ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal13j06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK059049.1| Oryza sativa (japonica cultivar-group) cDNA clon... 242 7e-61
2dbj|AK068554.1| Oryza sativa (japonica cultivar-group) cDNA clon... 196 4e-47
3dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 115 1e-22
4dbj|AP005249.3| Oryza sativa (japonica cultivar-group) genomic D... 115 1e-22
5dbj|AP005478.3| Oryza sativa (japonica cultivar-group) genomic D... 115 1e-22
6gb|BT012883.1| Lycopersicon esculentum clone 113986R, mRNA sequence 54 3e-04
7ref|NM_101549.3| Arabidopsis thaliana unknown protein AT1G16880 ... 42 1.3
8ref|NM_010864.1| Mus musculus myosin Va (Myo5a), mRNA 42 1.3
9gb|AC110822.6| Mus musculus BAC clone RP24-226H7 from chromosome... 42 1.3
10emb|X57377.1|MMDILUTE Mouse dilute myosin heavy chain gene for n... 42 1.3
11ref|NM_022178.1| Rattus norvegicus myosin Va (Myo5a), mRNA 42 1.3
12gb|BT006317.1| Arabidopsis thaliana At1g16880 mRNA, complete cds 42 1.3
13dbj|AK002362.1| Mus musculus adult male kidney cDNA, RIKEN full-... 42 1.3
14gb|AF386988.1|AF386988 Arabidopsis thaliana Unknown protein (F6I... 42 1.3
15emb|BX814468.1|CNS0AC2H Arabidopsis thaliana Full-length cDNA Co... 42 1.3
16emb|BX814192.1|CNS0AC6C Arabidopsis thaliana Full-length cDNA Co... 42 1.3
17emb|BX813743.1|CNS0AC5W Arabidopsis thaliana Full-length cDNA Co... 42 1.3
18emb|BX841809.1|CNS09Y1P Arabidopsis thaliana Full-length cDNA Co... 42 1.3
19emb|CT033761.14| Mouse DNA sequence from clone RP23-203P12 on ch... 42 1.3
20gb|AC133947.3| Mus musculus BAC clone RP24-189I2 from 9, complet... 42 1.3
21dbj|AB035736.1| Rattus norvegicus Myo5a mRNA for myosin-Va, comp... 42 1.3
22ref|NM_180459.1| Arabidopsis thaliana protein binding / ubiquiti... 40 5.1
23gb|AC127028.18| Mus musculus chromosome 18, clone RP23-345J21, c... 40 5.1
24gb|BT000865.1| Arabidopsis thaliana At5g08140/T22D6_80 mRNA, com... 40 5.1
25gb|AC117668.9| Mus musculus, clone RP23-367H12, complete sequence 40 5.1
26gb|AC102556.7| Mus musculus chromosome 18, clone RP23-177F9, com... 40 5.1
27emb|AL357612.1|ATT22D6 Arabidopsis thaliana DNA chromosome 5, BA... 40 5.1
28gb|AC153760.3| Loxodonta africana clone VMRC15-151E6, complete s... 40 5.1
29gb|AC091184.6| Homo sapiens chromosome 8, clone RP11-353O11, com... 40 5.1
30gb|AY058122.1| Arabidopsis thaliana AT5g08140/T22D6_80 mRNA, com... 40 5.1
31dbj|AK221247.1| Arabidopsis thaliana mRNA for hypothetical prote... 40 5.1
32dbj|AK220636.1| Arabidopsis thaliana mRNA for hypothetical prote... 40 5.1
33emb|BX829848.1|CNS0A025 Arabidopsis thaliana Full-length cDNA Co... 40 5.1
34emb|BX831414.1|CNS09ZD4 Arabidopsis thaliana Full-length cDNA Co... 40 5.1
35gb|AC154703.2| Mus musculus BAC clone RP24-349H1 from chromosome... 40 5.1
36gb|AC026237.4|AC026237 Arabidopsis thaliana chromosome I BAC F17... 40 5.1
37gb|AC051629.3|AC051629 Arabidopsis thaliana chromosome I BAC F6I... 40 5.1
38dbj|AK117658.1| Arabidopsis thaliana At5g08139 mRNA for unknown ... 40 5.1
39emb|AL844546.8| Mouse DNA sequence from clone RP23-243I3 on chro... 40 5.1 
>dbj|AK059049.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-E01, full
           insert sequence
          Length = 430

