ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal13k06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK059049.1| Oryza sativa (japonica cultivar-group) cDNA clon... 317 2e-83
2dbj|AK068554.1| Oryza sativa (japonica cultivar-group) cDNA clon... 283 2e-73
3dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 131 2e-27
4dbj|AP005249.3| Oryza sativa (japonica cultivar-group) genomic D... 131 2e-27
5dbj|AP005478.3| Oryza sativa (japonica cultivar-group) genomic D... 131 2e-27
6gb|BT012883.1| Lycopersicon esculentum clone 113986R, mRNA sequence 54 4e-04
7gb|AC112203.2| Homo sapiens chromosome 5 clone RP11-72K17, compl... 44 0.34
8ref|NM_101549.3| Arabidopsis thaliana unknown protein AT1G16880 ... 42 1.3
9ref|NM_010864.1| Mus musculus myosin Va (Myo5a), mRNA 42 1.3
10gb|AC110822.6| Mus musculus BAC clone RP24-226H7 from chromosome... 42 1.3
11emb|AL161444.18| Human DNA sequence from clone RP11-312C2 on chr... 42 1.3
12emb|X57377.1|MMDILUTE Mouse dilute myosin heavy chain gene for n... 42 1.3
13ref|NM_022178.1| Rattus norvegicus myosin Va (Myo5a), mRNA 42 1.3
14gb|BT006317.1| Arabidopsis thaliana At1g16880 mRNA, complete cds 42 1.3
15dbj|AK002362.1| Mus musculus adult male kidney cDNA, RIKEN full-... 42 1.3
16gb|AF386988.1|AF386988 Arabidopsis thaliana Unknown protein (F6I... 42 1.3
17emb|BX814468.1|CNS0AC2H Arabidopsis thaliana Full-length cDNA Co... 42 1.3
18emb|BX814192.1|CNS0AC6C Arabidopsis thaliana Full-length cDNA Co... 42 1.3
19emb|BX813743.1|CNS0AC5W Arabidopsis thaliana Full-length cDNA Co... 42 1.3
20emb|BX841809.1|CNS09Y1P Arabidopsis thaliana Full-length cDNA Co... 42 1.3
21emb|CT033761.14| Mouse DNA sequence from clone RP23-203P12 on ch... 42 1.3
22gb|AC133947.3| Mus musculus BAC clone RP24-189I2 from 9, complet... 42 1.3
23dbj|AB035736.1| Rattus norvegicus Myo5a mRNA for myosin-Va, comp... 42 1.3
24ref|NM_180459.1| Arabidopsis thaliana protein binding / ubiquiti... 40 5.3
25gb|AC127028.18| Mus musculus chromosome 18, clone RP23-345J21, c... 40 5.3
26gb|BT000865.1| Arabidopsis thaliana At5g08140/T22D6_80 mRNA, com... 40 5.3
27gb|AC102556.7| Mus musculus chromosome 18, clone RP23-177F9, com... 40 5.3
28emb|AL357612.1|ATT22D6 Arabidopsis thaliana DNA chromosome 5, BA... 40 5.3
29gb|AC122725.30| Medicago truncatula clone mth2-4c11, complete se... 40 5.3
30gb|AC153760.3| Loxodonta africana clone VMRC15-151E6, complete s... 40 5.3
31gb|AC091184.6| Homo sapiens chromosome 8, clone RP11-353O11, com... 40 5.3
32gb|AY058122.1| Arabidopsis thaliana AT5g08140/T22D6_80 mRNA, com... 40 5.3
33dbj|AK221247.1| Arabidopsis thaliana mRNA for hypothetical prote... 40 5.3
34dbj|AK220636.1| Arabidopsis thaliana mRNA for hypothetical prote... 40 5.3
35emb|BX829848.1|CNS0A025 Arabidopsis thaliana Full-length cDNA Co... 40 5.3
36emb|BX831414.1|CNS09ZD4 Arabidopsis thaliana Full-length cDNA Co... 40 5.3
37gb|AC156640.2| Mus musculus BAC clone RP23-313M2 from chromosome... 40 5.3
38gb|AC026237.4|AC026237 Arabidopsis thaliana chromosome I BAC F17... 40 5.3
39gb|AC051629.3|AC051629 Arabidopsis thaliana chromosome I BAC F6I... 40 5.3
40dbj|AK117658.1| Arabidopsis thaliana At5g08139 mRNA for unknown ... 40 5.3
41dbj|AP002379.4| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 5.3
42dbj|AP003730.3| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 5.3
43emb|AL844546.8| Mouse DNA sequence from clone RP23-243I3 on chro... 40 5.3 
>dbj|AK059049.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-E01, full
           insert sequence
          Length = 430

