ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal13i06 |
|---|---|
| Clone Library Name | barley_pub |
>KRA45_HUMAN (Q9BYR2) Keratin-associated protein 4-5 (Keratin-associated protein| 4.5) (Ultrahigh sulfur keratin-associated protein 4.5) Length = 186 Score = 36.2 bits (82), Expect = 0.020 Identities = 21/70 (30%), Positives = 25/70 (35%), Gaps = 3/70 (4%) Frame = -1 Query: 351 CXGXCRRVLCI*SXXACCSALHKRANVDTFXCWCPSSCCILFCV---CWISSWYNTXRCA 181 C C R C +CC R C CP SCC+ C C S C Sbjct: 71 CESSCCRPCCC--RPSCCQTTCCRTTCCRTTCCCP-SCCVSSCCRPQCCQSVCCQPTCCR 127 Query: 180 TGFVVLSCCH 151 + + SCCH Sbjct: 128 PSYCISSCCH 137 Score = 28.5 bits (62), Expect = 4.2 Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 2/63 (3%) Frame = -1 Query: 306 ACCSALHKRANVDTFXCWCPSSCCILFC--VCWISSWYNTXRCATGFVVLSCCHVIALLX 133 +CC ++ + C CPS C C C S C + +CCH + Sbjct: 4 SCCGSVSSEQSCGLENCCCPSCCQTTCCRTTCCRPSCCKPQCCQSVCYQPTCCHPSCCIS 63 Query: 132 PPC 124 C Sbjct: 64 SCC 66
>KR413_HUMAN (Q9BYU7) Keratin-associated protein 4-13 (Keratin-associated| protein 4.13) (Ultrahigh sulfur keratin-associated protein 4.13) Length = 106 Score = 32.7 bits (73), Expect = 0.22 Identities = 21/68 (30%), Positives = 24/68 (35%), Gaps = 2/68 (2%) Frame = -1 Query: 351 CXGXCRRVLCI*SXXACCSALHKRANVDTFXCWCPSSCCILFCV--CWISSWYNTXRCAT 178 C C R C +CC R C P+ CC +CV C T RC T Sbjct: 26 CQTTCCRTTCC--RPSCCRPSCCRPQCCQSVCCQPTCCCPSYCVSSCCRPQCCQTTRCRT 83 Query: 177 GFVVLSCC 154 SCC Sbjct: 84 TCCRPSCC 91
>CEMA_ARATH (P56783) Chloroplast envelope membrane protein| Length = 229 Score = 32.3 bits (72), Expect = 0.29 Identities = 12/29 (41%), Positives = 16/29 (55%) Frame = -1 Query: 264 FXCWCPSSCCILFCVCWISSWYNTXRCAT 178 F W S CC WI++W+NT +C T Sbjct: 18 FLPWLISLCCNKSLKTWITNWWNTRQCET 46
>NOTC1_HUMAN (P46531) Neurogenic locus notch homolog protein 1 precursor (Notch 1)| (hN1) (Translocation-associated notch protein TAN-1) [Contains: Notch 1 extracellular truncation; Notch 1 intracellular domain] Length = 2556 Score = 31.2 bits (69), Expect = 0.65 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 5/62 (8%) Frame = -1 Query: 273 VDTFXCWCPSSCCILFCV-----CWISSWYNTXRCATGFVVLSCCHVIALLXPPCFSRRY 109 VD++ C CP+ + C C SS +N C G +C L PP F+ Y Sbjct: 965 VDSYTCTCPAGFSGIHCENNTPDCTESSCFNGGTCVDGINSFTC------LCPPGFTGSY 1018 Query: 108 AQ 103 Q Sbjct: 1019 CQ 1020
>PPID_MOUSE (Q9CR16) 40 kDa peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8)| (PPIase) (Rotamase) (Cyclophilin-40) (CYP-40) Length = 369 Score = 30.4 bits (67), Expect = 1.1 Identities = 14/26 (53%), Positives = 17/26 (65%) Frame = +1 Query: 73 VNYNGEEPXLLCISS*EAGRXKEGDD 150 V NGE+P LC+ + E G KEGDD Sbjct: 164 VEVNGEKPAKLCVIA-ECGELKEGDD 188
