ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal13g18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CF060_HUMAN (Q8NB25) Protein C6orf60 28 5.9
2TMEM8_MOUSE (Q9ESN3) Transmembrane protein 8 precursor (M83 prot... 28 7.7

>CF060_HUMAN (Q8NB25) Protein C6orf60|
          Length = 1020

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = +3

Query: 45  SRMPLASTTGLLIIIQTSIT*ETLQNQISAANNIVKRNHDVIILYSNKIQKRNAAHE 215
           S   L S  GL+  +Q S   E LQN++    + +K   D ++    ++++    HE
Sbjct: 442 SEQGLGSAEGLIASLQDSQ--ERLQNELDLTKDSLKETKDALLNVEGELEQERQQHE 496



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>TMEM8_MOUSE (Q9ESN3) Transmembrane protein 8 precursor (M83 protein)|
          Length = 769

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 20/54 (37%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
 Frame = -1

Query: 166 TSWLRLTILLAADIWFCKVS*VMDVCMMINNPVVLARGI---LLAGSRLXLLPP 14
           TSW R    L   I    V   M   MM ++       I   LLAGS   LLPP
Sbjct: 684 TSWQRWVFYLLPGISMASVGIAMYTSMMTSDNYYYTHSIWHILLAGSAAFLLPP 737


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,733,407
Number of Sequences: 219361
Number of extensions: 517176
Number of successful extensions: 902
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 80,573,946
effective HSP length: 76
effective length of database: 63,902,510
effective search space used: 1533660240
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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