 Score =  317 bits (160), Expect = 2e-83
 Identities = 256/288 (88%)
 Strand = Plus / Minus

                                                                       
Query: 108 atctgcctagaaactggcatcctctgtcgtcggcctcctcaagaaataacgcaagctatt 167
           |||||||||| ||||| | ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 311 atctgcctagtaactgccctcctctgtcgtcggcctcctcaagaaatagcgcaagctatt 252

                                                                       
Query: 168 agcaagaacctgttgcaaagccttgattaatggcttgccccggtaactgacatggaattt 227
           |||||||||||| ||||| || ||||| ||||| || ||||  |||||||||||||||||
Sbjct: 251 agcaagaacctgctgcaaggctttgatcaatggtttacccctataactgacatggaattt 192

                                                                       
Query: 228 tgccttggccagtagcccctcggtgtcaaattctccagattggacagtgatattgatgtc 287
           ||| || |||||||| ||||| ||||||||||||||||||||||| ||||| ||||||||
Sbjct: 191 tgctttagccagtaggccctcagtgtcaaattctccagattggacggtgatgttgatgtc 132

                                                                       
Query: 288 agcaatgatcttaactagatcaaccaacaaccctggacggtcagctgattccacaacaag 347
           | ||||||||||||| || ||||||||||| ||||| |||||||||| |||||| |||||
Sbjct: 131 atcaatgatcttaacaaggtcaaccaacaaacctggtcggtcagctgtttccactacaag 72

                                                           
Query: 348 taaacttctttcaggaccatcgtcatagatttctatgtgagttgctat 395
           ||| ||||| ||||| ||||| ||||| || |||||||| ||||||||
Sbjct: 71  taagcttctgtcagggccatcatcatatatgtctatgtgggttgctat 24
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>dbj|AK068554.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155B11, full
            insert sequence
          Length = 1782

 Score =  283 bits (143), Expect = 2e-73
 Identities = 218/243 (89%)
 Strand = Plus / Minus

                                                                        
Query: 108  atctgcctagaaactggcatcctctgtcgtcggcctcctcaagaaataacgcaagctatt 167
            |||||||||| ||||| | ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1397 atctgcctagtaactgccctcctctgtcgtcggcctcctcaagaaatagcgcaagctatt 1338

                                                                        
Query: 168  agcaagaacctgttgcaaagccttgattaatggcttgccccggtaactgacatggaattt 227
            |||||||||||| ||||| || ||||| ||||| || ||||  |||||||||||||||||
Sbjct: 1337 agcaagaacctgctgcaaggctttgatcaatggtttacccctataactgacatggaattt 1278

                                                                        
Query: 228  tgccttggccagtagcccctcggtgtcaaattctccagattggacagtgatattgatgtc 287
            ||| || |||||||| ||||| ||||||||||||||||||||||| ||||| ||||||||
Sbjct: 1277 tgctttagccagtaggccctcagtgtcaaattctccagattggacggtgatgttgatgtc 1218

                                                                        
Query: 288  agcaatgatcttaactagatcaaccaacaaccctggacggtcagctgattccacaacaag 347
            | ||||||||||||| || ||||||||||| ||||| |||||||||| |||||| |||||
Sbjct: 1217 atcaatgatcttaacaaggtcaaccaacaaacctggtcggtcagctgtttccactacaag 1158

               
Query: 348  taa 350
            |||
Sbjct: 1157 taa 1155
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score =  131 bits (66), Expect = 2e-27
 Identities = 96/106 (90%)
 Strand = Plus / Plus

                                                                           
Query: 245     cctcggtgtcaaattctccagattggacagtgatattgatgtcagcaatgatcttaacta 304
               |||| ||||||||||||||||||||||| ||||| ||||||||| ||||||||||||| |
Sbjct: 8663409 cctcagtgtcaaattctccagattggacggtgatgttgatgtcatcaatgatcttaacaa 8663468

