ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal13i17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009272.1| Triticum aestivum clone wlk8.pk0011.e10:fis, full... 422 e-115
2gb|AY105738.1| Zea mays PCO070960 mRNA sequence 107 2e-20
3ref|XM_469653.1| Oryza sativa (japonica cultivar-group), mRNA 88 2e-14
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 88 2e-14
5gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genom... 88 2e-14
6dbj|AK061913.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 2e-14
7dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 88 2e-14
8dbj|AK119226.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 2e-14
9dbj|AK100404.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 2e-14
10dbj|AK060674.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 2e-14
11emb|Z25860.1|FPGHMT2 Flaveria pringlei mRNA for glycine hydroxym... 72 1e-09
12emb|Z25859.1|FPGHMT1 Flaveria pringlei mRNA for glycine hydroxym... 64 3e-07
13emb|Z25863.1|STGHMT S.tuberosum mRNA for glycine hydroxymethyltr... 56 6e-05
14dbj|AP004579.1| Lotus japonicus genomic DNA, chromosome 2, clone... 54 3e-04
15dbj|AP004578.1| Lotus japonicus genomic DNA, chromosome 2, clone... 54 3e-04
16gb|AC164169.8| Mus musculus 6 BAC RP23-413M4 (Roswell Park Cance... 44 0.24
17gb|AC153848.5| Mus musculus 6 BAC RP23-111L15 (Roswell Park Canc... 44 0.24
18ref|NM_119954.2| Arabidopsis thaliana SHM1 (SERINE HYDROXYMETHYL... 42 0.96
19gb|AC113269.13| Mus musculus chromosome 15, clone RP23-372F2, co... 42 0.96
20emb|AL031985.10|HS228H13 Human DNA sequence from clone RP1-228H1... 42 0.96
21emb|AL161592.2|ATCHRIV88 Arabidopsis thaliana DNA chromosome 4, ... 42 0.96
22emb|AL035538.1|ATF20D10 Arabidopsis thaliana DNA chromosome 4, B... 42 0.96
23emb|AJ271726.1|ATH271726 Arabidopsis thaliana mRNA for serine hy... 42 0.96
24gb|AY070726.1| Arabidopsis thaliana AT4g37930/F20D10_50 mRNA, co... 42 0.96
25gb|AY057645.1| Arabidopsis thaliana AT4g37930/F20D10_50 mRNA, co... 42 0.96
26gb|AF428388.1|AF428388 Arabidopsis thaliana AT4g37930/F20D10_50 ... 42 0.96
27gb|AY054254.1| Arabidopsis thaliana AT4g37930/F20D10_50 mRNA, co... 42 0.96
28gb|BT006353.1| Arabidopsis thaliana At4g37930/F20D10_50 gene, co... 42 0.96
29emb|BX828432.1|CNS0A3VV Arabidopsis thaliana Full-length cDNA Co... 42 0.96
30gb|AY089107.1| Arabidopsis thaliana clone 33799 mRNA, complete s... 42 0.96
31gb|AC118627.6| Mus musculus chromosome 15, clone RP24-91E8, comp... 40 3.8
32ref|XM_745127.1| Aspergillus fumigatus Af293 hypothetical protei... 40 3.8
33dbj|AB010698.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 3.8
34gb|AC009294.8|AC009294 Homo sapiens chromosome 11, clone 579_H_1... 40 3.8
35dbj|AP003460.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 3.8 
>gb|BT009272.1| Triticum aestivum clone wlk8.pk0011.e10:fis, full insert mRNA
            sequence
          Length = 1878

 Score =  422 bits (213), Expect = e-115
 Identities = 263/281 (93%), Gaps = 1/281 (0%)
 Strand = Plus / Minus

                                                                        
Query: 10   cttacagtatgtgcctgcaataagaaactattgacaaagttcccatattctgtaaaatgc 69
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1772 cttacagtatgtgcctgcaataagaaactatcgacaaagttcccatattctgtaaaatgc 1713

                                                                        
Query: 70   ttggattccttttacataagatggcgctncatcatggatctattgtttacatggacttgt 129
            |||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||
Sbjct: 1712 ttggattccttttacatatggtggcgcttcatcatggatctattgtttacatggacttgt 1653

