ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal7a11 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK070964.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023067D06, full insert sequence Length = 855 Score = 285 bits (144), Expect = 9e-74 Identities = 330/392 (84%) Strand = Plus / Minus Query: 159 tttctagttcagttgttgcaggcagttgctgtgctctgcatttccttgctggtcgcaaac 218 ||||||| | ||||||||||||| ||||||||||||| |||| || | ||| || || Sbjct: 675 tttctagcttagttgttgcaggctgttgctgtgctctctgtttcttttccggtggcgaaa 616 Query: 219 gacttgccgcacccgcacgtcttcgtcgcgtttgggttctggaagttgaagccgcccccg 278 || ||||| ||||| || ||||| || || ||||||||||||||| ||| || || ||| Sbjct: 615 gatttgccacacccacatgtctttgttgcatttgggttctggaaggcgaatccaccaccg 556 Query: 279 atgagagcgtcgctgtagtccagctccattccaaacatgaagagaaggctctttgggtcg 338 || || ||||| ||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct: 555 ataagggcgtcactgtagtccagctccattccaaacatgaaaagaaggctcttcgggtcg 496 Query: 339 cagactattgtgaaaccctcatactctatgactgaatcgtcagggttggcgcttcctcga 398 |||||||||| || || ||||| |||| |||||||| |||||| |||| | |||| Sbjct: 495 cagactattgcaaagccatcatattctacaactgaatcatcagggctggcattggatcga 436 Query: 399 ctctcaaactccatggtgtaagacatgccagaacatccaccttgcttaactccaatcctc 458 |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| Sbjct: 435 tcttcaaactccatggtgtaagacatgccagaacatccaccttgcctaactccaattctc 376 Query: 459 aaacagaggtcttcattcttttcggctctcattctgttcagatgcttcaaggccttctcg 518 |||||||| ||||||||| ||| || |||||| | |||||||||||||| ||||| || Sbjct: 375 aaacagagatcttcattccgttcagccctcattttattcagatgcttcaaagccttttca 316 Query: 519 gtcaatgagatagctggtgcaatactaccaga 550 |||||||| || || |||||||| |||||||| Sbjct: 315 gtcaatgaaattgcaggtgcaatgctaccaga 284
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 168 bits (85), Expect = 1e-38 Identities = 133/149 (89%) Strand = Plus / Plus Query: 402 tcaaactccatggtgtaagacatgccagaacatccaccttgcttaactccaatcctcaaa 461 |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct: 2437316 tcaaactccatggtgtaagacatgccagaacatccaccttgcctaactccaattctcaaa 2437375 Query: 462 cagaggtcttcattcttttcggctctcattctgttcagatgcttcaaggccttctcggtc 521 ||||| ||||||||| ||| || |||||| | |||||||||||||| ||||| || ||| Sbjct: 2437376 cagagatcttcattccgttcagccctcattttattcagatgcttcaaagccttttcagtc 2437435 Query: 522 aatgagatagctggtgcaatactaccaga 550 ||||| || || |||||||| |||||||| Sbjct: 2437436 aatgaaattgcaggtgcaatgctaccaga 2437464 Score = 139 bits (70), Expect = 1e-29 Identities = 157/186 (84%) Strand = Plus / Plus Query: 159 tttctagttcagttgttgcaggcagttgctgtgctctgcatttccttgctggtcgcaaac 218 ||||||| | ||||||||||||| ||||||||||||| |||| || | ||| || || Sbjct: 2436771 tttctagcttagttgttgcaggctgttgctgtgctctctgtttcttttccggtggcgaaa 2436830 Query: 219 gacttgccgcacccgcacgtcttcgtcgcgtttgggttctggaagttgaagccgcccccg 278 || ||||| ||||| || ||||| || || ||||||||||||||| ||| || || ||| Sbjct: 2436831 gatttgccacacccacatgtctttgttgcatttgggttctggaaggcgaatccaccaccg 2436890 Query: 279 atgagagcgtcgctgtagtccagctccattccaaacatgaagagaaggctctttgggtcg 338 || || ||||| ||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct: 2436891 ataagggcgtcactgtagtccagctccattccaaacatgaaaagaaggctcttcgggtcg 2436950 Query: 339 cagact 344 |||||| Sbjct: 2436951 cagact 2436956