                                                             
Query: 305     gatcaaccaacaaccctggacggtcagctgattccacaacaagtaa 350
               | ||||||||||| ||||| |||||||||| |||||| ||||||||
Sbjct: 8663469 ggtcaaccaacaaacctggtcggtcagctgtttccactacaagtaa 8663514



 Score =  111 bits (56), Expect = 2e-21
 Identities = 68/72 (94%)
 Strand = Plus / Plus

                                                                           
Query: 108     atctgcctagaaactggcatcctctgtcgtcggcctcctcaagaaataacgcaagctatt 167
               |||||||||| ||||| | ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 8663000 atctgcctagtaactgccctcctctgtcgtcggcctcctcaagaaatagcgcaagctatt 8663059

                           
Query: 168     agcaagaacctg 179
               ||||||||||||
Sbjct: 8663060 agcaagaacctg 8663071



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 62/73 (84%)
 Strand = Plus / Plus

                                                                           
Query: 175     acctgttgcaaagccttgattaatggcttgccccggtaactgacatggaattttgccttg 234
               ||||| ||||| || ||||| ||||| || ||||  |||||||||||||||||||| || 
Sbjct: 8663258 acctgctgcaaggctttgatcaatggtttacccctataactgacatggaattttgcttta 8663317

                            
Query: 235     gccagtagcccct 247
               |||||||| ||||
Sbjct: 8663318 gccagtaggccct 8663330
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>dbj|AP005249.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBa0087F21
          Length = 187401

 Score =  131 bits (66), Expect = 2e-27
 Identities = 96/106 (90%)
 Strand = Plus / Plus

                                                                          
Query: 245    cctcggtgtcaaattctccagattggacagtgatattgatgtcagcaatgatcttaacta 304
              |||| ||||||||||||||||||||||| ||||| ||||||||| ||||||||||||| |
Sbjct: 175320 cctcagtgtcaaattctccagattggacggtgatgttgatgtcatcaatgatcttaacaa 175379

                                                            
Query: 305    gatcaaccaacaaccctggacggtcagctgattccacaacaagtaa 350
              | ||||||||||| ||||| |||||||||| |||||| ||||||||
Sbjct: 175380 ggtcaaccaacaaacctggtcggtcagctgtttccactacaagtaa 175425



 Score =  111 bits (56), Expect = 2e-21
 Identities = 68/72 (94%)
 Strand = Plus / Plus

                                                                          
Query: 108    atctgcctagaaactggcatcctctgtcgtcggcctcctcaagaaataacgcaagctatt 167
              |||||||||| ||||| | ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 174911 atctgcctagtaactgccctcctctgtcgtcggcctcctcaagaaatagcgcaagctatt 174970

                          
Query: 168    agcaagaacctg 179
              ||||||||||||
Sbjct: 174971 agcaagaacctg 174982



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 62/73 (84%)
 Strand = Plus / Plus

                                                                          
Query: 175    acctgttgcaaagccttgattaatggcttgccccggtaactgacatggaattttgccttg 234
              ||||| ||||| || ||||| ||||| || ||||  |||||||||||||||||||| || 
Sbjct: 175169 acctgctgcaaggctttgatcaatggtttacccctataactgacatggaattttgcttta 175228

                           
Query: 235    gccagtagcccct 247
              |||||||| ||||
Sbjct: 175229 gccagtaggccct 175241
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>dbj|AP005478.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
            clone:OSJNBb0070J06
          Length = 142303

 Score =  131 bits (66), Expect = 2e-27
 Identities = 96/106 (90%)
 Strand = Plus / Plus

                                                                        
Query: 245  cctcggtgtcaaattctccagattggacagtgatattgatgtcagcaatgatcttaacta 304
            |||| ||||||||||||||||||||||| ||||| ||||||||| ||||||||||||| |
Sbjct: 6388 cctcagtgtcaaattctccagattggacggtgatgttgatgtcatcaatgatcttaacaa 6447

                                                          
Query: 305  gatcaaccaacaaccctggacggtcagctgattccacaacaagtaa 350
            | ||||||||||| ||||| |||||||||| |||||| ||||||||
Sbjct: 6448 ggtcaaccaacaaacctggtcggtcagctgtttccactacaagtaa 6493