 Score =  242 bits (122), Expect = 7e-61
 Identities = 224/260 (86%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaaataacgcangctnttagcaagaacctgttgcaaagccttgattaatggcttgccccg 60
           |||||| |||| ||| |||||||||||||| ||||| || ||||| ||||| || |||| 
Sbjct: 269 gaaatagcgcaagctattagcaagaacctgctgcaaggctttgatcaatggtttacccct 210

                                                                       
Query: 61  gtaactgacatggaattttgccttggccagtagcccctcggtgtcaaattctccagattg 120
            |||||||||||||||||||| || |||||||| ||||| ||||||||||||||||||||
Sbjct: 209 ataactgacatggaattttgctttagccagtaggccctcagtgtcaaattctccagattg 150

                                                                       
Query: 121 gacagtgatattgatgtcagcaatgatcttaactanatcaaccaacaaccctggacggtc 180
           ||| ||||| ||||||||| ||||||||||||| |  ||||||||||| ||||| |||||
Sbjct: 149 gacggtgatgttgatgtcatcaatgatcttaacaaggtcaaccaacaaacctggtcggtc 90

                                                                       
Query: 181 agctgattccacaacangnaaacttctttcaggaccatcgtcatagatttntatgcgagt 240
           ||||| |||||| ||| | || ||||| ||||| ||||| ||||| || | |||| | ||
Sbjct: 89  agctgtttccactacaagtaagcttctgtcagggccatcatcatatatgtctatgtgggt 30

                               
Query: 241 tgctatgtccacatcaacca 260
           ||||||||||||||||||||
Sbjct: 29  tgctatgtccacatcaacca 10
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>dbj|AK068554.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155B11, full
            insert sequence
          Length = 1782

 Score =  196 bits (99), Expect = 4e-47
 Identities = 168/192 (87%)
 Strand = Plus / Minus

                                                                        
Query: 1    gaaataacgcangctnttagcaagaacctgttgcaaagccttgattaatggcttgccccg 60
            |||||| |||| ||| |||||||||||||| ||||| || ||||| ||||| || |||| 
Sbjct: 1355 gaaatagcgcaagctattagcaagaacctgctgcaaggctttgatcaatggtttacccct 1296

                                                                        
Query: 61   gtaactgacatggaattttgccttggccagtagcccctcggtgtcaaattctccagattg 120
             |||||||||||||||||||| || |||||||| ||||| ||||||||||||||||||||
Sbjct: 1295 ataactgacatggaattttgctttagccagtaggccctcagtgtcaaattctccagattg 1236

                                                                        
Query: 121  gacagtgatattgatgtcagcaatgatcttaactanatcaaccaacaaccctggacggtc 180
            ||| ||||| ||||||||| ||||||||||||| |  ||||||||||| ||||| |||||
Sbjct: 1235 gacggtgatgttgatgtcatcaatgatcttaacaaggtcaaccaacaaacctggtcggtc 1176

                        
Query: 181  agctgattccac 192
            ||||| ||||||
Sbjct: 1175 agctgtttccac 1164



 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 142/173 (82%), Gaps = 1/173 (0%)
 Strand = Plus / Minus

                                                                       
Query: 203 cttctttcaggaccatcgtcatagatttntatgcgagttgctatgtccacatcaaccact 262
           ||||| ||||| ||||| ||||| || | |||| | |||||||||||||||||||||| |
Sbjct: 780 cttctgtcagggccatcatcatatatgtctatgtgggttgctatgtccacatcaaccagt 721

                                                                       
Query: 263 tacgtanggggctntagcccaaaagttgcacccatggccaattgactgctagcttcanga 322
           |  ||| |||||| | | ||||||||||||||||  |||||||| |||||||||||  | 
Sbjct: 720 tctgtagggggctctggaccaaaagttgcacccagagccaattggctgctagcttctggg 661

                                                                
Query: 323 tgatattcangcatgttgttgataattg-aagtcttactgcttctaacaactc 374
           || || | |  ||||||||| |||||||  || | ||||||||||||||||||
Sbjct: 660 tggtactgaatcatgttgtttataattgtcagccgtactgcttctaacaactc 608
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score =  115 bits (58), Expect = 1e-22
 Identities = 87/97 (89%)
 Strand = Plus / Plus

                                                                           
Query: 96      cctcggtgtcaaattctccagattggacagtgatattgatgtcagcaatgatcttaacta 155
               |||| ||||||||||||||||||||||| ||||| ||||||||| ||||||||||||| |
Sbjct: 8663409 cctcagtgtcaaattctccagattggacggtgatgttgatgtcatcaatgatcttaacaa 8663468

