ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal13g21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X97771.1|HVPSII10K H.vulgare mRNA for PSII 10kD protein 428 e-117
2emb|AJ234420.1|HVU234420 Hordeum vulgare partial mRNA; clone cMW... 410 e-112
3emb|AJ234408.1|HVU234408 Hordeum vulgare partial mRNA; clone cMW... 410 e-112
4ref|XM_476619.1| Oryza sativa (japonica cultivar-group), mRNA 74 2e-10
5dbj|AK120691.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 2e-10
6dbj|AK062172.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 2e-10
7dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 58 1e-05
8dbj|AP004263.4| Oryza sativa (japonica cultivar-group) genomic D... 58 1e-05
9dbj|AP003957.2| Oryza sativa (japonica cultivar-group) genomic D... 58 1e-05
10gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 44 0.18
11gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome 42 0.69
12gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 42 0.69
13gb|AC136905.6| Oryza sativa (japonica cultivar-group) chromosome... 40 2.7
14gb|AC136956.4| Oryza sativa (japonica cultivar-group) chromosome... 40 2.7
15gb|AC132955.3| Mus musculus BAC clone RP24-266J20 from chromosom... 40 2.7
16gb|AC125050.6| Mus musculus BAC clone RP23-372I18 from chromosom... 40 2.7
17gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 2.7
18dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.7
19gb|AY696617.1| Pagrus major clone cm002740 microsatellite sequence 40 2.7
20dbj|AK119422.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.7
21gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 2.7
22gb|AC150648.2| Mus musculus BAC clone RP23-235N5 from 7, complet... 40 2.7 
>emb|X97771.1|HVPSII10K H.vulgare mRNA for PSII 10kD protein
          Length = 575

 Score =  428 bits (216), Expect = e-117
 Identities = 216/216 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   acgcatcgacgccttccttgaacgccactccaccaccaggcccgtagggttgggcagtct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 acgcatcgacgccttccttgaacgccactccaccaccaggcccgtagggttgggcagtct 163

                                                                       
Query: 61  ggaccttcttcgccttcttggccactatgaccaacgacggcctcgccgatggtcgcacgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 ggaccttcttcgccttcttggccactatgaccaacgacggcctcgccgatggtcgcacgc 103

                                                                       
Query: 121 ctccaagcttggatcgttgtaacagaggagaggaagatggtttcagagccaaagatgcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 ctccaagcttggatcgttgtaacagaggagaggaagatggtttcagagccaaagatgcca 43

                                               
Query: 181 tgacacaggcagacatgttgtttgtgcaacactcgc 216
           ||||||||||||||||||||||||||||||||||||
Sbjct: 42  tgacacaggcagacatgttgtttgtgcaacactcgc 7
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>emb|AJ234420.1|HVU234420 Hordeum vulgare partial mRNA; clone cMWG0681
          Length = 247

 Score =  410 bits (207), Expect = e-112
 Identities = 207/207 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   acgcatcgacgccttccttgaacgccactccaccaccaggcccgtagggttgggcagtct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 acgcatcgacgccttccttgaacgccactccaccaccaggcccgtagggttgggcagtct 150

                                                                       
Query: 61  ggaccttcttcgccttcttggccactatgaccaacgacggcctcgccgatggtcgcacgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 ggaccttcttcgccttcttggccactatgaccaacgacggcctcgccgatggtcgcacgc 90

                                                                       
Query: 121 ctccaagcttggatcgttgtaacagaggagaggaagatggtttcagagccaaagatgcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89  ctccaagcttggatcgttgtaacagaggagaggaagatggtttcagagccaaagatgcca 30

                                      
Query: 181 tgacacaggcagacatgttgtttgtgc 207
           |||||||||||||||||||||||||||
Sbjct: 29  tgacacaggcagacatgttgtttgtgc 3
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>emb|AJ234408.1|HVU234408 Hordeum vulgare partial mRNA; clone cMWG0658
          Length = 377

 Score =  410 bits (207), Expect = e-112
 Identities = 207/207 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   acgcatcgacgccttccttgaacgccactccaccaccaggcccgtagggttgggcagtct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 acgcatcgacgccttccttgaacgccactccaccaccaggcccgtagggttgggcagtct 150

                                                                       
Query: 61  ggaccttcttcgccttcttggccactatgaccaacgacggcctcgccgatggtcgcacgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 ggaccttcttcgccttcttggccactatgaccaacgacggcctcgccgatggtcgcacgc 90