 Score =  111 bits (56), Expect = 2e-21
 Identities = 68/72 (94%)
 Strand = Plus / Plus

                                                                        
Query: 108  atctgcctagaaactggcatcctctgtcgtcggcctcctcaagaaataacgcaagctatt 167
            |||||||||| ||||| | ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 5979 atctgcctagtaactgccctcctctgtcgtcggcctcctcaagaaatagcgcaagctatt 6038

                        
Query: 168  agcaagaacctg 179
            ||||||||||||
Sbjct: 6039 agcaagaacctg 6050



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 62/73 (84%)
 Strand = Plus / Plus

                                                                        
Query: 175  acctgttgcaaagccttgattaatggcttgccccggtaactgacatggaattttgccttg 234
            ||||| ||||| || ||||| ||||| || ||||  |||||||||||||||||||| || 
Sbjct: 6237 acctgctgcaaggctttgatcaatggtttacccctataactgacatggaattttgcttta 6296

                         
Query: 235  gccagtagcccct 247
            |||||||| ||||
Sbjct: 6297 gccagtaggccct 6309
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>gb|BT012883.1| Lycopersicon esculentum clone 113986R, mRNA sequence
          Length = 1501

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                           
Query: 217  acatggaattttgccttggccagtagcccctcggtgtcaaattctcc 263
            ||||| ||||||||||| || || || ||||||||||||||||||||
Sbjct: 1252 acatgaaattttgccttagctagcagtccctcggtgtcaaattctcc 1206



 Score = 50.1 bits (25), Expect = 0.005
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                     
Query: 142  ctcctcaagaaataacgcaagctattagcaagaacctgttg 182
            ||||||||| |||| |||||||| || ||||||||||||||
Sbjct: 1327 ctcctcaagtaatagcgcaagctgtttgcaagaacctgttg 1287
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>gb|AC112203.2| Homo sapiens chromosome 5 clone RP11-72K17, complete sequence
          Length = 165916

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 63    aaatatcatgtatcatgaacta 84
             ||||||||||||||||||||||
Sbjct: 96558 aaatatcatgtatcatgaacta 96537
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>ref|NM_101549.3| Arabidopsis thaliana unknown protein AT1G16880 transcript variant
           AT1G16880.1 mRNA, complete cds
          Length = 1188

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 244 ccctcggtgtcaaattctccagatt 268
           ||||||||||| |||||||||||||
Sbjct: 875 ccctcggtgtcgaattctccagatt 851
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>ref|NM_010864.1| Mus musculus myosin Va (Myo5a), mRNA
          Length = 7087

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 280  ttgatgtcagcaatgatctta 300
            |||||||||||||||||||||
Sbjct: 4640 ttgatgtcagcaatgatctta 4620
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>gb|AC110822.6| Mus musculus BAC clone RP24-226H7 from chromosome 9, complete sequence
          Length = 144131

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 280    ttgatgtcagcaatgatctta 300
              |||||||||||||||||||||
Sbjct: 141086 ttgatgtcagcaatgatctta 141066
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>emb|AL161444.18| Human DNA sequence from clone RP11-312C2 on chromosome 9, complete
             sequence
          Length = 150563

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 288   agcaatgatcttaactagatc 308
             |||||||||||||||||||||
Sbjct: 13075 agcaatgatcttaactagatc 13095
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>emb|X57377.1|MMDILUTE Mouse dilute myosin heavy chain gene for novel heavy chain with
            unique C-terminal region
          Length = 7087

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 280  ttgatgtcagcaatgatctta 300
            |||||||||||||||||||||
Sbjct: 4640 ttgatgtcagcaatgatctta 4620
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>ref|NM_022178.1| Rattus norvegicus myosin Va (Myo5a), mRNA
          Length = 5620

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 280  ttgatgtcagcaatgatctta 300
            |||||||||||||||||||||
Sbjct: 4565 ttgatgtcagcaatgatctta 4545
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>gb|BT006317.1| Arabidopsis thaliana At1g16880 mRNA, complete cds
          Length = 873

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 244 ccctcggtgtcaaattctccagatt 268
           ||||||||||| |||||||||||||
Sbjct: 743 ccctcggtgtcgaattctccagatt 719
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>dbj|AK002362.1| Mus musculus adult male kidney cDNA, RIKEN full-length enriched
            library, clone:0610009A05 product:myosin Va, full insert
            sequence
          Length = 2641