                                                    
Query: 156     natcaaccaacaaccctggacggtcagctgattccac 192
                 ||||||||||| ||||| |||||||||| ||||||
Sbjct: 8663469 ggtcaaccaacaaacctggtcggtcagctgtttccac 8663505



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 62/73 (84%)
 Strand = Plus / Plus

                                                                           
Query: 26      acctgttgcaaagccttgattaatggcttgccccggtaactgacatggaattttgccttg 85
               ||||| ||||| || ||||| ||||| || ||||  |||||||||||||||||||| || 
Sbjct: 8663258 acctgctgcaaggctttgatcaatggtttacccctataactgacatggaattttgcttta 8663317

                            
Query: 86      gccagtagcccct 98
               |||||||| ||||
Sbjct: 8663318 gccagtaggccct 8663330



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 46/53 (86%)
 Strand = Plus / Plus

                                                                    
Query: 266     gtanggggctntagcccaaaagttgcacccatggccaattgactgctagcttc 318
               ||| |||||| | | ||||||||||||||||  |||||||| |||||||||||
Sbjct: 8664170 gtagggggctctggaccaaaagttgcacccagagccaattggctgctagcttc 8664222



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 49/57 (85%)
 Strand = Plus / Plus

                                                                        
Query: 203     cttctttcaggaccatcgtcatagatttntatgcgagttgctatgtccacatcaacc 259
               ||||| ||||| ||||| ||||| || | |||| | |||||||||||||||||||||
Sbjct: 8663889 cttctgtcagggccatcatcatatatgtctatgtgggttgctatgtccacatcaacc 8663945



 Score = 40.1 bits (20), Expect = 5.1
 Identities = 27/30 (90%)
 Strand = Plus / Plus

                                             
Query: 1       gaaataacgcangctnttagcaagaacctg 30
               |||||| |||| ||| ||||||||||||||
Sbjct: 8663042 gaaatagcgcaagctattagcaagaacctg 8663071
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>dbj|AP005249.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBa0087F21
          Length = 187401

 Score =  115 bits (58), Expect = 1e-22
 Identities = 87/97 (89%)
 Strand = Plus / Plus

                                                                          
Query: 96     cctcggtgtcaaattctccagattggacagtgatattgatgtcagcaatgatcttaacta 155
              |||| ||||||||||||||||||||||| ||||| ||||||||| ||||||||||||| |
Sbjct: 175320 cctcagtgtcaaattctccagattggacggtgatgttgatgtcatcaatgatcttaacaa 175379

                                                   
Query: 156    natcaaccaacaaccctggacggtcagctgattccac 192
                ||||||||||| ||||| |||||||||| ||||||
Sbjct: 175380 ggtcaaccaacaaacctggtcggtcagctgtttccac 175416



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 62/73 (84%)
 Strand = Plus / Plus

                                                                          
Query: 26     acctgttgcaaagccttgattaatggcttgccccggtaactgacatggaattttgccttg 85
              ||||| ||||| || ||||| ||||| || ||||  |||||||||||||||||||| || 
Sbjct: 175169 acctgctgcaaggctttgatcaatggtttacccctataactgacatggaattttgcttta 175228

                           
Query: 86     gccagtagcccct 98
              |||||||| ||||
Sbjct: 175229 gccagtaggccct 175241



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 46/53 (86%)
 Strand = Plus / Plus

                                                                   
Query: 266    gtanggggctntagcccaaaagttgcacccatggccaattgactgctagcttc 318
              ||| |||||| | | ||||||||||||||||  |||||||| |||||||||||
Sbjct: 176081 gtagggggctctggaccaaaagttgcacccagagccaattggctgctagcttc 176133



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 49/57 (85%)
 Strand = Plus / Plus

                                                                       
Query: 203    cttctttcaggaccatcgtcatagatttntatgcgagttgctatgtccacatcaacc 259
              ||||| ||||| ||||| ||||| || | |||| | |||||||||||||||||||||
Sbjct: 175800 cttctgtcagggccatcatcatatatgtctatgtgggttgctatgtccacatcaacc 175856



 Score = 40.1 bits (20), Expect = 5.1
 Identities = 27/30 (90%)
 Strand = Plus / Plus