                                                                        
Query: 130  cctcagttgtgcttcctgtttgcttcc-ttgctgttgaaacacagcagtgcttagttctt 188
            |||||| |||||||| ||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 1652 cctcagctgtgcttcttgtttgcttcctttgctgttgaaacacagcagttcttagttctt 1593

                                                                        
Query: 189  gtacttcatggtcnntnnctcgaatccgattgttgggaattgntttgcatattcctccac 248
            |||||||||||||     ||||||||| |||||||||||||| || ||||||||||||||
Sbjct: 1592 gtacttcatggtctccttctcgaatccaattgttgggaattgtttcgcatattcctccac 1533

                                                     
Query: 249  atcgtggcgaagctttgcaatttcancttgnatgttgctgt 289
            ||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 1532 atcgtggcgaagctttgcaatttcagcttggatgttgctgt 1492
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>gb|AY105738.1| Zea mays PCO070960 mRNA sequence
          Length = 1476

 Score =  107 bits (54), Expect = 2e-20
 Identities = 89/103 (86%)
 Strand = Plus / Minus

                                                                        
Query: 180  ttagttcttgtacttcatggtcnntnnctcgaatccgattgttgggaattgntttgcata 239
            |||||||||||| |||||||||  |  ||| ||||| |||||||||||||| |||||| |
Sbjct: 1231 ttagttcttgtatttcatggtctctttctcaaatccaattgttgggaattgttttgcaaa 1172

                                                       
Query: 240  ttcctccacatcgtggcgaagctttgcaatttcancttgnatg 282
            |||||| ||||| ||||||||||||||||| ||| |||| |||
Sbjct: 1171 ttcctctacatcatggcgaagctttgcaatctcaacttggatg 1129
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>ref|XM_469653.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2052

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 78/91 (85%)
 Strand = Plus / Minus

                                                                        
Query: 179  cttagttcttgtacttcatggtcnntnnctcgaatccgattgttgggaattgntttgcat 238
            ||||||||||||||||||||||   |  ||| || || ||||| ||||| || |||||||
Sbjct: 1675 cttagttcttgtacttcatggtttctttctcaaacccaattgtggggaactgttttgcat 1616

                                           
Query: 239  attcctccacatcgtggcgaagctttgcaat 269
            ||||||||||||| |||||||| ||||||||
Sbjct: 1615 attcctccacatcatggcgaagttttgcaat 1585



 Score = 44.1 bits (22), Expect = 0.24
 Identities = 72/86 (83%), Gaps = 2/86 (2%)
 Strand = Plus / Minus

                                                                        
Query: 10   cttacagtatgtgcctgcaataagaaactattgacaaagttcccatattctgtaaaatg- 68
            ||||||||| ||| || | ||||||| |||||||||||||| ||| |  |||||||||| 
Sbjct: 1871 cttacagtaggtgtctacgataagaa-ctattgacaaagtttccacacgctgtaaaatgc 1813

                                      
Query: 69   cttggattccttttacataagatggc 94
            |  || | ||||||||||||||||||
Sbjct: 1812 caggggtcccttttacataagatggc 1787
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 78/91 (85%)
 Strand = Plus / Minus

                                                                            
Query: 179      cttagttcttgtacttcatggtcnntnnctcgaatccgattgttgggaattgntttgcat 238
                ||||||||||||||||||||||   |  ||| || || ||||| ||||| || |||||||
Sbjct: 30011320 cttagttcttgtacttcatggtttctttctcaaacccaattgtggggaactgttttgcat 30011261

                                               
Query: 239      attcctccacatcgtggcgaagctttgcaat 269
                ||||||||||||| |||||||| ||||||||
Sbjct: 30011260 attcctccacatcatggcgaagttttgcaat 30011230



 Score = 44.1 bits (22), Expect = 0.24
 Identities = 72/86 (83%), Gaps = 2/86 (2%)
 Strand = Plus / Minus

                                                                            
Query: 10       cttacagtatgtgcctgcaataagaaactattgacaaagttcccatattctgtaaaatgc 69
                ||||||||| ||| || | ||||||| |||||||||||||| ||| |  |||||||||||
Sbjct: 30011752 cttacagtaggtgtctacgataagaa-ctattgacaaagtttccacacgctgtaaaatgc 30011694

                                          
Query: 70       ttggattcc-ttttacataagatggc 94
                  ||  ||| ||||||||||||||||
Sbjct: 30011693 caggggtcccttttacataagatggc 30011668
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>gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genomic sequence, complete
             sequence
          Length = 155106