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 280  ttgatgtcagcaatgatctta 300
            |||||||||||||||||||||
Sbjct: 1188 ttgatgtcagcaatgatctta 1168
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>gb|AF386988.1|AF386988 Arabidopsis thaliana Unknown protein (F6I1.12) mRNA, complete cds
          Length = 1103

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 244 ccctcggtgtcaaattctccagatt 268
           ||||||||||| |||||||||||||
Sbjct: 827 ccctcggtgtcgaattctccagatt 803
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>emb|BX814468.1|CNS0AC2H Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB75ZF08 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1109

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 244 ccctcggtgtcaaattctccagatt 268
           ||||||||||| |||||||||||||
Sbjct: 876 ccctcggtgtcgaattctccagatt 852
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>emb|BX814192.1|CNS0AC6C Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB60ZC04 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1133

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 244 ccctcggtgtcaaattctccagatt 268
           ||||||||||| |||||||||||||
Sbjct: 871 ccctcggtgtcgaattctccagatt 847
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>emb|BX813743.1|CNS0AC5W Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB37ZF06 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1122

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 244 ccctcggtgtcaaattctccagatt 268
           ||||||||||| |||||||||||||
Sbjct: 908 ccctcggtgtcgaattctccagatt 884
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>emb|BX841809.1|CNS09Y1P Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS1ZA11 of Adult vegetative tissue of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1298

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 244  ccctcggtgtcaaattctccagatt 268
            ||||||||||| |||||||||||||
Sbjct: 1062 ccctcggtgtcgaattctccagatt 1038
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>emb|CT033761.14| Mouse DNA sequence from clone RP23-203P12 on chromosome 9, complete
              sequence
          Length = 208050

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 280    ttgatgtcagcaatgatctta 300
              |||||||||||||||||||||
Sbjct: 194998 ttgatgtcagcaatgatctta 194978
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>gb|AC133947.3| Mus musculus BAC clone RP24-189I2 from 9, complete sequence
          Length = 168997

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 280   ttgatgtcagcaatgatctta 300
             |||||||||||||||||||||
Sbjct: 22342 ttgatgtcagcaatgatctta 22322
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>dbj|AB035736.1| Rattus norvegicus Myo5a mRNA for myosin-Va, complete cds
          Length = 5620

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 280  ttgatgtcagcaatgatctta 300
            |||||||||||||||||||||
Sbjct: 4565 ttgatgtcagcaatgatctta 4545
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>ref|NM_180459.1| Arabidopsis thaliana protein binding / ubiquitin-protein ligase/
           zinc ion binding AT5G08139 mRNA, complete cds
          Length = 1520

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 273 agtgatattgatgtcagcaatgat 296
           |||||||||||||| |||||||||
Sbjct: 347 agtgatattgatgttagcaatgat 370
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>gb|AC127028.18| Mus musculus chromosome 18, clone RP23-345J21, complete sequence
          Length = 191473

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 212   aactgacatggaattttgccttgg 235
             |||||||||||| |||||||||||
Sbjct: 73697 aactgacatggagttttgccttgg 73720
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>gb|BT000865.1| Arabidopsis thaliana At5g08140/T22D6_80 mRNA, complete cds
          Length = 1131

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 273 agtgatattgatgtcagcaatgat 296
           |||||||||||||| |||||||||
Sbjct: 205 agtgatattgatgttagcaatgat 228
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>gb|AC102556.7| Mus musculus chromosome 18, clone RP23-177F9, complete sequence
          Length = 220133

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 184    aaagccttgattaatggctt 203
              ||||||||||||||||||||
Sbjct: 121501 aaagccttgattaatggctt 121520
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>emb|AL357612.1|ATT22D6 Arabidopsis thaliana DNA chromosome 5, BAC clone T22D6 (ESSA project)
          Length = 89988

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 273   agtgatattgatgtcagcaatgat 296
             |||||||||||||| |||||||||
Sbjct: 43360 agtgatattgatgttagcaatgat 43383
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>gb|AC122725.30| Medicago truncatula clone mth2-4c11, complete sequence
          Length = 134892

