| Clone Name | rbaal13k09 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC140279.4| Mus musculus BAC clone RP23-338N10 from chromosome 16, complete sequence Length = 211002 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Minus Query: 200 ttgacctggttgcaacatggcc 221 |||||||||||||||||||||| Sbjct: 49118 ttgacctggttgcaacatggcc 49097
>gb|AC117256.4| Mus musculus BAC clone RP24-483G23 from chromosome 16, complete sequence Length = 167118 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Plus Query: 200 ttgacctggttgcaacatggcc 221 |||||||||||||||||||||| Sbjct: 43631 ttgacctggttgcaacatggcc 43652
>gb|AC145744.3| Mus musculus BAC clone RP24-142P6 from 16, complete sequence Length = 207240 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Plus Query: 200 ttgacctggttgcaacatggcc 221 |||||||||||||||||||||| Sbjct: 56968 ttgacctggttgcaacatggcc 56989
>ref|XM_515031.1| PREDICTED: Pan troglodytes similar to sushi domain containing 2; Sushi domain (SCR repeat) containing (LOC458710), mRNA Length = 2454 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 13 acaatggctacagcctggacggggcagag 41 |||| ||||||||||||| |||||||||| Sbjct: 2261 acaacggctacagcctggccggggcagag 2289
>gb|BC033107.1| Homo sapiens sushi domain containing 2, mRNA (cDNA clone MGC:45695 IMAGE:5457186), complete cds Length = 3201 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 13 acaatggctacagcctggacggggcagag 41 |||| ||||||||||||| |||||||||| Sbjct: 2299 acaacggctacagcctggccggggcagag 2327
>ref|NM_019601.3| Homo sapiens sushi domain containing 2 (SUSD2), mRNA Length = 3201 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 13 acaatggctacagcctggacggggcagag 41 |||| ||||||||||||| |||||||||| Sbjct: 2299 acaacggctacagcctggccggggcagag 2327
>emb|Z92546.2|HS65A6 Human DNA sequence from clone CTA-65A6 on chromosome 22q11-12 Contains the 3' part of the gene for the ortholog of rat CAIN (KIAA0330), the gene for a novel Sushi domain (SCR repeat) containing protein similar to Mucins, ESTs, an STS, GSSs and two putative CpG islands, complete sequence Length = 73511 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 13 acaatggctacagcctggacggggcagag 41 |||| ||||||||||||| |||||||||| Sbjct: 18856 acaacggctacagcctggccggggcagag 18828
>dbj|AK126105.1| Homo sapiens cDNA FLJ44117 fis, clone TESTI4046903 Length = 4938 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 13 acaatggctacagcctggacggggcagag 41 |||| ||||||||||||| |||||||||| Sbjct: 4054 acaacggctacagcctggccggggcagag 4082
>gb|AC093572.18| Pan troglodytes clone rp43-25g23, complete sequence Length = 195652 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 13 acaatggctacagcctggacggggcagag 41 |||| ||||||||||||| |||||||||| Sbjct: 127508 acaacggctacagcctggccggggcagag 127480
>dbj|AK026431.1| Homo sapiens cDNA: FLJ22778 fis, clone KAIA1714 Length = 2723 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 13 acaatggctacagcctggacggggcagag 41 |||| ||||||||||||| |||||||||| Sbjct: 2317 acaacggctacagcctggccggggcagag 2345
>dbj|AP000353.2| Homo sapiens genomic DNA, chromosome 22q11.2, IGLL region, clone:KB318B8 Length = 123828 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 13 acaatggctacagcctggacggggcagag 41 |||| ||||||||||||| |||||||||| Sbjct: 86341 acaacggctacagcctggccggggcagag 86369
>ref|XM_478986.1| Oryza sativa (japonica cultivar-group), mRNA Length = 588 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 312 ccacagggggatgaggatga 331 |||||||||||||||||||| Sbjct: 520 ccacagggggatgaggatga 539
>gb|AC163023.4| Mus musculus chromosome 3, clone RP24-247E19, complete sequence Length = 166206 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 tgaatgatcttacaacagtt 167 |||||||||||||||||||| Sbjct: 14913 tgaatgatcttacaacagtt 14894
>emb|AL391379.12| Human DNA sequence from clone RP13-171J5 on chromosome X Contains a CpG island, complete sequence Length = 116800 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 atttcaaacaatggctacag 25 |||||||||||||||||||| Sbjct: 12105 atttcaaacaatggctacag 12086
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 312 ccacagggggatgaggatga 331 |||||||||||||||||||| Sbjct: 24141111 ccacagggggatgaggatga 24141092
>dbj|AP003846.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1710_H11 Length = 136107 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 312 ccacagggggatgaggatga 331 |||||||||||||||||||| Sbjct: 74526 ccacagggggatgaggatga 74507 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,093,534 Number of Sequences: 3902068 Number of extensions: 2093534 Number of successful extensions: 36271 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 36238 Number of HSP's gapped (non-prelim): 33 length of query: 369 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 347 effective length of database: 17,147,199,772 effective search space: 5950078320884 effective search space used: 5950078320884 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)