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 78/91 (85%)
 Strand = Plus / Plus

                                                                         
Query: 179   cttagttcttgtacttcatggtcnntnnctcgaatccgattgttgggaattgntttgcat 238
             ||||||||||||||||||||||   |  ||| || || ||||| ||||| || |||||||
Sbjct: 96431 cttagttcttgtacttcatggtttctttctcaaacccaattgtggggaactgttttgcat 96490

                                            
Query: 239   attcctccacatcgtggcgaagctttgcaat 269
             ||||||||||||| |||||||| ||||||||
Sbjct: 96491 attcctccacatcatggcgaagttttgcaat 96521



 Score = 44.1 bits (22), Expect = 0.24
 Identities = 72/86 (83%), Gaps = 2/86 (2%)
 Strand = Plus / Plus

                                                                         
Query: 10    cttacagtatgtgcctgcaataagaaactattgacaaagttcccatattctgtaaaatg- 68
             ||||||||| ||| || | ||||||| |||||||||||||| ||| |  |||||||||| 
Sbjct: 95999 cttacagtaggtgtctacgataagaa-ctattgacaaagtttccacacgctgtaaaatgc 96057

                                       
Query: 69    cttggattccttttacataagatggc 94
             |  || | ||||||||||||||||||
Sbjct: 96058 caggggtcccttttacataagatggc 96083
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>dbj|AK061913.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-A08, full
            insert sequence
          Length = 1402

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 78/91 (85%)
 Strand = Plus / Minus

                                                                        
Query: 179  cttagttcttgtacttcatggtcnntnnctcgaatccgattgttgggaattgntttgcat 238
            ||||||||||||||||||||||   |  ||| || || ||||| ||||| || |||||||
Sbjct: 1128 cttagttcttgtacttcatggtttctttctcaaacccaattgtggggaactgttttgcat 1069

                                           
Query: 239  attcctccacatcgtggcgaagctttgcaat 269
            ||||||||||||| |||||||| ||||||||
Sbjct: 1068 attcctccacatcatggcgaagttttgcaat 1038



 Score = 44.1 bits (22), Expect = 0.24
 Identities = 72/86 (83%), Gaps = 2/86 (2%)
 Strand = Plus / Minus

                                                                        
Query: 10   cttacagtatgtgcctgcaataagaaactattgacaaagttcccatattctgtaaaatgc 69
            ||||||||| ||| || | ||||||| |||||||||||||| ||| |  |||||||||||
Sbjct: 1324 cttacagtaggtgtctacgataagaa-ctattgacaaagtttccacacgctgtaaaatgc 1266

                                      
Query: 70   ttggattcc-ttttacataagatggc 94
              ||  ||| ||||||||||||||||
Sbjct: 1265 caggggtcccttttacataagatggc 1240
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 78/91 (85%)
 Strand = Plus / Minus

                                                                            
Query: 179      cttagttcttgtacttcatggtcnntnnctcgaatccgattgttgggaattgntttgcat 238
                ||||||||||||||||||||||   |  ||| || || ||||| ||||| || |||||||
Sbjct: 30102742 cttagttcttgtacttcatggtttctttctcaaacccaattgtggggaactgttttgcat 30102683

                                               
Query: 239      attcctccacatcgtggcgaagctttgcaat 269
                ||||||||||||| |||||||| ||||||||
Sbjct: 30102682 attcctccacatcatggcgaagttttgcaat 30102652



 Score = 44.1 bits (22), Expect = 0.24
 Identities = 72/86 (83%), Gaps = 2/86 (2%)
 Strand = Plus / Minus

                                                                            
Query: 10       cttacagtatgtgcctgcaataagaaactattgacaaagttcccatattctgtaaaatg- 68
                ||||||||| ||| || | ||||||| |||||||||||||| ||| |  |||||||||| 
Sbjct: 30103174 cttacagtaggtgtctacgataagaa-ctattgacaaagtttccacacgctgtaaaatgc 30103116

                                          
Query: 69       cttggattccttttacataagatggc 94
                |  || | ||||||||||||||||||
Sbjct: 30103115 caggggtcccttttacataagatggc 30103090
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>dbj|AK119226.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-H12, full
            insert sequence
          Length = 1923

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 78/91 (85%)
 Strand = Plus / Minus