                                                                       
Query: 121 ctccaagcttggatcgttgtaacagaggagaggaagatggtttcagagccaaagatgcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89  ctccaagcttggatcgttgtaacagaggagaggaagatggtttcagagccaaagatgcca 30

                                      
Query: 181 tgacacaggcagacatgttgtttgtgc 207
           |||||||||||||||||||||||||||
Sbjct: 29  tgacacaggcagacatgttgtttgtgc 3
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>ref|XM_476619.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 620

 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 85/101 (84%)
 Strand = Plus / Minus

                                                                       
Query: 3   gcatcgacgccttccttgaacgccactccaccaccaggcccgtagggttgggcagtctgg 62
           ||||| || |||||||||||| ||||||| ||| ||||||| ||||| ||||  ||||| 
Sbjct: 260 gcatcaacaccttccttgaacaccactcctccagcaggcccatagggctgggatgtctga 201

                                                    
Query: 63  accttcttcgccttcttggccactatgaccaacgacggcct 103
           | |||||| || |||||||||||||||| ||| || |||||
Sbjct: 200 atcttctttgctttcttggccactatgatcaaagatggcct 160



 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                        
Query: 155 agatggtttcagagccaaagatgccatgacacaggcagacatgtt 199
           ||||||||||||||||| ||| ||||||||| |||||| ||||||
Sbjct: 108 agatggtttcagagccagagaagccatgacagaggcagccatgtt 64
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>dbj|AK120691.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013169L11, full
           insert sequence
          Length = 777

 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 85/101 (84%)
 Strand = Plus / Minus

                                                                       
Query: 3   gcatcgacgccttccttgaacgccactccaccaccaggcccgtagggttgggcagtctgg 62
           ||||| || |||||||||||| ||||||| ||| ||||||| ||||| ||||  ||||| 
Sbjct: 261 gcatcaacaccttccttgaacaccactcctccagcaggcccatagggctgggatgtctga 202

                                                    
Query: 63  accttcttcgccttcttggccactatgaccaacgacggcct 103
           | |||||| || |||||||||||||||| ||| || |||||
Sbjct: 201 atcttctttgctttcttggccactatgatcaaagatggcct 161



 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                        
Query: 155 agatggtttcagagccaaagatgccatgacacaggcagacatgtt 199
           ||||||||||||||||| ||| ||||||||| |||||| ||||||
Sbjct: 109 agatggtttcagagccagagaagccatgacagaggcagccatgtt 65
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>dbj|AK062172.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-C07, full
           insert sequence
          Length = 620

 Score = 73.8 bits (37), Expect = 2e-10
 Identities = 85/101 (84%)
 Strand = Plus / Minus

                                                                       
Query: 3   gcatcgacgccttccttgaacgccactccaccaccaggcccgtagggttgggcagtctgg 62
           ||||| || |||||||||||| ||||||| ||| ||||||| ||||| ||||  ||||| 
Sbjct: 260 gcatcaacaccttccttgaacaccactcctccagcaggcccatagggctgggatgtctga 201

                                                    
Query: 63  accttcttcgccttcttggccactatgaccaacgacggcct 103
           | |||||| || |||||||||||||||| ||| || |||||
Sbjct: 200 atcttctttgctttcttggccactatgatcaaagatggcct 160



 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                        
Query: 155 agatggtttcagagccaaagatgccatgacacaggcagacatgtt 199
           ||||||||||||||||| ||| ||||||||| |||||| ||||||
Sbjct: 108 agatggtttcagagccagagaagccatgacagaggcagccatgtt 64
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                            
Query: 155     agatggtttcagagccaaagatgccatgacacaggcagacatgtt 199
               ||||||||||||||||| ||| ||||||||| |||||| ||||||
Sbjct: 2486597 agatggtttcagagccagagaagccatgacagaggcagccatgtt 2486553



 Score = 42.1 bits (21), Expect = 0.69
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                        
Query: 3       gcatcgacgccttccttgaacgccactccaccaccaggccc 43
               ||||| || |||||||||||| ||||||| ||| |||||||
Sbjct: 2486975 gcatcaacaccttccttgaacaccactcctccagcaggccc 2486935
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>dbj|AP004263.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0022E03
          Length = 163032

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                          
Query: 155   agatggtttcagagccaaagatgccatgacacaggcagacatgtt 199
             ||||||||||||||||| ||| ||||||||| |||||| ||||||
Sbjct: 51577 agatggtttcagagccagagaagccatgacagaggcagccatgtt 51533