                                            
Query: 1      gaaataacgcangctnttagcaagaacctg 30
              |||||| |||| ||| ||||||||||||||
Sbjct: 174953 gaaatagcgcaagctattagcaagaacctg 174982
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>dbj|AP005478.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
            clone:OSJNBb0070J06
          Length = 142303

 Score =  115 bits (58), Expect = 1e-22
 Identities = 87/97 (89%)
 Strand = Plus / Plus

                                                                        
Query: 96   cctcggtgtcaaattctccagattggacagtgatattgatgtcagcaatgatcttaacta 155
            |||| ||||||||||||||||||||||| ||||| ||||||||| ||||||||||||| |
Sbjct: 6388 cctcagtgtcaaattctccagattggacggtgatgttgatgtcatcaatgatcttaacaa 6447

                                                 
Query: 156  natcaaccaacaaccctggacggtcagctgattccac 192
              ||||||||||| ||||| |||||||||| ||||||
Sbjct: 6448 ggtcaaccaacaaacctggtcggtcagctgtttccac 6484



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 62/73 (84%)
 Strand = Plus / Plus

                                                                        
Query: 26   acctgttgcaaagccttgattaatggcttgccccggtaactgacatggaattttgccttg 85
            ||||| ||||| || ||||| ||||| || ||||  |||||||||||||||||||| || 
Sbjct: 6237 acctgctgcaaggctttgatcaatggtttacccctataactgacatggaattttgcttta 6296

                         
Query: 86   gccagtagcccct 98
            |||||||| ||||
Sbjct: 6297 gccagtaggccct 6309



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 46/53 (86%)
 Strand = Plus / Plus

                                                                 
Query: 266  gtanggggctntagcccaaaagttgcacccatggccaattgactgctagcttc 318
            ||| |||||| | | ||||||||||||||||  |||||||| |||||||||||
Sbjct: 7149 gtagggggctctggaccaaaagttgcacccagagccaattggctgctagcttc 7201



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 49/57 (85%)
 Strand = Plus / Plus

                                                                     
Query: 203  cttctttcaggaccatcgtcatagatttntatgcgagttgctatgtccacatcaacc 259
            ||||| ||||| ||||| ||||| || | |||| | |||||||||||||||||||||
Sbjct: 6868 cttctgtcagggccatcatcatatatgtctatgtgggttgctatgtccacatcaacc 6924



 Score = 40.1 bits (20), Expect = 5.1
 Identities = 27/30 (90%)
 Strand = Plus / Plus

                                          
Query: 1    gaaataacgcangctnttagcaagaacctg 30
            |||||| |||| ||| ||||||||||||||
Sbjct: 6021 gaaatagcgcaagctattagcaagaacctg 6050
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>gb|BT012883.1| Lycopersicon esculentum clone 113986R, mRNA sequence
          Length = 1501

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                           
Query: 68   acatggaattttgccttggccagtagcccctcggtgtcaaattctcc 114
            ||||| ||||||||||| || || || ||||||||||||||||||||
Sbjct: 1252 acatgaaattttgccttagctagcagtccctcggtgtcaaattctcc 1206



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 47/55 (85%)
 Strand = Plus / Minus

                                                                   
Query: 203  cttctttcaggaccatcgtcatagatttntatgcgagttgctatgtccacatcaa 257
            |||| |||||||||||| |||||||  |  ||  |||||||||||||||||||||
Sbjct: 1117 cttcgttcaggaccatcatcatagacatggatatgagttgctatgtccacatcaa 1063
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>ref|NM_101549.3| Arabidopsis thaliana unknown protein AT1G16880 transcript variant
           AT1G16880.1 mRNA, complete cds
          Length = 1188

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 95  ccctcggtgtcaaattctccagatt 119
           ||||||||||| |||||||||||||
Sbjct: 875 ccctcggtgtcgaattctccagatt 851
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>ref|NM_010864.1| Mus musculus myosin Va (Myo5a), mRNA
          Length = 7087

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 131  ttgatgtcagcaatgatctta 151
            |||||||||||||||||||||
Sbjct: 4640 ttgatgtcagcaatgatctta 4620
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>gb|AC110822.6| Mus musculus BAC clone RP24-226H7 from chromosome 9, complete sequence
          Length = 144131

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 131    ttgatgtcagcaatgatctta 151
              |||||||||||||||||||||
Sbjct: 141086 ttgatgtcagcaatgatctta 141066
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>emb|X57377.1|MMDILUTE Mouse dilute myosin heavy chain gene for novel heavy chain with
            unique C-terminal region
          Length = 7087