>dbj|AP003767.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0036F10 Length = 149415 Score = 168 bits (85), Expect = 1e-38 Identities = 133/149 (89%) Strand = Plus / Plus Query: 402 tcaaactccatggtgtaagacatgccagaacatccaccttgcttaactccaatcctcaaa 461 |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct: 68774 tcaaactccatggtgtaagacatgccagaacatccaccttgcctaactccaattctcaaa 68833 Query: 462 cagaggtcttcattcttttcggctctcattctgttcagatgcttcaaggccttctcggtc 521 ||||| ||||||||| ||| || |||||| | |||||||||||||| ||||| || ||| Sbjct: 68834 cagagatcttcattccgttcagccctcattttattcagatgcttcaaagccttttcagtc 68893 Query: 522 aatgagatagctggtgcaatactaccaga 550 ||||| || || |||||||| |||||||| Sbjct: 68894 aatgaaattgcaggtgcaatgctaccaga 68922 Score = 139 bits (70), Expect = 1e-29 Identities = 157/186 (84%) Strand = Plus / Plus Query: 159 tttctagttcagttgttgcaggcagttgctgtgctctgcatttccttgctggtcgcaaac 218 ||||||| | ||||||||||||| ||||||||||||| |||| || | ||| || || Sbjct: 68229 tttctagcttagttgttgcaggctgttgctgtgctctctgtttcttttccggtggcgaaa 68288 Query: 219 gacttgccgcacccgcacgtcttcgtcgcgtttgggttctggaagttgaagccgcccccg 278 || ||||| ||||| || ||||| || || ||||||||||||||| ||| || || ||| Sbjct: 68289 gatttgccacacccacatgtctttgttgcatttgggttctggaaggcgaatccaccaccg 68348 Query: 279 atgagagcgtcgctgtagtccagctccattccaaacatgaagagaaggctctttgggtcg 338 || || ||||| ||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct: 68349 ataagggcgtcactgtagtccagctccattccaaacatgaaaagaaggctcttcgggtcg 68408 Query: 339 cagact 344 |||||| Sbjct: 68409 cagact 68414
>emb|CR381684.9| Zebrafish DNA sequence from clone CH211-28P3 in linkage group 23, complete sequence Length = 184232 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 470 ttcattcttttcggctctcattc 492 ||||||||||||||||||||||| Sbjct: 146316 ttcattcttttcggctctcattc 146294
>gb|AY398686.1| Synthetic construct expression cassette for expression of Homo sapiens antithrombin (SERPINC1) cDNA controlled by the Capra hicrus beta-casein (CSN2) gene Length = 14747 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Minus Query: 24 actgaactgaactgtattacaa 45 |||||||||||||||||||||| Sbjct: 11148 actgaactgaactgtattacaa 11127
>emb|AL929317.13| Mouse DNA sequence from clone RP23-239F11 on chromosome 2, complete sequence Length = 32828 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Minus Query: 546 ccagacattgctgttgctgctg 567 |||||||||||||||||||||| Sbjct: 31845 ccagacattgctgttgctgctg 31824
>gb|AC087416.18| Mus musculus strain C57BL/6J chromosome 2 clone rp23-224l16, complete sequence Length = 183349 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Plus Query: 546 ccagacattgctgttgctgctg 567 |||||||||||||||||||||| Sbjct: 172508 ccagacattgctgttgctgctg 172529
>emb|AL805918.5| Mouse DNA sequence from clone RP23-191L7 on chromosome 2, complete sequence Length = 213625 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Plus Query: 546 ccagacattgctgttgctgctg 567 |||||||||||||||||||||| Sbjct: 212608 ccagacattgctgttgctgctg 212629
>gb|AE017351.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 11, complete sequence Length = 1019846 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 161 tctagttcagttgttgcaggc 181 ||||||||||||||||||||| Sbjct: 128774 tctagttcagttgttgcaggc 128794
>gb|AY524963.1| Rhampholeon brevicaudatus isolate 4 recombination activating protein 1 (RAG1) gene, partial cds Length = 2781 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 497 cagatgcttcaaggccttct 516 |||||||||||||||||||| Sbjct: 2069 cagatgcttcaaggccttct 2050
>gb|AC154227.2| Mus musculus BAC clone RP24-142A23 from chromosome 14, complete sequence Length = 156644 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 484 ctctcattctgttcagatgc 503 |||||||||||||||||||| Sbjct: 127995 ctctcattctgttcagatgc 128014