 Score = 42.1 bits (21), Expect = 0.69
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                      
Query: 3     gcatcgacgccttccttgaacgccactccaccaccaggccc 43
             ||||| || |||||||||||| ||||||| ||| |||||||
Sbjct: 51955 gcatcaacaccttccttgaacaccactcctccagcaggccc 51915
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>dbj|AP003957.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1470_H06
          Length = 62794

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                          
Query: 155   agatggtttcagagccaaagatgccatgacacaggcagacatgtt 199
             ||||||||||||||||| ||| ||||||||| |||||| ||||||
Sbjct: 60344 agatggtttcagagccagagaagccatgacagaggcagccatgtt 60300



 Score = 42.1 bits (21), Expect = 0.69
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                      
Query: 3     gcatcgacgccttccttgaacgccactccaccaccaggccc 43
             ||||| || |||||||||||| ||||||| ||| |||||||
Sbjct: 60722 gcatcaacaccttccttgaacaccactcctccagcaggccc 60682
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 95     cgacggcctcgccgatggtcgc 116
              ||||||||||||||||||||||
Sbjct: 577535 cgacggcctcgccgatggtcgc 577556
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>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 42.1 bits (21), Expect = 0.69
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 64      ccttcttcgccttcttggcca 84
               |||||||||||||||||||||
Sbjct: 2184158 ccttcttcgccttcttggcca 2184178
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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 42.1 bits (21), Expect = 0.69
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 64      ccttcttcgccttcttggcca 84
               |||||||||||||||||||||
Sbjct: 2523514 ccttcttcgccttcttggcca 2523534
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>gb|AC136905.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0064E13, complete sequence
          Length = 150158

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 8     gacgccttccttgaacgcca 27
             ||||||||||||||||||||
Sbjct: 82024 gacgccttccttgaacgcca 82005
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>gb|AC136956.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0038B22,
              complete sequence
          Length = 177557

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 8      gacgccttccttgaacgcca 27
              ||||||||||||||||||||
Sbjct: 117754 gacgccttccttgaacgcca 117735
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>gb|AC132955.3| Mus musculus BAC clone RP24-266J20 from chromosome 6, complete sequence
          Length = 174507

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 183    acacaggcagacatgttgtt 202
              ||||||||||||||||||||
Sbjct: 118442 acacaggcagacatgttgtt 118461
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>gb|AC125050.6| Mus musculus BAC clone RP23-372I18 from chromosome 7, complete sequence
          Length = 199810

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 142   acagaggagaggaagatggt 161
             ||||||||||||||||||||
Sbjct: 84446 acagaggagaggaagatggt 84465
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 3       gcatcgacgccttccttgaa 22
               ||||||||||||||||||||
Sbjct: 2504750 gcatcgacgccttccttgaa 2504769
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 8        gacgccttccttgaacgcca 27
                ||||||||||||||||||||
Sbjct: 20071089 gacgccttccttgaacgcca 20071070



 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 8        gacgccttccttgaacgcca 27
                ||||||||||||||||||||
Sbjct: 19940687 gacgccttccttgaacgcca 19940668
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>gb|AY696617.1| Pagrus major clone cm002740 microsatellite sequence
          Length = 734

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 158 tggtttcagagccaaagatg 177
           ||||||||||||||||||||
Sbjct: 408 tggtttcagagccaaagatg 389
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>dbj|AK119422.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-132-H02, full
           insert sequence
          Length = 3198

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 8   gacgccttccttgaacgcca 27
           ||||||||||||||||||||
Sbjct: 240 gacgccttccttgaacgcca 221
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 8        gacgccttccttgaacgcca 27
                ||||||||||||||||||||
Sbjct: 20357765 gacgccttccttgaacgcca 20357746



 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 8        gacgccttccttgaacgcca 27
                ||||||||||||||||||||
Sbjct: 20225666 gacgccttccttgaacgcca 20225647
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>gb|AC150648.2| Mus musculus BAC clone RP23-235N5 from 7, complete sequence
          Length = 190414

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 142    acagaggagaggaagatggt 161
              ||||||||||||||||||||
Sbjct: 170269 acagaggagaggaagatggt 170288


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,853,581
Number of Sequences: 3902068
Number of extensions: 1853581
Number of successful extensions: 136116
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 135498
Number of HSP's gapped (non-prelim): 618
length of query: 216
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 194
effective length of database: 17,147,199,772
effective search space: 3326556755768
effective search space used: 3326556755768
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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