ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal13g13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY110915.1| Zea mays CL24918_1 mRNA sequence 74 5e-10
2ref|NM_188291.1| Oryza sativa (japonica cultivar-group), predic... 72 2e-09
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
4dbj|AP003197.4| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
5dbj|AK069537.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 2e-09
6emb|AL158209.23| Human DNA sequence from clone RP11-275N1 on chr... 48 0.031
7gb|AY027437.1| Arachis hypogaea serine/threonine/tyrosine kinase... 48 0.031
8dbj|AP002867.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.12
9dbj|AP003338.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.12
10ref|XM_549896.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.49
11dbj|AK068796.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.49
12gb|AE017321.1| Wolbachia endosymbiont strain TRS of Brugia malay... 44 0.49
13ref|XM_549894.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.9
14ref|XM_549898.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.9
15gb|AY652891.1| Oryza sativa protein kinase RLK17 mRNA, complete cds 42 1.9
16gb|AC154470.2| Mus musculus BAC clone RP23-193P13 from chromosom... 42 1.9
17gb|AF238476.1|AF238476 Oryza sativa receptor-like kinase (RLG11)... 42 1.9
18gb|AF238475.1|AF238475 Oryza sativa receptor-like kinase (RLG17)... 42 1.9
19dbj|AP003219.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
20dbj|AK068451.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.9
21ref|NM_120796.2| Arabidopsis thaliana ATP binding / kinase/ prot... 40 7.6
22gb|AC109145.11| Mus musculus chromosome 1, clone RP23-109O14, co... 40 7.6
23gb|AY487342.1| Oryctolagus cuniculus transient receptor potentia... 40 7.6
24gb|AY513245.1| Cavia porcellus TRPV1 mRNA, complete cds 40 7.6
25gb|AC139206.5| Mus musculus chromosome 1, clone RP23-82P18, comp... 40 7.6
26gb|AY074528.1| Arabidopsis thaliana unknown protein (At5g07140) ... 40 7.6
27emb|AL163652.1|ATT28J14 Arabidopsis thaliana DNA chromosome 5, B... 40 7.6
28emb|CR391969.13| Zebrafish DNA sequence from clone CH211-131C14 ... 40 7.6
29gb|AC111163.6| Homo sapiens chromosome 11, clone RP11-959A20, co... 40 7.6
30emb|AJ492922.2|CPO492922 Cavia porcellus mRNA for transient rece... 40 7.6
31gb|AC149801.3| Medicago truncatula chromosome 2 BAC clone mth2-3... 40 7.6
32dbj|AK222031.1| Arabidopsis thaliana mRNA for hypothetical prote... 40 7.6
33gb|AF327067.1|AF327067 Rattus norvegicus vanilloid receptor (Vr1... 40 7.6
34dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
35gb|AC068609.3| Mus musculus strain C57BL6/J chromosome 5 clone R... 40 7.6
36gb|AC087741.18| Homo sapiens chromosome 17, clone RP11-334C17, c... 40 7.6
37dbj|AP003686.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.6
38dbj|AK065388.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.6 
>gb|AY110915.1| Zea mays CL24918_1 mRNA sequence
          Length = 557

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 52/57 (91%)
 Strand = Plus / Plus

                                                                    
Query: 334 ctgccagaaatctggcctcttctcgggctgcaacgcgcagcactgctcgatcagggg 390
           ||||||||| || |||||||| || |||||||| |||||||||||||||||||||||
Sbjct: 460 ctgccagaagtcgggcctcttgtcaggctgcaaggcgcagcactgctcgatcagggg 516
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>ref|NM_188291.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1692

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 69/80 (86%)
 Strand = Plus / Minus

                                                                        
Query: 316  ctccagggttttcacaagctgccagaaatctggcctcttctcgggctgcaacgcgcagca 375
            ||||||| |||| |||| |||||||||||| |||||||| ||||||||||| | ||| ||
Sbjct: 1569 ctccaggattttaacaatctgccagaaatcaggcctcttttcgggctgcaatgagcaaca 1510

                                
Query: 376  ctgctcgatcaggggtctca 395
            ||| |||||||  |||||||
Sbjct: 1509 ctgttcgatcaacggtctca 1490



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 91/112 (81%)
 Strand = Plus / Minus