>gb|AY456255.1| Gegeneophis ramaswamii recombination activating protein 1 (RAG-1) gene, partial cds Length = 1509 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 497 cagatgcttcaaggccttct 516 |||||||||||||||||||| Sbjct: 709 cagatgcttcaaggccttct 690
>gb|AC140459.2| Mus musculus BAC clone RP24-129G21 from chromosome 16, complete sequence Length = 177790 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 tctgagtatatctgtgaacc 80 |||||||||||||||||||| Sbjct: 117845 tctgagtatatctgtgaacc 117826
>emb|CR524828.12| Zebrafish DNA sequence from clone CH211-22G2 in linkage group 16, complete sequence Length = 188521 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 attctgagtatatctgtgaa 78 |||||||||||||||||||| Sbjct: 65678 attctgagtatatctgtgaa 65659
>ref|XM_381022.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG00846.1) partial mRNA Length = 2715 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 554 tgctgttgctgctggaggcg 573 |||||||||||||||||||| Sbjct: 2426 tgctgttgctgctggaggcg 2407
>gb|AC140404.3| Mus musculus BAC clone RP23-146B9 from chromosome 5, complete sequence Length = 163710 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 caaactgtagccattcattc 62 |||||||||||||||||||| Sbjct: 101250 caaactgtagccattcattc 101231
>gb|AC138284.9| Mus musculus chromosome 9, clone RP23-356D13, complete sequence Length = 220266 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 tgctgtgctctgcatttcct 204 |||||||||||||||||||| Sbjct: 60981 tgctgtgctctgcatttcct 61000
>gb|BC058851.1| Mus musculus Ttk protein kinase, mRNA (cDNA clone MGC:60685 IMAGE:30023533), complete cds Length = 2906 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 554 tgctgttgctgctggaggcg 573 |||||||||||||||||||| Sbjct: 1481 tgctgttgctgctggaggcg 1462
>ref|XM_949992.1| Theileria annulata strain Ankara hypothetical protein (TA04335) partial mRNA Length = 2310 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 306 attccaaacatgaagagaag 325 |||||||||||||||||||| Sbjct: 2240 attccaaacatgaagagaag 2221
>emb|AL583830.7| Human DNA sequence from clone RP11-172L10 on chromosome 1 Contains the 5' end of a variant of the KCNK2 gene for potassium channel subfamily K member 2 and a translocase of inner mitochondrial membrane 17 homolog A (yeast) (TIMM17A) pseudogene, complete sequence Length = 151469 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 305 cattccaaacatgaagagaa 324 |||||||||||||||||||| Sbjct: 85475 cattccaaacatgaagagaa 85494
>emb|AL136453.3| Human DNA sequence from clone RP1-249K20 on chromosome 10, complete sequence Length = 98368 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 311 aaacatgaagagaaggctctttgg 334 |||||||||||||||| ||||||| Sbjct: 92491 aaacatgaagagaaggttctttgg 92514
>emb|AL109750.5|HSDJ902O5 Human DNA sequence from clone RP5-902O5 on chromosome Xq21.31-22.3 Contains a CpG island, complete sequence Length = 74587 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 acaaactgtagccattcatt 61 |||||||||||||||||||| Sbjct: 48441 acaaactgtagccattcatt 48460
>emb|CR450789.9| Zebrafish DNA sequence from clone DKEY-7P12 in linkage group 8, complete sequence Length = 144569 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 531 gctggtgcaatactaccaga 550 |||||||||||||||||||| Sbjct: 40343 gctggtgcaatactaccaga 40324
