ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal13h20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CXA2_XENLA (P16864) Gap junction alpha-2 protein (Connexin-38) (... 37 0.029
2VGFR1_HUMAN (P17948) Vascular endothelial growth factor receptor... 29 7.9

>CXA2_XENLA (P16864) Gap junction alpha-2 protein (Connexin-38) (Cx38)|
          Length = 334

 Score = 37.4 bits (85), Expect = 0.029
 Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
 Frame = +3

Query: 330 QSQNSPQSSKTDGDLSSFSKTSGLY*CSA-----EAS*KAKCRSQCGHLNSGALS---SR 485
           Q   +P SS  D DL S++K SG +  S      + +   K + QC   +  A+S   S 
Sbjct: 251 QEYTNPPSSNQDIDLPSYNKMSGGHNWSRIQMEQQVNGLVKPKCQCDCWSQSAISVVVSG 310

Query: 486 QVGIVSSLE*YKSNNKDKHVQQYV 557
             GI+S+++  KSN++    QQYV
Sbjct: 311 APGIISNMDAVKSNHQTSSKQQYV 334



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>VGFR1_HUMAN (P17948) Vascular endothelial growth factor receptor 1 precursor (EC|
            2.7.10.1) (VEGFR-1) (Vascular permeability factor
            receptor) (Tyrosine-protein kinase receptor FLT) (Flt-1)
            (Tyrosine-protein kinase FRT) (Fms-like tyrosine kinase
            1)
          Length = 1338

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
 Frame = +3

Query: 294  TIITTS*VLKLMQSQNSPQSS-KTDGDLSSFSKTSGLY*CSAEAS*KAKCRSQCGHLNSG 470
            T++ +  + +   + + P++S K D  ++S SK SGL    ++ S  + C S CGH++ G
Sbjct: 1248 TLLASPMLKRFTWTDSKPKASLKIDLRVTSKSKESGL----SDVSRPSFCHSSCGHVSEG 1303


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,297,672
Number of Sequences: 219361
Number of extensions: 1312797
Number of successful extensions: 2160
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2160
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4585734400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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