ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal13i12 |
|---|---|
| Clone Library Name | barley_pub |
>PMA1_WHEAT (P83970) Plasma membrane ATPase (EC 3.6.3.6) (Proton pump)| Length = 951 Score = 63.9 bits (154), Expect = 1e-10 Identities = 31/32 (96%), Positives = 31/32 (96%) Frame = -3 Query: 148 RLRELNTLKGHVXSVVKLKGLDIDTINQNYTV 53 RLRELNTLKGHV SVVKLKGLDIDTINQNYTV Sbjct: 920 RLRELNTLKGHVESVVKLKGLDIDTINQNYTV 951
>PMA5_ARATH (Q9SJB3) ATPase 5, plasma membrane-type (EC 3.6.3.6) (Proton pump 5)| Length = 948 Score = 58.9 bits (141), Expect = 4e-09 Identities = 28/32 (87%), Positives = 30/32 (93%) Frame = -3 Query: 148 RLRELNTLKGHVXSVVKLKGLDIDTINQNYTV 53 RLRE+NTLKGHV SVVKLKGLDIDTI Q+YTV Sbjct: 917 RLREINTLKGHVESVVKLKGLDIDTIQQHYTV 948
>PMA8_ARATH (Q9M2A0) ATPase 8, plasma membrane-type (EC 3.6.3.6) (Proton pump 8)| Length = 948 Score = 57.8 bits (138), Expect = 8e-09 Identities = 28/32 (87%), Positives = 30/32 (93%) Frame = -3 Query: 148 RLRELNTLKGHVXSVVKLKGLDIDTINQNYTV 53 RLREL+TLKGHV SVVKLKGLDIDTI Q+YTV Sbjct: 917 RLRELHTLKGHVESVVKLKGLDIDTIQQHYTV 948
>PMA1_LYCES (P22180) Plasma membrane ATPase 1 (EC 3.6.3.6) (Proton pump 1)| Length = 956 Score = 56.2 bits (134), Expect = 2e-08 Identities = 27/32 (84%), Positives = 30/32 (93%) Frame = -3 Query: 148 RLRELNTLKGHVXSVVKLKGLDIDTINQNYTV 53 RLREL+TLKGHV SVVKLKGLDI+TI Q+YTV Sbjct: 925 RLRELHTLKGHVESVVKLKGLDIETIQQSYTV 956
>PMA6_ARATH (Q9SH76) ATPase 6, plasma membrane-type (EC 3.6.3.6) (Proton pump 6)| Length = 949 Score = 56.2 bits (134), Expect = 2e-08 Identities = 26/32 (81%), Positives = 30/32 (93%) Frame = -3 Query: 148 RLRELNTLKGHVXSVVKLKGLDIDTINQNYTV 53 RLRE++TLKGHV SVVKLKGLDID +NQ+YTV Sbjct: 918 RLREVHTLKGHVESVVKLKGLDIDNLNQHYTV 949
>PMA4_NICPL (Q03194) Plasma membrane ATPase 4 (EC 3.6.3.6) (Proton pump 4)| Length = 952 Score = 56.2 bits (134), Expect = 2e-08 Identities = 27/32 (84%), Positives = 30/32 (93%) Frame = -3 Query: 148 RLRELNTLKGHVXSVVKLKGLDIDTINQNYTV 53 RLREL+TLKGHV SVVKLKGLDI+TI Q+YTV Sbjct: 921 RLRELHTLKGHVESVVKLKGLDIETIQQHYTV 952
>PMA3_NICPL (Q08436) Plasma membrane ATPase 3 (EC 3.6.3.6) (Proton pump 3)| Length = 956 Score = 55.1 bits (131), Expect = 5e-08 Identities = 27/32 (84%), Positives = 29/32 (90%) Frame = -3 Query: 148 RLRELNTLKGHVXSVVKLKGLDIDTINQNYTV 53 RLREL+TLKGHV SVVKLKGLDI+TI Q YTV Sbjct: 925 RLRELHTLKGHVESVVKLKGLDIETIQQAYTV 956
>PMA1_NICPL (Q08435) Plasma membrane ATPase 1 (EC 3.6.3.6) (Proton pump 1)| Length = 957 Score = 55.1 bits (131), Expect = 5e-08 Identities = 27/32 (84%), Positives = 29/32 (90%) Frame = -3 Query: 148 RLRELNTLKGHVXSVVKLKGLDIDTINQNYTV 53 RLREL+TLKGHV SVVKLKGLDI+TI Q YTV Sbjct: 926 RLRELHTLKGHVESVVKLKGLDIETIQQAYTV 957
>PMA11_ARATH (Q9LV11) ATPase 11, plasma membrane-type (EC 3.6.3.6) (Proton pump| 11) Length = 956 Score = 53.9 bits (128), Expect = 1e-07 Identities = 26/32 (81%), Positives = 29/32 (90%) Frame = -3 Query: 148 RLRELNTLKGHVXSVVKLKGLDIDTINQNYTV 53 RLREL+TLKGHV SVV+LKGLDI+TI Q YTV Sbjct: 925 RLRELHTLKGHVESVVRLKGLDIETIQQAYTV 956
>PMA2_LYCES (P23980) Plasma membrane ATPase 2 (EC 3.6.3.6) (Proton pump 2)| (Fragment) Length = 704 Score = 53.9 bits (128), Expect = 1e-07 Identities = 26/32 (81%), Positives = 29/32 (90%) Frame = -3 Query: 148 RLRELNTLKGHVXSVVKLKGLDIDTINQNYTV 53 R REL+TLKGHV SVVKLKGLDI+TI Q+YTV Sbjct: 673 RQRELHTLKGHVESVVKLKGLDIETIQQSYTV 704