                                                                        
Query: 179  cttagttcttgtacttcatggtcnntnnctcgaatccgattgttgggaattgntttgcat 238
            ||||||||||||||||||||||   |  ||| || || ||||| ||||| || |||||||
Sbjct: 1598 cttagttcttgtacttcatggtttctttctcaaacccaattgtggggaactgttttgcat 1539

                                           
Query: 239  attcctccacatcgtggcgaagctttgcaat 269
            ||||||||||||| |||||||| ||||||||
Sbjct: 1538 attcctccacatcatggcgaagttttgcaat 1508



 Score = 44.1 bits (22), Expect = 0.24
 Identities = 72/86 (83%), Gaps = 2/86 (2%)
 Strand = Plus / Minus

                                                                        
Query: 10   cttacagtatgtgcctgcaataagaaactattgacaaagttcccatattctgtaaaatg- 68
            ||||||||| ||| || | ||||||| |||||||||||||| ||| |  |||||||||| 
Sbjct: 1794 cttacagtaggtgtctacgataagaa-ctattgacaaagtttccacacgctgtaaaatgc 1736

                                      
Query: 69   cttggattccttttacataagatggc 94
            |  || | ||||||||||||||||||
Sbjct: 1735 caggggtcccttttacataagatggc 1710
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>dbj|AK100404.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023086P20, full
            insert sequence
          Length = 1976

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 78/91 (85%)
 Strand = Plus / Minus

                                                                        
Query: 179  cttagttcttgtacttcatggtcnntnnctcgaatccgattgttgggaattgntttgcat 238
            ||||||||||||||||||||||   |  ||| || || ||||| ||||| || |||||||
Sbjct: 1599 cttagttcttgtacttcatggtttctttctcaaacccaattgtggggaactgttttgcat 1540

                                           
Query: 239  attcctccacatcgtggcgaagctttgcaat 269
            ||||||||||||| |||||||| ||||||||
Sbjct: 1539 attcctccacatcatggcgaagttttgcaat 1509



 Score = 44.1 bits (22), Expect = 0.24
 Identities = 72/86 (83%), Gaps = 2/86 (2%)
 Strand = Plus / Minus

                                                                        
Query: 10   cttacagtatgtgcctgcaataagaaactattgacaaagttcccatattctgtaaaatg- 68
            ||||||||| ||| || | ||||||| |||||||||||||| ||| |  |||||||||| 
Sbjct: 1795 cttacagtaggtgtctacgataagaa-ctattgacaaagtttccacacgctgtaaaatgc 1737

                                      
Query: 69   cttggattccttttacataagatggc 94
            |  || | ||||||||||||||||||
Sbjct: 1736 caggggtcccttttacataagatggc 1711
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>dbj|AK060674.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-A01, full
            insert sequence
          Length = 1844

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 78/91 (85%)
 Strand = Plus / Minus

                                                                        
Query: 179  cttagttcttgtacttcatggtcnntnnctcgaatccgattgttgggaattgntttgcat 238
            ||||||||||||||||||||||   |  ||| || || ||||| ||||| || |||||||
Sbjct: 1591 cttagttcttgtacttcatggtttctttctcaaacccaattgtggggaactgttttgcat 1532

                                           
Query: 239  attcctccacatcgtggcgaagctttgcaat 269
            ||||||||||||| |||||||| ||||||||
Sbjct: 1531 attcctccacatcatggcgaagttttgcaat 1501



 Score = 44.1 bits (22), Expect = 0.24
 Identities = 72/86 (83%), Gaps = 2/86 (2%)
 Strand = Plus / Minus

                                                                        
Query: 10   cttacagtatgtgcctgcaataagaaactattgacaaagttcccatattctgtaaaatg- 68
            ||||||||| ||| || | ||||||| |||||||||||||| ||| |  |||||||||| 
Sbjct: 1787 cttacagtaggtgtctacgataagaa-ctattgacaaagtttccacacgctgtaaaatgc 1729

                                      
Query: 69   cttggattccttttacataagatggc 94
            |  || | ||||||||||||||||||
Sbjct: 1728 caggggtcccttttacataagatggc 1703
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>emb|Z25860.1|FPGHMT2 Flaveria pringlei mRNA for glycine hydroxymethyltransferase
          Length = 1779