>gb|AC099563.3| Homo sapiens chromosome 1 clone RP11-323K10, complete sequence Length = 91282 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 305 cattccaaacatgaagagaa 324 |||||||||||||||||||| Sbjct: 67830 cattccaaacatgaagagaa 67811
>gb|AF228661.4| Homo sapiens chromosome 8 clone CTD-3015B2 map q11-q13, complete sequence Length = 140374 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 catggtaatatcacaccctg 150 |||||||||||||||||||| Sbjct: 131540 catggtaatatcacaccctg 131521
>gb|AF149786.3| Homo sapiens chromosome 8 clone GS1-190e2 map q11-q13, complete sequence Length = 60767 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 catggtaatatcacaccctg 150 |||||||||||||||||||| Sbjct: 46199 catggtaatatcacaccctg 46180
>emb|AL772332.6| Zebrafish DNA sequence from clone CH211-150A22 in linkage group 1 Contains part of a gene similar to human PET112 for PET112-like protein from yeast, two novel genes and seven CpG islands, complete sequence Length = 175762 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 357 tcatactctatgactgaatc 376 |||||||||||||||||||| Sbjct: 101708 tcatactctatgactgaatc 101689
>gb|AC104939.7| Homo sapiens chromosome 8, clone CTD-3015B2, complete sequence Length = 140375 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 catggtaatatcacaccctg 150 |||||||||||||||||||| Sbjct: 131314 catggtaatatcacaccctg 131295
>gb|AE006008.1| Caulobacter crescentus CB15 section 334 of 359 of the complete genome Length = 14619 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 228 cacccgcacgtcttcgtcgc 247 |||||||||||||||||||| Sbjct: 4797 cacccgcacgtcttcgtcgc 4778
>gb|AC104232.5| Homo sapiens chromosome 8, clone RP11-1D12, complete sequence Length = 148933 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 catggtaatatcacaccctg 150 |||||||||||||||||||| Sbjct: 145839 catggtaatatcacaccctg 145858
>gb|AC108466.5| Homo sapiens BAC clone RP11-341K3 from 4, complete sequence Length = 178753 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 acacactgaactgaactgta 39 |||||||||||||||||||| Sbjct: 149308 acacactgaactgaactgta 149289
>gb|AC093832.2| Homo sapiens BAC clone RP11-402L11 from 4, complete sequence Length = 187232 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 300 agctccattccaaacatgaa 319 |||||||||||||||||||| Sbjct: 16352 agctccattccaaacatgaa 16333
>gb|AC023277.5| Homo sapiens BAC clone RP11-438E5 from 4, complete sequence Length = 163257 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 acacactgaactgaactgta 39 |||||||||||||||||||| Sbjct: 12711 acacactgaactgaactgta 12692
>dbj|AK164093.1| Mus musculus 12 days embryo spinal cord cDNA, RIKEN full-length enriched library, clone:C530012F18 product:Ttk protein kinase, full insert sequence Length = 2732 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 554 tgctgttgctgctggaggcg 573 |||||||||||||||||||| Sbjct: 1494 tgctgttgctgctggaggcg 1475
>dbj|AK049200.1| Mus musculus ES cells cDNA, RIKEN full-length enriched library, clone:C330012K12 product:Ttk protein kinase, full insert sequence Length = 1841 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 554 tgctgttgctgctggaggcg 573 |||||||||||||||||||| Sbjct: 1490 tgctgttgctgctggaggcg 1471
>dbj|AK041487.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A630014N10 product:DUAL SPECIFICITY PROTEIN KINASE TTK (EC 2.7.1.-) (ESK) (PYT) homolog [Mus musculus], full insert sequence Length = 2683 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 554 tgctgttgctgctggaggcg 573 |||||||||||||||||||| Sbjct: 1466 tgctgttgctgctggaggcg 1447