                                                                        
Query: 446  gcaacggcataagccacctggactggggataggttctcgaaaggaattcttccggtcacc 505
            ||||| ||||||||| ||||||  |||| || ||  ||||||||||||||||| |  | |
Sbjct: 1442 gcaacagcataagccgcctggagaggggttaagtcatcgaaaggaattcttccagagatc 1383

                                                                
Query: 506  atctcccacagcagcagtccaaagctatacacatccacctttcggttatatg 557
            || ||||| || || |||||||||||||| || || ||||| ||||| ||||
Sbjct: 1382 atttcccataggagtagtccaaagctatagacgtcgaccttccggttgtatg 1331
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 69/80 (86%)
 Strand = Plus / Plus

                                                                           
Query: 316     ctccagggttttcacaagctgccagaaatctggcctcttctcgggctgcaacgcgcagca 375
               ||||||| |||| |||| |||||||||||| |||||||| ||||||||||| | ||| ||
Sbjct: 5509871 ctccaggattttaacaatctgccagaaatcaggcctcttttcgggctgcaatgagcaaca 5509930

                                   
Query: 376     ctgctcgatcaggggtctca 395
               ||| |||||||  |||||||
Sbjct: 5509931 ctgttcgatcaacggtctca 5509950



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 91/112 (81%)
 Strand = Plus / Plus

                                                                           
Query: 446     gcaacggcataagccacctggactggggataggttctcgaaaggaattcttccggtcacc 505
               ||||| ||||||||| ||||||  |||| || ||  ||||||||||||||||| |  | |
Sbjct: 5510106 gcaacagcataagccgcctggagaggggttaagtcatcgaaaggaattcttccagagatc 5510165

                                                                   
Query: 506     atctcccacagcagcagtccaaagctatacacatccacctttcggttatatg 557
               || ||||| || || |||||||||||||| || || ||||| ||||| ||||
Sbjct: 5510166 atttcccataggagtagtccaaagctatagacgtcgaccttccggttgtatg 5510217



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                 
Query: 503    accatctcccacagcagcagtccaaagctatacac 537
              ||||||||| |||| |||| |||||||||||||||
Sbjct: 839155 accatctccaacagaagcattccaaagctatacac 839189



 Score = 44.1 bits (22), Expect = 0.49
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                
Query: 503    accatctcccacagcagcagtccaaagctataca 536
              ||||||||| |||| |||| ||||||||||||||
Sbjct: 751533 accatctccaacagaagcattccaaagctataca 751566



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                   
Query: 504    ccatctcccacagcagcagtccaaagctatacacatc 540
              ||||||||  |||||||| |||||||||||| |||||
Sbjct: 766741 ccatctccagcagcagcattccaaagctatagacatc 766777



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                   
Query: 504    ccatctcccacagcagcagtccaaagctatacacatc 540
              |||||||| |||| |||| |||||||||||| |||||
Sbjct: 742228 ccatctccaacagaagcattccaaagctataaacatc 742264
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>dbj|AP003197.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1015E06
          Length = 164583

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 69/80 (86%)
 Strand = Plus / Plus

                                                                          
Query: 316    ctccagggttttcacaagctgccagaaatctggcctcttctcgggctgcaacgcgcagca 375
              ||||||| |||| |||| |||||||||||| |||||||| ||||||||||| | ||| ||
Sbjct: 106711 ctccaggattttaacaatctgccagaaatcaggcctcttttcgggctgcaatgagcaaca 106770

                                  
Query: 376    ctgctcgatcaggggtctca 395
              ||| |||||||  |||||||
Sbjct: 106771 ctgttcgatcaacggtctca 106790



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 91/112 (81%)
 Strand = Plus / Plus

                                                                          
Query: 446    gcaacggcataagccacctggactggggataggttctcgaaaggaattcttccggtcacc 505
              ||||| ||||||||| ||||||  |||| || ||  ||||||||||||||||| |  | |
Sbjct: 106946 gcaacagcataagccgcctggagaggggttaagtcatcgaaaggaattcttccagagatc 107005

                                                                  
Query: 506    atctcccacagcagcagtccaaagctatacacatccacctttcggttatatg 557
              || ||||| || || |||||||||||||| || || ||||| ||||| ||||
Sbjct: 107006 atttcccataggagtagtccaaagctatagacgtcgaccttccggttgtatg 107057
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>dbj|AK069537.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023019I05, full
            insert sequence
          Length = 2565