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                       
Query: 214  ccgattgttgggaattgntttgcatattcctccacatcgtggcgaagctttgcaatttc 272
            ||||||||||||||||| || ||||| |||||||| |||||||| ||||||| ||||||
Sbjct: 1544 ccgattgttgggaattgtttggcatactcctccacgtcgtggcgtagctttgaaatttc 1486
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>emb|Z25859.1|FPGHMT1 Flaveria pringlei mRNA for glycine hydroxymethyltransferase
          Length = 1746

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 72/87 (82%)
 Strand = Plus / Minus

                                                                        
Query: 179  cttagttcttgtacttcatggtcnntnnctcgaatccgattgttgggaattgntttgcat 238
            ||||||| ||||| ||||||||   |  ||| ||||||||||| |||||||| || || |
Sbjct: 1588 cttagtttttgtatttcatggtttctttctcaaatccgattgtcgggaattgtttcgcgt 1529

                                       
Query: 239  attcctccacatcgtggcgaagctttg 265
            |||||||||| || ||||| |||||||
Sbjct: 1528 attcctccacgtcatggcgtagctttg 1502
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>emb|Z25863.1|STGHMT S.tuberosum mRNA for glycine hydroxymethyltransferase
          Length = 1745

 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 77/95 (81%)
 Strand = Plus / Minus

                                                                        
Query: 179  cttagttcttgtacttcatggtcnntnnctcgaatccgattgttgggaattgntttgcat 238
            ||||||| ||||||||||||||   |  ||| || || ||||| ||||| || || ||||
Sbjct: 1563 cttagtttttgtacttcatggtttctttctcaaacccaattgtagggaactgcttagcat 1504

                                               
Query: 239  attcctccacatcgtggcgaagctttgcaatttca 273
            | ||||||||||| || || || ||||||||||||
Sbjct: 1503 actcctccacatcatgacggagttttgcaatttca 1469
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>dbj|AP004579.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT11E23, TM0557
          Length = 87695

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                               
Query: 235  gcatattcctccacatcgtggcgaagctttgcaat 269
            ||||| ||||| |||||||||||||||||||||||
Sbjct: 7531 gcatactcctcaacatcgtggcgaagctttgcaat 7497
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>dbj|AP004578.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT17H01, TM0541,
             complete sequence
          Length = 110985

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                                
Query: 235   gcatattcctccacatcgtggcgaagctttgcaat 269
             ||||| ||||| |||||||||||||||||||||||
Sbjct: 95134 gcatactcctcaacatcgtggcgaagctttgcaat 95100
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>gb|AC164169.8| Mus musculus 6 BAC RP23-413M4 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 209149

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 136    ttgtgcttcctgtttgcttcct 157
              ||||||||||||||||||||||
Sbjct: 194735 ttgtgcttcctgtttgcttcct 194756
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>gb|AC153848.5| Mus musculus 6 BAC RP23-111L15 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 187830

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 136   ttgtgcttcctgtttgcttcct 157
             ||||||||||||||||||||||
Sbjct: 54206 ttgtgcttcctgtttgcttcct 54227
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>ref|NM_119954.2| Arabidopsis thaliana SHM1 (SERINE HYDROXYMETHYLTRANSFERASE 1);
            glycine hydroxymethyltransferase AT4G37930 (SHM1) mRNA,
            complete cds
          Length = 1822

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 180  ttagttcttgtacttcatggt 200
            |||||||||||||||||||||
Sbjct: 1677 ttagttcttgtacttcatggt 1657
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>gb|AC113269.13| Mus musculus chromosome 15, clone RP23-372F2, complete sequence
          Length = 202155

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 139   tgcttcctgtttgcttccttgctgt 163
             |||||||||||||||||| ||||||
Sbjct: 70853 tgcttcctgtttgcttccgtgctgt 70877
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>emb|AL031985.10|HS228H13 Human DNA sequence from clone RP1-228H13 on chromosome 1p34.1-35.3
              Contains the gene for a novel protein, a ribosomal protein
              L21 (RPL21), a ribosomal protein L10a (RPL10A) and the gene
              for a novel zinc finger protein, complete sequence
          Length = 139737

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 137    tgtgcttcctgtttgcttcct 157
              |||||||||||||||||||||
Sbjct: 105621 tgtgcttcctgtttgcttcct 105601
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>emb|AL161592.2|ATCHRIV88 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 88
          Length = 198493