>KR415_HUMAN (Q9BYQ5) Keratin-associated protein 4-15 (Keratin-associated| protein 4.15) (Ultrahigh sulfur keratin-associated protein 4.15) (Fragment) Length = 193 Score = 29.3 bits (64), Expect = 2.5 Identities = 24/94 (25%), Positives = 27/94 (28%), Gaps = 18/94 (19%) Frame = -1 Query: 351 CXGXCRRVLCI*SXXACCSALHKRANVDTFXCWCPSSCCILFCV---------------- 220 C C R C S CC R + C C SCC+ C Sbjct: 73 CVSSCCRPQCCQS--VCCQPTCCRPSCSISSC-CRPSCCVSRCCRSQCCQSVCCQPTCCR 129 Query: 219 --CWISSWYNTXRCATGFVVLSCCHVIALLXPPC 124 C ISS C + CC L P C Sbjct: 130 PSCCISSCCRPSCCESSCCRPCCCRPCCCLRPVC 163
>MKRN2_SERQU (Q9DD48) Makorin-2 (Zinc finger protein YGHLC3HC4)| Length = 423 Score = 29.3 bits (64), Expect = 2.5 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%) Frame = -1 Query: 303 CCSALHKRANVDTFXCWCPSSCCILFCVCWISSWYNTXRCATGFVVLSC--CHVIA 142 C + ++AN SSCC FC+ I W T R + ++ SC C V++ Sbjct: 238 CMEVVVQKANPSDRRFGILSSCCHTFCLACIRKWRCT-RTFSNTIIKSCPECRVVS 292
>PPID_RAT (Q6DGG0) 40 kDa peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8)| (PPIase) (Rotamase) (Cyclophilin-40) (CYP-40) Length = 369 Score = 28.9 bits (63), Expect = 3.2 Identities = 13/26 (50%), Positives = 17/26 (65%) Frame = +1 Query: 73 VNYNGEEPXLLCISS*EAGRXKEGDD 150 V NGE+P LC+ + E G KEGD+ Sbjct: 164 VEVNGEKPAKLCVIA-ECGELKEGDE 188
>SET4_YEAST (P42948) SET domain protein 4| Length = 560 Score = 28.5 bits (62), Expect = 4.2 Identities = 8/24 (33%), Positives = 14/24 (58%) Frame = +3 Query: 267 YPHWPFYVTPNNRXXMIKCIKRAC 338 +PHWP Y+ + + I+R+C Sbjct: 407 HPHWPLYIDSRETGGLTRYIRRSC 430
>YXED_BACSU (P54943) Hypothetical protein yxeD| Length = 117 Score = 28.1 bits (61), Expect = 5.5 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 3/40 (7%) Frame = +2 Query: 203 QLLIQHTQXRIQQLEG---HQQXNVSTLALLCNAEQQAXH 313 Q LIQ TQ QQ +Q N+ L + N EQQA H Sbjct: 19 QQLIQQTQQSSQQYRQMLHQEQQNIQMLQEILNHEQQAAH 58
>NOTC1_BRARE (P46530) Neurogenic locus notch homolog protein 1 precursor| Length = 2437 Score = 28.1 bits (61), Expect = 5.5 Identities = 13/40 (32%), Positives = 18/40 (45%) Frame = -1 Query: 276 NVDTFXCWCPSSCCILFCVCWISSWYNTXRCATGFVVLSC 157 N + WC SS C CW T +CA+G+ + C Sbjct: 1053 NCQSLVRWCDSSPCKNGGSCWQQGASFTCQCASGWTGIYC 1092
>KR10B_HUMAN (P60412) Keratin-associated protein 10-11 (Keratin-associated| protein 10.11) (High sulfur keratin-associated protein 10.11) (Keratin-associated protein 18-11) (Keratin-associated protein 18.11) Length = 298 Score = 28.1 bits (61), Expect = 5.5 Identities = 13/43 (30%), Positives = 18/43 (41%) Frame = -1 Query: 351 CXGXCRRVLCI*SXXACCSALHKRANVDTFXCWCPSSCCILFC 223 C CR C+ +CC+ + C CP+SC L C Sbjct: 241 CHPVCRSTCCV-PVSSCCAPTSSCQS----SCCCPASCVSLLC 278
