtaactgatagtctc 130287


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,806,905
Number of Sequences: 3902068
Number of extensions: 3806905
Number of successful extensions: 94062
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 93912
Number of HSP's gapped (non-prelim): 150
length of query: 522
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 499
effective length of database: 17,143,297,704
effective search space: 8554505554296
effective search space used: 8554505554296
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)