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Plus

                                             
Query: 63    aaatatcatgt-atcatgaactatcataaagt 93
             ||||||||||| || |||||||||||||||||
Sbjct: 11685 aaatatcatgtgatgatgaactatcataaagt 11716
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>gb|AC153760.3| Loxodonta africana clone VMRC15-151E6, complete sequence
          Length = 130127

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 168   agcaagaacctgttgcaaagcctt 191
             |||| |||||||||||||||||||
Sbjct: 86311 agcatgaacctgttgcaaagcctt 86334
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>gb|AC091184.6| Homo sapiens chromosome 8, clone RP11-353O11, complete sequence
          Length = 142867

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 254   caaattctccagattggaca 273
             ||||||||||||||||||||
Sbjct: 44695 caaattctccagattggaca 44714
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>gb|AY058122.1| Arabidopsis thaliana AT5g08140/T22D6_80 mRNA, complete cds
          Length = 1472

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 273 agtgatattgatgtcagcaatgat 296
           |||||||||||||| |||||||||
Sbjct: 347 agtgatattgatgttagcaatgat 370
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>dbj|AK221247.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds,
           clone: RAFL24-02-J20
          Length = 1518

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 273 agtgatattgatgtcagcaatgat 296
           |||||||||||||| |||||||||
Sbjct: 327 agtgatattgatgttagcaatgat 350
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>dbj|AK220636.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds,
           clone: RAFL21-55-K19
          Length = 1480

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 273 agtgatattgatgtcagcaatgat 296
           |||||||||||||| |||||||||
Sbjct: 319 agtgatattgatgttagcaatgat 342
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>emb|BX829848.1|CNS0A025 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB40ZE11 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1478

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 273 agtgatattgatgtcagcaatgat 296
           |||||||||||||| |||||||||
Sbjct: 335 agtgatattgatgttagcaatgat 358
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>emb|BX831414.1|CNS09ZD4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS88ZC12 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1448

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 273 agtgatattgatgtcagcaatgat 296
           |||||||||||||| |||||||||
Sbjct: 299 agtgatattgatgttagcaatgat 322
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>gb|AC156640.2| Mus musculus BAC clone RP23-313M2 from chromosome 9, complete sequence
          Length = 175708

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 70    atgtatcatgaactatcata 89
             ||||||||||||||||||||
Sbjct: 69388 atgtatcatgaactatcata 69369
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>gb|AC026237.4|AC026237 Arabidopsis thaliana chromosome I BAC F17F16 genomic sequence, complete
             sequence
          Length = 90498

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 245   cctcggtgtcaaattctccagatt 268
             |||||||||| |||||||||||||
Sbjct: 25126 cctcggtgtcgaattctccagatt 25149
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>gb|AC051629.3|AC051629 Arabidopsis thaliana chromosome I BAC F6I1 genomic sequence, complete
             sequence
          Length = 93677

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 245   cctcggtgtcaaattctccagatt 268
             |||||||||| |||||||||||||
Sbjct: 71823 cctcggtgtcgaattctccagatt 71846
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>dbj|AK117658.1| Arabidopsis thaliana At5g08139 mRNA for unknown protein, complete
           cds, clone: RAFL17-31-L11
          Length = 1520

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 273 agtgatattgatgtcagcaatgat 296
           |||||||||||||| |||||||||
Sbjct: 347 agtgatattgatgttagcaatgat 370
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>dbj|AP002379.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-463F4, complete
              sequence
          Length = 215986

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 290    caatgatcttaactagatca 309
              ||||||||||||||||||||
Sbjct: 131056 caatgatcttaactagatca 131037
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>dbj|AP003730.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-379J13, complete
              sequences
          Length = 226171

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 290    caatgatcttaactagatca 309
              ||||||||||||||||||||
Sbjct: 214171 caatgatcttaactagatca 214152
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>emb|AL844546.8| Mouse DNA sequence from clone RP23-243I3 on chromosome 2, complete
             sequence
          Length = 170475

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 236   ccagtagcccctcggtgtca 255
             ||||||||||||||||||||
Sbjct: 49896 ccagtagcccctcggtgtca 49877


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,138,672
Number of Sequences: 3902068
Number of extensions: 3138672
Number of successful extensions: 52496
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 52412
Number of HSP's gapped (non-prelim): 85
length of query: 395
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 373
effective length of database: 17,147,199,772
effective search space: 6395905514956
effective search space used: 6395905514956
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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