>PMA4_ARATH (Q9SU58) ATPase 4, plasma membrane-type (EC 3.6.3.6) (Proton pump 4)| Length = 960 Score = 53.9 bits (128), Expect = 1e-07 Identities = 26/32 (81%), Positives = 29/32 (90%) Frame = -3 Query: 148 RLRELNTLKGHVXSVVKLKGLDIDTINQNYTV 53 RLREL+TLKGHV SVV+LKGLDI+TI Q YTV Sbjct: 929 RLRELHTLKGHVESVVRLKGLDIETIQQAYTV 960
>PMA1_ARATH (P20649) ATPase 1, plasma membrane-type (EC 3.6.3.6) (Proton pump 1)| Length = 948 Score = 52.4 bits (124), Expect = 3e-07 Identities = 25/32 (78%), Positives = 27/32 (84%) Frame = -3 Query: 148 RLRELNTLKGHVXSVVKLKGLDIDTINQNYTV 53 RLREL+TLKGHV SV KLKGLDIDT +YTV Sbjct: 917 RLRELHTLKGHVESVAKLKGLDIDTAGHHYTV 948
>PMA9_ARATH (Q42556) ATPase 9, plasma membrane-type (EC 3.6.3.6) (Proton pump 9)| Length = 954 Score = 48.5 bits (114), Expect = 5e-06 Identities = 23/32 (71%), Positives = 27/32 (84%) Frame = -3 Query: 148 RLRELNTLKGHVXSVVKLKGLDIDTINQNYTV 53 RLRE +TLKGHV SVVK KGLDI+ I Q+YT+ Sbjct: 923 RLRERHTLKGHVESVVKQKGLDIEAIQQHYTL 954
>PMA3_ARATH (P20431) ATPase 3, plasma membrane-type (EC 3.6.3.6) (Proton pump 3)| Length = 948 Score = 47.8 bits (112), Expect = 8e-06 Identities = 25/32 (78%), Positives = 28/32 (87%) Frame = -3 Query: 148 RLRELNTLKGHVXSVVKLKGLDIDTINQNYTV 53 RLREL+TLKGHV SVVKLKGLDI+T +YTV Sbjct: 918 RLRELHTLKGHVESVVKLKGLDIETAG-HYTV 948
>PMA2_ARATH (P19456) ATPase 2, plasma membrane-type (EC 3.6.3.6) (Proton pump 2)| Length = 947 Score = 47.4 bits (111), Expect = 1e-05 Identities = 25/32 (78%), Positives = 28/32 (87%) Frame = -3 Query: 148 RLRELNTLKGHVXSVVKLKGLDIDTINQNYTV 53 RLREL+TLKGHV SVVKLKGLDI+T +YTV Sbjct: 917 RLRELHTLKGHVESVVKLKGLDIET-PSHYTV 947
>PMA7_ARATH (Q9LY32) ATPase 7, plasma membrane-type (EC 3.6.3.6) (Proton pump 7)| Length = 961 Score = 38.1 bits (87), Expect = 0.007 Identities = 19/33 (57%), Positives = 23/33 (69%), Gaps = 1/33 (3%) Frame = -3 Query: 148 RLRELNTLKGHVXSVVKLKGLDIDTIN-QNYTV 53 R+REL TLKG V S KLKG D++ N NYT+ Sbjct: 929 RMRELQTLKGKVESAAKLKGYDLEDPNSNNYTI 961
>MRP2_RAT (Q63120) Canalicular multispecific organic anion transporter 1| (ATP-binding cassette sub-family C member 2) (Multidrug resistance-associated protein 2) (Canalicular multidrug resistance protein) Length = 1541 Score = 28.1 bits (61), Expect = 6.9 Identities = 10/26 (38%), Positives = 18/26 (69%) Frame = +2 Query: 26 CLVQCPNSSHGVVLVDGVDVKALELH 103 CL + S+ G +++DG+DV ++ LH Sbjct: 1342 CLFRILESAGGQIIIDGIDVASIGLH 1367
>MRP2_MOUSE (Q8VI47) Canalicular multispecific organic anion transporter 1| (ATP-binding cassette sub-family C member 2) Length = 1543 Score = 27.7 bits (60), Expect = 9.0 Identities = 9/26 (34%), Positives = 18/26 (69%) Frame = +2 Query: 26 CLVQCPNSSHGVVLVDGVDVKALELH 103 CL + S+ G +++DG+D+ ++ LH Sbjct: 1344 CLFRILESAGGQIIIDGIDIASIGLH 1369 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 21,376,351 Number of Sequences: 219361 Number of extensions: 281824 Number of successful extensions: 880 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 876 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 880 length of database: 80,573,946 effective HSP length: 26 effective length of database: 74,870,560 effective search space used: 1796893440 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
