ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal13k09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC140279.4| Mus musculus BAC clone RP23-338N10 from chromosom... 44 0.31
2gb|AC117256.4| Mus musculus BAC clone RP24-483G23 from chromosom... 44 0.31
3gb|AC145744.3| Mus musculus BAC clone RP24-142P6 from 16, comple... 44 0.31
4ref|XM_515031.1| PREDICTED: Pan troglodytes similar to sushi dom... 42 1.2
5gb|BC033107.1| Homo sapiens sushi domain containing 2, mRNA (cDN... 42 1.2
6ref|NM_019601.3| Homo sapiens sushi domain containing 2 (SUSD2),... 42 1.2
7emb|Z92546.2|HS65A6 Human DNA sequence from clone CTA-65A6 on ch... 42 1.2
8dbj|AK126105.1| Homo sapiens cDNA FLJ44117 fis, clone TESTI4046903 42 1.2
9gb|AC093572.18| Pan troglodytes clone rp43-25g23, complete sequence 42 1.2
10dbj|AK026431.1| Homo sapiens cDNA: FLJ22778 fis, clone KAIA1714 42 1.2
11dbj|AP000353.2| Homo sapiens genomic DNA, chromosome 22q11.2, IG... 42 1.2
12ref|XM_478986.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.9
13gb|AC163023.4| Mus musculus chromosome 3, clone RP24-247E19, com... 40 4.9
14emb|AL391379.12| Human DNA sequence from clone RP13-171J5 on chr... 40 4.9
15dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9
16dbj|AP003846.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.9

>gb|AC140279.4| Mus musculus BAC clone RP23-338N10 from chromosome 16, complete
             sequence
          Length = 211002

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 200   ttgacctggttgcaacatggcc 221
             ||||||||||||||||||||||
Sbjct: 49118 ttgacctggttgcaacatggcc 49097



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>gb|AC117256.4| Mus musculus BAC clone RP24-483G23 from chromosome 16, complete
             sequence
          Length = 167118

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 200   ttgacctggttgcaacatggcc 221
             ||||||||||||||||||||||
Sbjct: 43631 ttgacctggttgcaacatggcc 43652



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>gb|AC145744.3| Mus musculus BAC clone RP24-142P6 from 16, complete sequence
          Length = 207240

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 200   ttgacctggttgcaacatggcc 221
             ||||||||||||||||||||||
Sbjct: 56968 ttgacctggttgcaacatggcc 56989



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>ref|XM_515031.1| PREDICTED: Pan troglodytes similar to sushi domain containing 2;
            Sushi domain (SCR repeat) containing (LOC458710), mRNA
          Length = 2454

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 13   acaatggctacagcctggacggggcagag 41
            |||| ||||||||||||| ||||||||||
Sbjct: 2261 acaacggctacagcctggccggggcagag 2289



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>gb|BC033107.1| Homo sapiens sushi domain containing 2, mRNA (cDNA clone MGC:45695
            IMAGE:5457186), complete cds
          Length = 3201

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 13   acaatggctacagcctggacggggcagag 41
            |||| ||||||||||||| ||||||||||
Sbjct: 2299 acaacggctacagcctggccggggcagag 2327



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>ref|NM_019601.3| Homo sapiens sushi domain containing 2 (SUSD2), mRNA
          Length = 3201

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 13   acaatggctacagcctggacggggcagag 41
            |||| ||||||||||||| ||||||||||
Sbjct: 2299 acaacggctacagcctggccggggcagag 2327



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>emb|Z92546.2|HS65A6 Human DNA sequence from clone CTA-65A6 on chromosome 22q11-12 Contains
             the 3' part of the gene for the ortholog of rat CAIN
             (KIAA0330), the gene for a novel Sushi domain (SCR repeat)
             containing protein similar to Mucins, ESTs, an STS, GSSs
             and two putative CpG islands, complete sequence
          Length = 73511

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 13    acaatggctacagcctggacggggcagag 41
             |||| ||||||||||||| ||||||||||
Sbjct: 18856 acaacggctacagcctggccggggcagag 18828



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>dbj|AK126105.1| Homo sapiens cDNA FLJ44117 fis, clone TESTI4046903
          Length = 4938

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 13   acaatggctacagcctggacggggcagag 41
            |||| ||||||||||||| ||||||||||
Sbjct: 4054 acaacggctacagcctggccggggcagag 4082



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>gb|AC093572.18| Pan troglodytes clone rp43-25g23, complete sequence
          Length = 195652

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 13     acaatggctacagcctggacggggcagag 41
              |||| ||||||||||||| ||||||||||
Sbjct: 127508 acaacggctacagcctggccggggcagag 127480



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>dbj|AK026431.1| Homo sapiens cDNA: FLJ22778 fis, clone KAIA1714
          Length = 2723

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 13   acaatggctacagcctggacggggcagag 41
            |||| ||||||||||||| ||||||||||
Sbjct: 2317 acaacggctacagcctggccggggcagag 2345



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>dbj|AP000353.2| Homo sapiens genomic DNA, chromosome 22q11.2, IGLL region,
             clone:KB318B8
          Length = 123828

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 13    acaatggctacagcctggacggggcagag 41
             |||| ||||||||||||| ||||||||||
Sbjct: 86341 acaacggctacagcctggccggggcagag 86369



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>ref|XM_478986.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 588

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 312 ccacagggggatgaggatga 331
           ||||||||||||||||||||
Sbjct: 520 ccacagggggatgaggatga 539



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>gb|AC163023.4| Mus musculus chromosome 3, clone RP24-247E19, complete sequence
          Length = 166206

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 148   tgaatgatcttacaacagtt 167
             ||||||||||||||||||||
Sbjct: 14913 tgaatgatcttacaacagtt 14894



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>emb|AL391379.12| Human DNA sequence from clone RP13-171J5 on chromosome X Contains a CpG
             island, complete sequence
          Length = 116800

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 6     atttcaaacaatggctacag 25
             ||||||||||||||||||||
Sbjct: 12105 atttcaaacaatggctacag 12086



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 312      ccacagggggatgaggatga 331
                ||||||||||||||||||||
Sbjct: 24141111 ccacagggggatgaggatga 24141092



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>dbj|AP003846.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1710_H11
          Length = 136107

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 312   ccacagggggatgaggatga 331
             ||||||||||||||||||||
Sbjct: 74526 ccacagggggatgaggatga 74507


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,093,534
Number of Sequences: 3902068
Number of extensions: 2093534
Number of successful extensions: 36271
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36238
Number of HSP's gapped (non-prelim): 33
length of query: 369
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 347
effective length of database: 17,147,199,772
effective search space: 5950078320884
effective search space used: 5950078320884
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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