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 131  ttgatgtcagcaatgatctta 151
            |||||||||||||||||||||
Sbjct: 4640 ttgatgtcagcaatgatctta 4620
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>ref|NM_022178.1| Rattus norvegicus myosin Va (Myo5a), mRNA
          Length = 5620

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 131  ttgatgtcagcaatgatctta 151
            |||||||||||||||||||||
Sbjct: 4565 ttgatgtcagcaatgatctta 4545
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>gb|BT006317.1| Arabidopsis thaliana At1g16880 mRNA, complete cds
          Length = 873

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 95  ccctcggtgtcaaattctccagatt 119
           ||||||||||| |||||||||||||
Sbjct: 743 ccctcggtgtcgaattctccagatt 719
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>dbj|AK002362.1| Mus musculus adult male kidney cDNA, RIKEN full-length enriched
            library, clone:0610009A05 product:myosin Va, full insert
            sequence
          Length = 2641

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 131  ttgatgtcagcaatgatctta 151
            |||||||||||||||||||||
Sbjct: 1188 ttgatgtcagcaatgatctta 1168
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>gb|AF386988.1|AF386988 Arabidopsis thaliana Unknown protein (F6I1.12) mRNA, complete cds
          Length = 1103

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 95  ccctcggtgtcaaattctccagatt 119
           ||||||||||| |||||||||||||
Sbjct: 827 ccctcggtgtcgaattctccagatt 803
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>emb|BX814468.1|CNS0AC2H Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB75ZF08 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1109

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 95  ccctcggtgtcaaattctccagatt 119
           ||||||||||| |||||||||||||
Sbjct: 876 ccctcggtgtcgaattctccagatt 852
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>emb|BX814192.1|CNS0AC6C Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB60ZC04 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1133

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 95  ccctcggtgtcaaattctccagatt 119
           ||||||||||| |||||||||||||
Sbjct: 871 ccctcggtgtcgaattctccagatt 847
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>emb|BX813743.1|CNS0AC5W Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB37ZF06 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1122

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 95  ccctcggtgtcaaattctccagatt 119
           ||||||||||| |||||||||||||
Sbjct: 908 ccctcggtgtcgaattctccagatt 884
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>emb|BX841809.1|CNS09Y1P Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS1ZA11 of Adult vegetative tissue of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1298

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 95   ccctcggtgtcaaattctccagatt 119
            ||||||||||| |||||||||||||
Sbjct: 1062 ccctcggtgtcgaattctccagatt 1038
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>emb|CT033761.14| Mouse DNA sequence from clone RP23-203P12 on chromosome 9, complete
              sequence
          Length = 208050

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 131    ttgatgtcagcaatgatctta 151
              |||||||||||||||||||||
Sbjct: 194998 ttgatgtcagcaatgatctta 194978
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>gb|AC133947.3| Mus musculus BAC clone RP24-189I2 from 9, complete sequence
          Length = 168997

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 131   ttgatgtcagcaatgatctta 151
             |||||||||||||||||||||
Sbjct: 22342 ttgatgtcagcaatgatctta 22322
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>dbj|AB035736.1| Rattus norvegicus Myo5a mRNA for myosin-Va, complete cds
          Length = 5620

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 131  ttgatgtcagcaatgatctta 151
            |||||||||||||||||||||
Sbjct: 4565 ttgatgtcagcaatgatctta 4545
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>ref|NM_180459.1| Arabidopsis thaliana protein binding / ubiquitin-protein ligase/
           zinc ion binding AT5G08139 mRNA, complete cds
          Length = 1520

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 124 agtgatattgatgtcagcaatgat 147
           |||||||||||||| |||||||||
Sbjct: 347 agtgatattgatgttagcaatgat 370
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>gb|AC127028.18| Mus musculus chromosome 18, clone RP23-345J21, complete sequence
          Length = 191473

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 63    aactgacatggaattttgccttgg 86
             |||||||||||| |||||||||||
Sbjct: 73697 aactgacatggagttttgccttgg 73720
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>gb|BT000865.1| Arabidopsis thaliana At5g08140/T22D6_80 mRNA, complete cds
          Length = 1131

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 124 agtgatattgatgtcagcaatgat 147
           |||||||||||||| |||||||||
Sbjct: 205 agtgatattgatgttagcaatgat 228
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>gb|AC117668.9| Mus musculus, clone RP23-367H12, complete sequence
          Length = 221526