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 69/80 (86%)
 Strand = Plus / Minus

                                                                        
Query: 316  ctccagggttttcacaagctgccagaaatctggcctcttctcgggctgcaacgcgcagca 375
            ||||||| |||| |||| |||||||||||| |||||||| ||||||||||| | ||| ||
Sbjct: 2216 ctccaggattttaacaatctgccagaaatcaggcctcttttcgggctgcaatgagcaaca 2157

                                
Query: 376  ctgctcgatcaggggtctca 395
            ||| |||||||  |||||||
Sbjct: 2156 ctgttcgatcaacggtctca 2137



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 91/112 (81%)
 Strand = Plus / Minus

                                                                        
Query: 446  gcaacggcataagccacctggactggggataggttctcgaaaggaattcttccggtcacc 505
            ||||| ||||||||| ||||||  |||| || ||  ||||||||||||||||| |  | |
Sbjct: 2089 gcaacagcataagccgcctggagaggggttaagtcatcgaaaggaattcttccagagatc 2030

                                                                
Query: 506  atctcccacagcagcagtccaaagctatacacatccacctttcggttatatg 557
            || ||||| || || |||||||||||||| || || ||||| ||||| ||||
Sbjct: 2029 atttcccataggagtagtccaaagctatagacgtcgaccttccggttgtatg 1978
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>emb|AL158209.23| Human DNA sequence from clone RP11-275N1 on chromosome 10 Contains a
             novel gene and a pseudogene similar to part of FLJ10581,
             complete sequence
          Length = 132327

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 20    tgtacagctactaatgtaataaaa 43
             ||||||||||||||||||||||||
Sbjct: 96731 tgtacagctactaatgtaataaaa 96708
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>gb|AY027437.1| Arachis hypogaea serine/threonine/tyrosine kinase mRNA, complete cds
          Length = 1762

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 524  ccaaagctatacacatccaccttt 547
            ||||||||||||||||||||||||
Sbjct: 1159 ccaaagctatacacatccaccttt 1136
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>dbj|AP002867.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0463F06
          Length = 144322

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                
Query: 503   accatctcccacagcagcagtccaaagctatacac 537
             ||||||||| |||| |||| |||||||||||||||
Sbjct: 61829 accatctccaacagaagcattccaaagctatacac 61863
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>dbj|AP003338.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OJ1212_B09
          Length = 130728

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                 
Query: 503    accatctcccacagcagcagtccaaagctatacac 537
              ||||||||| |||| |||| |||||||||||||||
Sbjct: 116355 accatctccaacagaagcattccaaagctatacac 116389



 Score = 44.1 bits (22), Expect = 0.49
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 503   accatctcccacagcagcagtccaaagctataca 536
             ||||||||| |||| |||| ||||||||||||||
Sbjct: 28733 accatctccaacagaagcattccaaagctataca 28766



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                  
Query: 504   ccatctcccacagcagcagtccaaagctatacacatc 540
             ||||||||  |||||||| |||||||||||| |||||
Sbjct: 43941 ccatctccagcagcagcattccaaagctatagacatc 43977



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                  
Query: 504   ccatctcccacagcagcagtccaaagctatacacatc 540
             |||||||| |||| |||| |||||||||||| |||||
Sbjct: 19428 ccatctccaacagaagcattccaaagctataaacatc 19464
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>ref|XM_549896.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2193

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 503  accatctcccacagcagcagtccaaagctataca 536
            ||||||||| |||| |||| ||||||||||||||
Sbjct: 1740 accatctccaacagaagcattccaaagctataca 1707
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>dbj|AK068796.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013166D14, full
            insert sequence
          Length = 2194

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 503  accatctcccacagcagcagtccaaagctataca 536
            ||||||||| |||| |||| ||||||||||||||
Sbjct: 1740 accatctccaacagaagcattccaaagctataca 1707
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>gb|AE017321.1| Wolbachia endosymbiont strain TRS of Brugia malayi, complete genome
          Length = 1080084

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 86     aattttcaaacataaaatcgaa 107
              ||||||||||||||||||||||
Sbjct: 702499 aattttcaaacataaaatcgaa 702478
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>ref|XM_549894.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1806

