| Clone Name | rbaal13h15 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ234421.1|HVU234421 Hordeum vulgare partial mRNA; clone cMWG0682 Length = 577 Score = 345 bits (174), Expect = 3e-92 Identities = 180/183 (98%) Strand = Plus / Minus Query: 1 atgatggttatgtctcagcatncaacaatccaatcagtctcattatcaccatggttctat 60 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 525 atgatggttatgtctcagcatccaacaatccaatcagtctcattatcaccatggttctat 466 Query: 61 gtcctaatcagctctcagcttcacagactgcagctncagcagtatgtacacaagcctgct 120 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 465 gtcctaatcagctctcagcttcacagactgcagctacagcagtatgtacacaagcctgct 406 Query: 121 tacagatgctttctaccacgagcaaacctngtccctatgtcctcatctgcaagcgcgagc 180 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 405 tacagatgctttctaccacgagcaaacctcgtccctatgtcctcatctgcaagcgcgagc 346 Query: 181 gtc 183 ||| Sbjct: 345 gtc 343
>gb|AC005770.3| Arabidopsis thaliana chromosome 2 clone T7F6 map CIC10A06, complete sequence Length = 96827 Score = 42.1 bits (21), Expect = 0.58 Identities = 24/25 (96%) Strand = Plus / Plus Query: 25 acaatccaatcagtctcattatcac 49 ||||||||||||||||| ||||||| Sbjct: 18436 acaatccaatcagtctctttatcac 18460
>gb|AC101775.10| Mus musculus chromosome 19, clone RP24-116B5, complete sequence Length = 167945 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 ttacagatgctttctaccac 139 |||||||||||||||||||| Sbjct: 28399 ttacagatgctttctaccac 28418
>emb|AL591069.5| Human DNA sequence from clone RP11-72O9 on chromosome 6q25.2-26 Contains the 3' end of the SSLC22A3 gene for solute carrier family 22 (extraneuronal monoamine transporter), member 3 (extraneuronal monoamine transporter solute carrier family 22 (organic cation transporter), member 3(EMT, EMTh, OCT3)), the APOARGC gene for apolipoprotein (a) related gene C and a plasminogen (PLG) pseudogene, complete sequence Length = 162083 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 tcctaatcagctctcagctt 81 |||||||||||||||||||| Sbjct: 42585 tcctaatcagctctcagctt 42566
>emb|AL359714.18| Human DNA sequence from clone RP11-22A15 on chromosome 6 Contains part of the BAI3 gene for brain-specific angiogenesis inhibitor 3, complete sequence Length = 156129 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 155 ctatgtcctcatctgcaagc 174 |||||||||||||||||||| Sbjct: 141096 ctatgtcctcatctgcaagc 141077
>ref|XM_231251.3| PREDICTED: Rattus norvegicus G protein-coupled receptor 21 (predicted) (Gpr21_predicted), mRNA Length = 3247 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 ctaatcagctctcagcttca 83 |||||||||||||||||||| Sbjct: 327 ctaatcagctctcagcttca 346
>gb|AC005592.1| Homo sapiens chromosome 5, BAC clone 79a6 (LBNL H172), complete sequence Length = 90693 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 102 gtatgtacacaagcctgct 120 ||||||||||||||||||| Sbjct: 61037 gtatgtacacaagcctgct 61019
>gb|AC146000.4| Pan troglodytes BAC clone RP43-147L18 from 7, complete sequence Length = 176192 Score = 38.2 bits (19), Expect = 9.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 28 atccaatcagtctcattatcacc 50 ||||||||||| ||||||||||| Sbjct: 49410 atccaatcagtatcattatcacc 49432
>gb|AY601819.1| Homo sapiens fibroblast growth factor 1 (acidic) (FGF1) gene, complete cds Length = 96437 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 102 gtatgtacacaagcctgct 120 ||||||||||||||||||| Sbjct: 887 gtatgtacacaagcctgct 869
>gb|AY848690.1| Microplitis demolitor bracovirus segment B, complete sequence Length = 6307 Score = 38.2 bits (19), Expect = 9.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 33 atcagtctcattatcaccatggt 55 ||||||||||||||||| ||||| Sbjct: 1947 atcagtctcattatcactatggt 1969
>gb|AC155929.6| Mus musculus BAC clone RP24-75H6 from chromosome 10, complete sequence Length = 191193 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 151 gtccctatgtcctcatctg 169 ||||||||||||||||||| Sbjct: 19034 gtccctatgtcctcatctg 19052
>gb|AC158910.3| Mus musculus chromosome 1, clone RP23-181P16, complete sequence Length = 195115 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 152 tccctatgtcctcatctgc 170 ||||||||||||||||||| Sbjct: 16270 tccctatgtcctcatctgc 16252
>gb|AC160021.3| Pan troglodytes BAC clone CH251-564M21 from chromosome unknown, complete sequence Length = 201789 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 102 gtatgtacacaagcctgct 120 ||||||||||||||||||| Sbjct: 58500 gtatgtacacaagcctgct 58482
>emb|AL645569.21| Mouse DNA sequence from clone RP23-96I9 on chromosome 11 Contains the 5' end of the gene for a novel protein similar to rat rabphilin-3a related protein, two novel genes and two CpG islands, complete sequence Length = 131144 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 54 gttctatgtcctaatcagc 72 ||||||||||||||||||| Sbjct: 87418 gttctatgtcctaatcagc 87400
>emb|AL663033.10| Mouse DNA sequence from clone RP23-78H18 on chromosome 11 Contains the 5' end of a novel gene (2410004F01Rik), a novel gene, part of a novel gene (9630013K17Rik), a novel gene and a CpG island, complete sequence Length = 126191 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 72 ctctcagcttcacagactg 90 ||||||||||||||||||| Sbjct: 52193 ctctcagcttcacagactg 52211
>gb|AC153141.7| Mus musculus BAC clone RP23-268A17 from chromosome 10, complete sequence Length = 221824 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 151 gtccctatgtcctcatctg 169 ||||||||||||||||||| Sbjct: 150882 gtccctatgtcctcatctg 150900
>gb|AC119867.11| Mus musculus chromosome 1, clone RP23-411L6, complete sequence Length = 215781 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 152 tccctatgtcctcatctgc 170 ||||||||||||||||||| Sbjct: 126148 tccctatgtcctcatctgc 126130
>gb|AC171180.2| Pan troglodytes BAC clone CH251-283C10 from chromosome unknown, complete sequence Length = 166310 Score = 38.2 bits (19), Expect = 9.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 102 gtatgtacacaagcctgct 120 ||||||||||||||||||| Sbjct: 114725 gtatgtacacaagcctgct 114707 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,127,866 Number of Sequences: 3902068 Number of extensions: 1127866 Number of successful extensions: 75433 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 75399 Number of HSP's gapped (non-prelim): 34 length of query: 183 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 161 effective length of database: 17,147,199,772 effective search space: 2760699163292 effective search space used: 2760699163292 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)