>KRA44_HUMAN (Q9BYR3) Keratin-associated protein 4-4 (Keratin-associated protein| 4.4) (Ultrahigh sulfur keratin-associated protein 4.4) Length = 166 Score = 28.1 bits (61), Expect = 5.5 Identities = 19/68 (27%), Positives = 22/68 (32%), Gaps = 2/68 (2%) Frame = -1 Query: 351 CXGXCRRVLCI*SXXACCSALHKRANVDTFXCWCPSSCCILFCV--CWISSWYNTXRCAT 178 C C + C CC R C P+ CC +CV C T C T Sbjct: 86 CRPQCCQTTCC--RTTCCRPSCCRPQCCQSVCCQPTCCCPSYCVSSCCRPQCCQTTCCRT 143 Query: 177 GFVVLSCC 154 SCC Sbjct: 144 TCCRPSCC 151 Score = 28.1 bits (61), Expect = 5.5 Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 7/68 (10%) Frame = -1 Query: 306 ACCSALHKRANVDTFXC----WCPSSCCILFCV---CWISSWYNTXRCATGFVVLSCCHV 148 +CC ++ C +C ++CC C C +SS C T +CCH Sbjct: 4 SCCGSVCSDQGCGLENCCRPSYCQTTCCRTTCCRPSCCVSSCCRPQCCQTTCCRTTCCHP 63 Query: 147 IALLXPPC 124 + C Sbjct: 64 SCCVSSCC 71
>RNAS1_PREEN (P19644) Ribonuclease pancreatic (EC 3.1.27.5) (RNase 1) (RNase A)| Length = 128 Score = 27.7 bits (60), Expect = 7.2 Identities = 12/41 (29%), Positives = 18/41 (43%) Frame = +3 Query: 201 TSC*SSTRRXEYNNWRGTNXKMYPHWPFYVTPNNRXXMIKC 323 T+C S R R TN YP+ + +P R ++ C Sbjct: 70 TNCFKSNSRMHITECRLTNGSKYPNCAYGTSPKERHIIVAC 110
>KR103_HUMAN (P60369) Keratin-associated protein 10-3 (Keratin-associated| protein 10.3) (High sulfur keratin-associated protein 10.3) (Keratin-associated protein 18-3) (Keratin-associated protein 18.3) Length = 221 Score = 27.7 bits (60), Expect = 7.2 Identities = 20/76 (26%), Positives = 27/76 (35%) Frame = -1 Query: 351 CXGXCRRVLCI*SXXACCSALHKRANVDTFXCWCPSSCCILFCVCWISSWYNTXRCATGF 172 C C +C + +CC ++ T C PSS L C S Y C Sbjct: 120 CKPICCVPVCSGASSSCCQQSSRQPACCTTSCCRPSSSVSLLCRPVCRSTY----CVP-- 173 Query: 171 VVLSCCHVIALLXPPC 124 + SCC + P C Sbjct: 174 -IPSCCAPASTCQPSC 188
>RTP3_MOUSE (Q5QGU6) Receptor-transporting protein 3 (Transmembrane protein 7)| Length = 474 Score = 27.7 bits (60), Expect = 7.2 Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 3/54 (5%) Frame = -1 Query: 351 CXGXCRRVLCI*SXXACCSALHKRANVDTFXCWCPSS---CCILFCVCWISSWY 199 C G C C +CC A C C S CC+ F + ++ WY Sbjct: 429 CCGACCESWCEIFRYSCCEA----------ACNCMSQSPLCCLAFLILFLLLWY 472
>RNS1B_PYGNE (Q8SPN3) Ribonuclease 1B pancreatic precursor (EC 3.1.27.5) (RNase| 1B) Length = 156 Score = 27.3 bits (59), Expect = 9.3 Identities = 11/41 (26%), Positives = 18/41 (43%) Frame = +3 Query: 201 TSC*SSTRRXEYNNWRGTNXKMYPHWPFYVTPNNRXXMIKC 323 T+C S + R TN YP+ + +P R ++ C Sbjct: 98 TNCFKSNSKMHITECRLTNGSKYPNCAYQTSPKERHIIVAC 138