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 329    tcangcatgttgttgataattga 351
              ||| |||||||||||||||||||
Sbjct: 197424 tcaagcatgttgttgataattga 197446
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>gb|AC102556.7| Mus musculus chromosome 18, clone RP23-177F9, complete sequence
          Length = 220133

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 35     aaagccttgattaatggctt 54
              ||||||||||||||||||||
Sbjct: 121501 aaagccttgattaatggctt 121520
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>emb|AL357612.1|ATT22D6 Arabidopsis thaliana DNA chromosome 5, BAC clone T22D6 (ESSA project)
          Length = 89988

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 124   agtgatattgatgtcagcaatgat 147
             |||||||||||||| |||||||||
Sbjct: 43360 agtgatattgatgttagcaatgat 43383
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>gb|AC153760.3| Loxodonta africana clone VMRC15-151E6, complete sequence
          Length = 130127

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 19    agcaagaacctgttgcaaagcctt 42
             |||| |||||||||||||||||||
Sbjct: 86311 agcatgaacctgttgcaaagcctt 86334
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>gb|AC091184.6| Homo sapiens chromosome 8, clone RP11-353O11, complete sequence
          Length = 142867

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 105   caaattctccagattggaca 124
             ||||||||||||||||||||
Sbjct: 44695 caaattctccagattggaca 44714
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>gb|AY058122.1| Arabidopsis thaliana AT5g08140/T22D6_80 mRNA, complete cds
          Length = 1472

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 124 agtgatattgatgtcagcaatgat 147
           |||||||||||||| |||||||||
Sbjct: 347 agtgatattgatgttagcaatgat 370
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>dbj|AK221247.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds,
           clone: RAFL24-02-J20
          Length = 1518

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 124 agtgatattgatgtcagcaatgat 147
           |||||||||||||| |||||||||
Sbjct: 327 agtgatattgatgttagcaatgat 350
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>dbj|AK220636.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds,
           clone: RAFL21-55-K19
          Length = 1480

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 124 agtgatattgatgtcagcaatgat 147
           |||||||||||||| |||||||||
Sbjct: 319 agtgatattgatgttagcaatgat 342
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>emb|BX829848.1|CNS0A025 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB40ZE11 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1478

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 124 agtgatattgatgtcagcaatgat 147
           |||||||||||||| |||||||||
Sbjct: 335 agtgatattgatgttagcaatgat 358
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>emb|BX831414.1|CNS09ZD4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS88ZC12 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1448

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 124 agtgatattgatgtcagcaatgat 147
           |||||||||||||| |||||||||
Sbjct: 299 agtgatattgatgttagcaatgat 322
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>gb|AC154703.2| Mus musculus BAC clone RP24-349H1 from chromosome 14, complete sequence
          Length = 154588

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 329    tcangcatgttgttgataattga 351
              ||| |||||||||||||||||||
Sbjct: 104125 tcaagcatgttgttgataattga 104103
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>gb|AC026237.4|AC026237 Arabidopsis thaliana chromosome I BAC F17F16 genomic sequence, complete
             sequence
          Length = 90498

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 96    cctcggtgtcaaattctccagatt 119
             |||||||||| |||||||||||||
Sbjct: 25126 cctcggtgtcgaattctccagatt 25149
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>gb|AC051629.3|AC051629 Arabidopsis thaliana chromosome I BAC F6I1 genomic sequence, complete
             sequence
          Length = 93677

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 96    cctcggtgtcaaattctccagatt 119
             |||||||||| |||||||||||||
Sbjct: 71823 cctcggtgtcgaattctccagatt 71846
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>dbj|AK117658.1| Arabidopsis thaliana At5g08139 mRNA for unknown protein, complete
           cds, clone: RAFL17-31-L11
          Length = 1520

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 124 agtgatattgatgtcagcaatgat 147
           |||||||||||||| |||||||||
Sbjct: 347 agtgatattgatgttagcaatgat 370
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>emb|AL844546.8| Mouse DNA sequence from clone RP23-243I3 on chromosome 2, complete
             sequence
          Length = 170475

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 87    ccagtagcccctcggtgtca 106
             ||||||||||||||||||||
Sbjct: 49896 ccagtagcccctcggtgtca 49877


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,182,767
Number of Sequences: 3902068
Number of extensions: 2182767
Number of successful extensions: 34385
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34292
Number of HSP's gapped (non-prelim): 91
length of query: 380
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 358
effective length of database: 17,147,199,772
effective search space: 6138697518376
effective search space used: 6138697518376
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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