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 504  ccatctcccacagcagcagtccaaagctatacacatc 540
            |||||||| |||| |||| |||||||||||| |||||
Sbjct: 1459 ccatctccaacagaagcattccaaagctataaacatc 1423
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>ref|XM_549898.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2241

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 504  ccatctcccacagcagcagtccaaagctatacacatc 540
            ||||||||  |||||||| |||||||||||| |||||
Sbjct: 1681 ccatctccagcagcagcattccaaagctatagacatc 1645
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>gb|AY652891.1| Oryza sativa protein kinase RLK17 mRNA, complete cds
          Length = 2150

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 504  ccatctcccacagcagcagtccaaagctatacacatc 540
            ||||||||  |||||||| |||||||||||| |||||
Sbjct: 1656 ccatctccagcagcagcattccaaagctatagacatc 1620
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>gb|AC154470.2| Mus musculus BAC clone RP23-193P13 from chromosome 13, complete sequence
          Length = 216294

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 32     aatgtaataaaagctagttgt 52
              |||||||||||||||||||||
Sbjct: 135052 aatgtaataaaagctagttgt 135032
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>gb|AF238476.1|AF238476 Oryza sativa receptor-like kinase (RLG11) gene, complete cds
          Length = 3628

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 504  ccatctcccacagcagcagtccaaagctatacacatc 540
            |||||||| |||| |||| |||||||||||| |||||
Sbjct: 3276 ccatctccaacagaagcattccaaagctataaacatc 3240
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>gb|AF238475.1|AF238475 Oryza sativa receptor-like kinase (RLG17) gene, complete cds
          Length = 3999

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 504  ccatctcccacagcagcagtccaaagctatacacatc 540
            ||||||||  |||||||| |||||||||||| |||||
Sbjct: 2661 ccatctccagcagcagcattccaaagctatagacatc 2625
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>dbj|AP003219.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBb0032H19
          Length = 126434

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                   
Query: 504    ccatctcccacagcagcagtccaaagctatacacatc 540
              |||||||| |||| |||| |||||||||||| |||||
Sbjct: 125972 ccatctccaacagaagcattccaaagctataaacatc 126008
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>dbj|AK068451.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013152M16, full
            insert sequence
          Length = 2240

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 504  ccatctcccacagcagcagtccaaagctatacacatc 540
            ||||||||  |||||||| |||||||||||| |||||
Sbjct: 1680 ccatctccagcagcagcattccaaagctatagacatc 1644
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>ref|NM_120796.2| Arabidopsis thaliana ATP binding / kinase/ protein kinase/ protein
            serine/threonine kinase/ protein-tyrosine kinase
            AT5G07140 mRNA, complete cds
          Length = 2200

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 500  gtcaccatctcccacagcagcagtccaaagctatac 535
            |||||||||||||| |||| ||  ||||||||||||
Sbjct: 1604 gtcaccatctcccaaagcaccatcccaaagctatac 1569
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>gb|AC109145.11| Mus musculus chromosome 1, clone RP23-109O14, complete sequence
          Length = 186661

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 492    ttcttccggtcaccatctcccaca 515
              |||||||||||||| |||||||||
Sbjct: 156206 ttcttccggtcaccctctcccaca 156229
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>gb|AY487342.1| Oryctolagus cuniculus transient receptor potential vanilloid type 1
            (TRPV1) mRNA, complete cds
          Length = 3361

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 381  cgatcaggggtctcactgctgctg 404
            |||| |||||||||||||||||||
Sbjct: 1447 cgattaggggtctcactgctgctg 1424
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>gb|AY513245.1| Cavia porcellus TRPV1 mRNA, complete cds
          Length = 2520

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 381  cgatcaggggtctcactgctgctg 404
            |||| |||||||||||||||||||
Sbjct: 1232 cgattaggggtctcactgctgctg 1209
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>gb|AC139206.5| Mus musculus chromosome 1, clone RP23-82P18, complete sequence
          Length = 304494

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 492    ttcttccggtcaccatctcccaca 515
              |||||||||||||| |||||||||
Sbjct: 276692 ttcttccggtcaccctctcccaca 276669
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>gb|AY074528.1| Arabidopsis thaliana unknown protein (At5g07140) mRNA, partial cds
          Length = 2147