>RNAS1_PYGNE (Q8SPN4) Ribonuclease pancreatic precursor (EC 3.1.27.5) (RNase 1)| (RNase A) Length = 156 Score = 27.3 bits (59), Expect = 9.3 Identities = 11/41 (26%), Positives = 19/41 (46%) Frame = +3 Query: 201 TSC*SSTRRXEYNNWRGTNXKMYPHWPFYVTPNNRXXMIKC 323 T+C S + + R TN YP+ + +P R ++ C Sbjct: 98 TNCFKSNSKMHITDCRLTNGSKYPNCAYRTSPKERHIIVAC 138
>NOTC2_MOUSE (O35516) Neurogenic locus notch homolog protein 2 precursor (Notch 2)| (Motch B) [Contains: Notch 2 extracellular truncation; Notch 2 intracellular domain] Length = 2470 Score = 27.3 bits (59), Expect = 9.3 Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 5/55 (9%) Frame = -1 Query: 273 VDTFXCWCPSSCCILFCV-----CWISSWYNTXRCATGFVVLSCCHVIALLXPPC 124 V+++ C CP+ + C C SS +N C G SC + P C Sbjct: 966 VNSYTCTCPAGFHGVHCENNIDECTESSCFNGGTCVDGINSFSCLCPVGFTGPFC 1020
>KRA93_HUMAN (Q9BYQ3) Keratin-associated protein 9-3 (Keratin-associated protein| 9.3) (Ultrahigh sulfur keratin-associated protein 9.3) Length = 159 Score = 27.3 bits (59), Expect = 9.3 Identities = 21/85 (24%), Positives = 29/85 (34%), Gaps = 6/85 (7%) Frame = -1 Query: 351 CXGXCRRVLCI*SXXACCSALHKRANVDTFXC---WCPSSCCILFC---VCWISSWYNTX 190 C C + C CC R C C SCC C C SS + Sbjct: 38 CVSSCCQPCC---HPTCCQNTCCRTTCCQPICVTSCCQPSCCSTPCCQPTCCGSSCGQSS 94 Query: 189 RCATGFVVLSCCHVIALLXPPCFSR 115 CA + +C H ++ P C ++ Sbjct: 95 SCAPVYCRRTCYHPTSVCLPGCLNQ 119
>ASX_DROME (Q9V727) Polycomb protein Asx (Additional sex combs)| Length = 1669 Score = 27.3 bits (59), Expect = 9.3 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 6/54 (11%) Frame = +2 Query: 116 REKQGGQRRAMTWQHDRTTKPVAQRXVLYQLLI------QHTQXRIQQLEGHQQ 259 +++Q Q++A + T PVA R Q L QH Q + QQLE HQQ Sbjct: 1021 QQQQQQQQQATSSNSLGKTLPVALRNGTQQFLSPNLIAQQHQQQQQQQLEQHQQ 1074
>NOTC2_RAT (Q9QW30) Neurogenic locus notch homolog protein 2 precursor (Notch 2)| [Contains: Notch 2 extracellular truncation; Notch 2 intracellular domain] Length = 2471 Score = 27.3 bits (59), Expect = 9.3 Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 5/55 (9%) Frame = -1 Query: 273 VDTFXCWCPSSCCILFCV-----CWISSWYNTXRCATGFVVLSCCHVIALLXPPC 124 V+++ C CP+ + C C SS +N C G SC + P C Sbjct: 968 VNSYTCTCPAGFHGVHCENNIDECTESSCFNGGTCVDGINSFSCLCPVGFTGPFC 1022 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,955,023 Number of Sequences: 219361 Number of extensions: 686469 Number of successful extensions: 1621 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 1567 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1612 length of database: 80,573,946 effective HSP length: 97 effective length of database: 59,295,929 effective search space used: 1423102296 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