>dbj|AK036787.1| Mus musculus adult female vagina cDNA, RIKEN full-length enriched library, clone:9930010A18 product:unclassifiable, full insert sequence Length = 3404 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 185 tgctgtgctctgcatttcct 204 |||||||||||||||||||| Sbjct: 215 tgctgtgctctgcatttcct 196
>gb|AC095349.10| Homo sapiens 3 BAC RP11-714D16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 182618 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 348 gtgaaaccctcatactctat 367 |||||||||||||||||||| Sbjct: 109039 gtgaaaccctcatactctat 109020
>gb|AY523742.1| Gegeneophis sp. KR-2004 recombinase activating protein (RAG-1) gene, partial cds Length = 559 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 497 cagatgcttcaaggccttct 516 |||||||||||||||||||| Sbjct: 338 cagatgcttcaaggccttct 319
>emb|AL954652.3| Zebrafish DNA sequence from clone CH211-239O15 in linkage group 4, complete sequence Length = 152900 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 tattacaaactgtagccatt 57 |||||||||||||||||||| Sbjct: 10331 tattacaaactgtagccatt 10312
>gb|AC137678.11| Mus musculus chromosome 9, clone RP24-484G16, complete sequence Length = 172337 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 249 tttgggttctggaagttgaa 268 |||||||||||||||||||| Sbjct: 44133 tttgggttctggaagttgaa 44152
>ref|NM_009445.1| Mus musculus Ttk protein kinase (Ttk), mRNA Length = 2924 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 554 tgctgttgctgctggaggcg 573 |||||||||||||||||||| Sbjct: 1521 tgctgttgctgctggaggcg 1502
>gb|AC124011.4| Mus musculus BAC clone RP23-218I3 from 9, complete sequence Length = 208088 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 554 tgctgttgctgctggaggcg 573 |||||||||||||||||||| Sbjct: 126382 tgctgttgctgctggaggcg 126363
>gb|AC164564.3| Mus musculus BAC clone RP23-96N11 from chromosome 7, complete sequence Length = 247415 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 433 atccaccttgcttaactcca 452 |||||||||||||||||||| Sbjct: 100061 atccaccttgcttaactcca 100042
>emb|AL606986.27| Mouse DNA sequence from clone RP23-258K3 on chromosome 4, complete sequence Length = 219634 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 ctgtgctctgcatttccttg 206 |||||||||||||||||||| Sbjct: 159144 ctgtgctctgcatttccttg 159125
>gb|M86377.1|MUSESKK Mouse esk kinase mRNA, complete cds Length = 2924 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 554 tgctgttgctgctggaggcg 573 |||||||||||||||||||| Sbjct: 1521 tgctgttgctgctggaggcg 1502
>gb|AC156638.2| Mus musculus BAC clone RP24-255L24 from chromosome 9, complete sequence Length = 162792 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 554 tgctgttgctgctggaggcg 573 |||||||||||||||||||| Sbjct: 137144 tgctgttgctgctggaggcg 137163 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,156,700 Number of Sequences: 3902068 Number of extensions: 5156700 Number of successful extensions: 120183 Number of sequences better than 10.0: 47 Number of HSP's better than 10.0 without gapping: 47 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 120053 Number of HSP's gapped (non-prelim): 127 length of query: 638 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 615 effective length of database: 17,143,297,704 effective search space: 10543128087960 effective search space used: 10543128087960 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