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 500  gtcaccatctcccacagcagcagtccaaagctatac 535
            |||||||||||||| |||| ||  ||||||||||||
Sbjct: 1604 gtcaccatctcccaaagcaccatcccaaagctatac 1569
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>emb|AL163652.1|ATT28J14 Arabidopsis thaliana DNA chromosome 5, BAC clone T28J14 (ESSA project)
          Length = 104607

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                 
Query: 500   gtcaccatctcccacagcagcagtccaaagctatac 535
             |||||||||||||| |||| ||  ||||||||||||
Sbjct: 19187 gtcaccatctcccaaagcaccatcccaaagctatac 19152
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>emb|CR391969.13| Zebrafish DNA sequence from clone CH211-131C14 in linkage group 5,
              complete sequence
          Length = 159249

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 313    tttctccagggttttcacaa 332
              ||||||||||||||||||||
Sbjct: 128748 tttctccagggttttcacaa 128767
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>gb|AC111163.6| Homo sapiens chromosome 11, clone RP11-959A20, complete sequence
          Length = 71871

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 300   taacagactggattttctcc 319
             ||||||||||||||||||||
Sbjct: 18461 taacagactggattttctcc 18480
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>emb|AJ492922.2|CPO492922 Cavia porcellus mRNA for transient receptor potential cation channel
            V1 (trpv1 gene)
          Length = 2520

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 381  cgatcaggggtctcactgctgctg 404
            |||| |||||||||||||||||||
Sbjct: 1232 cgattaggggtctcactgctgctg 1209
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>gb|AC149801.3| Medicago truncatula chromosome 2 BAC clone mth2-32i15, complete
             sequence
          Length = 96221

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                                 
Query: 335   tgccagaaatctggcctcttctcgggctgcaacgcgcagcactgctcgatca 386
             ||||||||||| |||||||| || || |||||||  || || ||||||||||
Sbjct: 24339 tgccagaaatcaggcctcttatccggttgcaacgaccaacattgctcgatca 24288
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>dbj|AK222031.1| Arabidopsis thaliana mRNA for hypothetical protein, partial cds,
           clone: RAFL22-72-J11
          Length = 953

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 500 gtcaccatctcccacagcagcagtccaaagctatac 535
           |||||||||||||| |||| ||  ||||||||||||
Sbjct: 348 gtcaccatctcccaaagcaccatcccaaagctatac 313
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>gb|AF327067.1|AF327067 Rattus norvegicus vanilloid receptor (Vr1) gene, partial cds,
            alternatively spliced
          Length = 11273

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 385  caggggtctcactgctgctg 404
            ||||||||||||||||||||
Sbjct: 7151 caggggtctcactgctgctg 7132
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 524      ccaaagctatacacatccaccttt 547
                ||||||||||||||||| ||||||
Sbjct: 20570141 ccaaagctatacacatcaaccttt 20570118
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>gb|AC068609.3| Mus musculus strain C57BL6/J chromosome 5 clone RP23-98L5, complete
             sequence
          Length = 192263

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 88    ttttcaaacataaaatcgaa 107
             ||||||||||||||||||||
Sbjct: 96993 ttttcaaacataaaatcgaa 96974
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>gb|AC087741.18| Homo sapiens chromosome 17, clone RP11-334C17, complete sequence
          Length = 182016

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 387   ggggtctcactgctgctggg 406
             ||||||||||||||||||||
Sbjct: 90958 ggggtctcactgctgctggg 90939
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>dbj|AP003686.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0659D09
          Length = 168253

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 524    ccaaagctatacacatccaccttt 547
              ||||||||||||||||| ||||||
Sbjct: 142436 ccaaagctatacacatcaaccttt 142413
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>dbj|AK065388.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013022I17, full
            insert sequence
          Length = 2882

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 524  ccaaagctatacacatccaccttt 547
            ||||||||||||||||| ||||||
Sbjct: 2349 ccaaagctatacacatcaaccttt 2326


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,675,840
Number of Sequences: 3902068
Number of extensions: 4675840
Number of successful extensions: 84554
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 84391
Number of HSP's gapped (non-prelim): 163
length of query: 561
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 538
effective length of database: 17,143,297,704
effective search space: 9223094164752
effective search space used: 9223094164752
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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