ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal13h06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CSID_SALTY (Q9FA43) Protein csiD 30 3.6
2CSID_SALTI (Q8Z4G0) Protein csiD 30 3.6
3CSID_ECOLI (P76621) Protein csiD 29 8.1

>CSID_SALTY (Q9FA43) Protein csiD|
          Length = 325

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +2

Query: 167 LTPSLEMPKLDTXNLQAGXSLL--IEKWHNHLESXFAHSI 280
           +T  + M K+D  N++ G SLL  ++ W  HLES F H +
Sbjct: 169 VTDYVLMMKIDEQNMEGGNSLLLHLDDW-EHLESFFTHPL 207



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>CSID_SALTI (Q8Z4G0) Protein csiD|
          Length = 325

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +2

Query: 167 LTPSLEMPKLDTXNLQAGXSLL--IEKWHNHLESXFAHSI 280
           +T  + M K+D  N++ G SLL  ++ W  HLES F H +
Sbjct: 169 VTDYVLMMKIDEQNMEGGNSLLLHLDDW-EHLESFFTHPL 207



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>CSID_ECOLI (P76621) Protein csiD|
          Length = 325

 Score = 28.9 bits (63), Expect = 8.1
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +2

Query: 167 LTPSLEMPKLDTXNLQAGXSLL--IEKWHNHLESXFAHSI 280
           +T  + M K+D  N+Q G SLL  ++ W  HL++ F H +
Sbjct: 169 ITDYVLMMKIDEQNMQGGNSLLLHLDDW-EHLDNYFRHPL 207


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,236,572
Number of Sequences: 219361
Number of extensions: 1024696
Number of successful extensions: 1630
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1628
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3581144924
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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