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 180    ttagttcttgtacttcatggt 200
              |||||||||||||||||||||
Sbjct: 134324 ttagttcttgtacttcatggt 134344
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>emb|AL035538.1|ATF20D10 Arabidopsis thaliana DNA chromosome 4, BAC clone  F20D10 (ESSA project)
          Length = 147215

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 180   ttagttcttgtacttcatggt 200
             |||||||||||||||||||||
Sbjct: 19909 ttagttcttgtacttcatggt 19929
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>emb|AJ271726.1|ATH271726 Arabidopsis thaliana mRNA for serine hydroxymethyl transferase (shm1
            gene)
          Length = 1797

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 180  ttagttcttgtacttcatggt 200
            |||||||||||||||||||||
Sbjct: 1653 ttagttcttgtacttcatggt 1633
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>gb|AY070726.1| Arabidopsis thaliana AT4g37930/F20D10_50 mRNA, complete cds
          Length = 1775

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 180  ttagttcttgtacttcatggt 200
            |||||||||||||||||||||
Sbjct: 1661 ttagttcttgtacttcatggt 1641
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>gb|AY057645.1| Arabidopsis thaliana AT4g37930/F20D10_50 mRNA, complete cds
          Length = 1716

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 180  ttagttcttgtacttcatggt 200
            |||||||||||||||||||||
Sbjct: 1607 ttagttcttgtacttcatggt 1587
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>gb|AF428388.1|AF428388 Arabidopsis thaliana AT4g37930/F20D10_50 mRNA, complete cds
          Length = 1730

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 180  ttagttcttgtacttcatggt 200
            |||||||||||||||||||||
Sbjct: 1608 ttagttcttgtacttcatggt 1588
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>gb|AY054254.1| Arabidopsis thaliana AT4g37930/F20D10_50 mRNA, complete cds
          Length = 1770

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 180  ttagttcttgtacttcatggt 200
            |||||||||||||||||||||
Sbjct: 1661 ttagttcttgtacttcatggt 1641
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>gb|BT006353.1| Arabidopsis thaliana At4g37930/F20D10_50 gene, complete cds
          Length = 1554

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 180  ttagttcttgtacttcatggt 200
            |||||||||||||||||||||
Sbjct: 1554 ttagttcttgtacttcatggt 1534
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>emb|BX828432.1|CNS0A3VV Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH89ZH08 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1771

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 180  ttagttcttgtacttcatggt 200
            |||||||||||||||||||||
Sbjct: 1650 ttagttcttgtacttcatggt 1630
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>gb|AY089107.1| Arabidopsis thaliana clone 33799 mRNA, complete sequence
          Length = 1725

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 180  ttagttcttgtacttcatggt 200
            |||||||||||||||||||||
Sbjct: 1616 ttagttcttgtacttcatggt 1596
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>gb|AC118627.6| Mus musculus chromosome 15, clone RP24-91E8, complete sequence
          Length = 256158

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 145   ctgtttgcttccttgctgtt 164
             ||||||||||||||||||||
Sbjct: 85155 ctgtttgcttccttgctgtt 85174
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>ref|XM_745127.1| Aspergillus fumigatus Af293 hypothetical protein (Afu1g04710)
           partial mRNA
          Length = 1263

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 151 gcttccttgctgttgaaacacagc 174
           |||||||||| |||||||||||||
Sbjct: 35  gcttccttgcagttgaaacacagc 12
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>dbj|AB010698.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MPL12
          Length = 87434

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 21    tgcctgcaataagaaactat 40
             ||||||||||||||||||||
Sbjct: 54636 tgcctgcaataagaaactat 54617
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>gb|AC009294.8|AC009294 Homo sapiens chromosome 11, clone 579_H_17, complete sequence
          Length = 211316

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 31     aagaaactattgacaaagtt 50
              ||||||||||||||||||||
Sbjct: 122669 aagaaactattgacaaagtt 122650
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>dbj|AP003460.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-285P16, complete
              sequence
          Length = 171738

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 31     aagaaactattgacaaagtt 50
              ||||||||||||||||||||
Sbjct: 164989 aagaaactattgacaaagtt 165008


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,396,437
Number of Sequences: 3902068
Number of extensions: 2396437
Number of successful extensions: 71633
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71539
Number of HSP's gapped (non-prelim): 76
length of query: 289
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 267
effective length of database: 17,147,199,772
effective search space: 4578302339124
effective search space used: 4578302339124
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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