ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal13g21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PSBR_HORVU (Q40070) Photosystem II 10 kDa polypeptide, chloropla... 86 3e-17
2PSBR_ARATH (P27202) Photosystem II 10 kDa polypeptide, chloropla... 30 2.2
3PHK_RHOBA (Q7UH14) Probable phosphoketolase (EC 4.1.2.-) 28 6.5
4C75A6_CAMME (O04773) Flavonoid 3',5'-hydroxylase (EC 1.14.13.88)... 28 6.5
5L52_ADE12 (P36715) Late L1 52 kDa protein 28 6.5
6PHK_BRAJA (Q89S87) Probable phosphoketolase (EC 4.1.2.-) 28 8.5
7BPL1_MOUSE (Q920N2) Biotin--protein ligase (EC 6.3.4.-) (Biotin ... 28 8.5

>PSBR_HORVU (Q40070) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 138

 Score = 85.9 bits (211), Expect = 3e-17
 Identities = 46/65 (70%), Positives = 46/65 (70%)
 Frame = -3

Query: 196 MSACVMXXXXXXXXXXXXLQRSKLGGVRPSARPSLVIXXXXXXXVQTAQPYGPGGGVAFK 17
           MSACVM            LQRSKLGGVRPSARPSLVI       VQTAQPYGPGGGVAFK
Sbjct: 1   MSACVMASLALKPSSSPLLQRSKLGGVRPSARPSLVIVAKKAKKVQTAQPYGPGGGVAFK 60

Query: 16  EGVDA 2
           EGVDA
Sbjct: 61  EGVDA 65



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>PSBR_ARATH (P27202) Photosystem II 10 kDa polypeptide, chloroplast precursor|
          Length = 140

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
 Frame = -3

Query: 196 MSACVMXXXXXXXXXXXXLQRSKLGGVRPS---ARPSLVIXXXXXXXVQTAQPYGPGGGV 26
           M+A VM            ++++   G+ PS   ARPS  I       ++T +P+G  G +
Sbjct: 1   MAASVMLSSVTLKPAGFTVEKTAARGL-PSLTRARPSFKIVASGVKKIKTDKPFGINGSM 59

Query: 25  AFKEGVDA 2
             ++GVDA
Sbjct: 60  DLRDGVDA 67



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>PHK_RHOBA (Q7UH14) Probable phosphoketolase (EC 4.1.2.-)|
          Length = 793

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 119 RATIGEAVVGHSGQEGEEGPDCPTLRAWWWS 27
           +A + E +V H     E G D P +R W WS
Sbjct: 760 KALMQEKLVEHRRYINENGQDMPEIRDWEWS 790



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>C75A6_CAMME (O04773) Flavonoid 3',5'-hydroxylase (EC 1.14.13.88) (F3'5'H)|
           (Cytochrome P450 75A6)
          Length = 523

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 12  PSLNATPPPGP*GWAVWTFFAFLATMTNDGLAD 110
           PS +   PPGP GW +      L TM +  LAD
Sbjct: 32  PSHHHHLPPGPTGWPIIGALPLLGTMPHVSLAD 64



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>L52_ADE12 (P36715) Late L1 52 kDa protein|
          Length = 373

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -2

Query: 119 RATIGEAVVGHSGQEGEEGPDCPTL 45
           RAT   A V  SG   +E P CPTL
Sbjct: 13  RATTASAAVALSGSGEQEEPQCPTL 37



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>PHK_BRAJA (Q89S87) Probable phosphoketolase (EC 4.1.2.-)|
          Length = 801

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -2

Query: 143 VTTIQAWRRATIGEAVVGHSGQEGEEGPDCPTLRAWWWSGVQG 15
           + T  A  +  + + ++ HS    E G D P +R W W G  G
Sbjct: 759 LATRAAQVKQQLRDKLLEHSRYVREHGEDMPEIRDWVWPGKPG 801



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>BPL1_MOUSE (Q920N2) Biotin--protein ligase (EC 6.3.4.-) (Biotin apo-protein|
           ligase) [Includes:
           Biotin--[methylmalonyl-CoA-carboxytransferase] ligase
           (EC 6.3.4.9); Biotin--[propionyl-CoA-carboxylase
           [ATP-hydrolyzing]] ligase (EC 6.3.4.10) (Holocarboxylase
          Length = 722

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 16/49 (32%), Positives = 21/49 (42%)
 Frame = -2

Query: 197 HVCLCHGIFGSETIFLSSVTTIQAWRRATIGEAVVGHSGQEGEEGPDCP 51
           H+ +CH     E   + SV +  A     I +    HSG EG  G  CP
Sbjct: 102 HLSICHECLELENSTIDSVRSASA---ENIPDLPCDHSGVEGAAGELCP 147


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,459,508
Number of Sequences: 219361
Number of extensions: 511195
Number of successful extensions: 1512
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1511
length of database: 80,573,946
effective HSP length: 47
effective length of database: 70,263,979
effective search space used: 1686335496
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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