ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal13f18 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_474397.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1341 Score = 325 bits (164), Expect = 1e-85 Identities = 299/344 (86%) Strand = Plus / Minus Query: 394 agcaacagcccagcaccggtgtcgtgagacatctcgctgctgctctgcaccaccgagcgc 453 ||||||| |||||| || || || |||||||||||||||||||| || ||| | |||| Sbjct: 1124 agcaacaacccagcgcctgtatcatgagacatctcgctgctgctttgaaccgcttggcgc 1065 Query: 454 agaactttggtgcaggaggaggcagggccagactgtgacaatgatgctgagatacaacat 513 ||||||||||| || | || ||||||||||| ||| |||||||| ||||||||||||| Sbjct: 1064 agaactttggtacaagcagaagcagggccagattgtatcaatgatgatgagatacaacat 1005 Query: 514 tcacgggaagcaaatcctctaattaagtgttcgccagctccggttgcacaacacccaatt 573 ||||| | ||||||||||||||| |||||||| || ||||| |||||||||||||||| | Sbjct: 1004 tcacgtgcagcaaatcctctaatcaagtgttcaccggctccagttgcacaacacccaact 945 Query: 574 acaaatggtgtaccaaatggtcctttggatgaagcccagcacccagagccgtacatagca 633 | ||| ||||| ||||| || ||||||||||| |||||||||||||| || ||||||||| Sbjct: 944 ataaacggtgtgccaaagggccctttggatgaggcccagcacccagacccatacatagca 885 Query: 634 gctaatccaacccggccatctacctttagtgcaatgccaccactagatgcgccagatgct 693 || || |||||||| ||||||||||||||||||||||||||||| ||||| || |||||| Sbjct: 884 gccaaaccaacccgtccatctacctttagtgcaatgccaccactggatgctcctgatgct 825 Query: 694 acatttccatactcatcaacacatacagcaccaacagtatccat 737 | ||||||||| |||||||||| |||||||||||||||||||| Sbjct: 824 atatttccataagcatcaacacaaacagcaccaacagtatccat 781
>dbj|AK121739.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033085H01, full insert sequence Length = 1569 Score = 325 bits (164), Expect = 1e-85 Identities = 299/344 (86%) Strand = Plus / Minus Query: 394 agcaacagcccagcaccggtgtcgtgagacatctcgctgctgctctgcaccaccgagcgc 453 ||||||| |||||| || || || |||||||||||||||||||| || ||| | |||| Sbjct: 1179 agcaacaacccagcgcctgtatcatgagacatctcgctgctgctttgaaccgcttggcgc 1120 Query: 454 agaactttggtgcaggaggaggcagggccagactgtgacaatgatgctgagatacaacat 513 ||||||||||| || | || ||||||||||| ||| |||||||| ||||||||||||| Sbjct: 1119 agaactttggtacaagcagaagcagggccagattgtatcaatgatgatgagatacaacat 1060 Query: 514 tcacgggaagcaaatcctctaattaagtgttcgccagctccggttgcacaacacccaatt 573 ||||| | ||||||||||||||| |||||||| || ||||| |||||||||||||||| | Sbjct: 1059 tcacgtgcagcaaatcctctaatcaagtgttcaccggctccagttgcacaacacccaact 1000 Query: 574 acaaatggtgtaccaaatggtcctttggatgaagcccagcacccagagccgtacatagca 633 | ||| ||||| ||||| || ||||||||||| |||||||||||||| || ||||||||| Sbjct: 999 ataaacggtgtgccaaagggccctttggatgaggcccagcacccagacccatacatagca 940 Query: 634 gctaatccaacccggccatctacctttagtgcaatgccaccactagatgcgccagatgct 693 || || |||||||| ||||||||||||||||||||||||||||| ||||| || |||||| Sbjct: 939 gccaaaccaacccgtccatctacctttagtgcaatgccaccactggatgctcctgatgct 880 Query: 694 acatttccatactcatcaacacatacagcaccaacagtatccat 737 | ||||||||| |||||||||| |||||||||||||||||||| Sbjct: 879 atatttccataagcatcaacacaaacagcaccaacagtatccat 836
>dbj|AK064978.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C03, full insert sequence Length = 1516 Score = 325 bits (164), Expect = 1e-85 Identities = 299/344 (86%) Strand = Plus / Minus Query: 394 agcaacagcccagcaccggtgtcgtgagacatctcgctgctgctctgcaccaccgagcgc 453 ||||||| |||||| || || || |||||||||||||||||||| || ||| | |||| Sbjct: 1173 agcaacaacccagcgcctgtatcatgagacatctcgctgctgctttgaaccgcttggcgc 1114 Query: 454 agaactttggtgcaggaggaggcagggccagactgtgacaatgatgctgagatacaacat 513 ||||||||||| || | || ||||||||||| ||| |||||||| ||||||||||||| Sbjct: 1113 agaactttggtacaagcagaagcagggccagattgtatcaatgatgatgagatacaacat 1054 Query: 514 tcacgggaagcaaatcctctaattaagtgttcgccagctccggttgcacaacacccaatt 573 ||||| | ||||||||||||||| |||||||| || ||||| |||||||||||||||| | Sbjct: 1053 tcacgtgcagcaaatcctctaatcaagtgttcaccggctccagttgcacaacacccaact 994 Query: 574 acaaatggtgtaccaaatggtcctttggatgaagcccagcacccagagccgtacatagca 633 | ||| ||||| ||||| || ||||||||||| |||||||||||||| || ||||||||| Sbjct: 993 ataaacggtgtgccaaagggccctttggatgaggcccagcacccagacccatacatagca 934 Query: 634 gctaatccaacccggccatctacctttagtgcaatgccaccactagatgcgccagatgct 693 || || |||||||| ||||||||||||||||||||||||||||| ||||| || |||||| Sbjct: 933 gccaaaccaacccgtccatctacctttagtgcaatgccaccactggatgctcctgatgct 874 Query: 694 acatttccatactcatcaacacatacagcaccaacagtatccat 737 | ||||||||| |||||||||| |||||||||||||||||||| Sbjct: 873 atatttccataagcatcaacacaaacagcaccaacagtatccat 830
>emb|AL606641.3|OSJN00074 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0032F06, complete sequence Length = 148023 Score = 182 bits (92), Expect = 1e-42 Identities = 149/168 (88%) Strand = Plus / Minus Query: 491 acaatgatgctgagatacaacattcacgggaagcaaatcctctaattaagtgttcgccag 550 ||||||||| |||||||||||||||||| | ||||||||||||||| |||||||| || | Sbjct: 83579 acaatgatgatgagatacaacattcacgtgcagcaaatcctctaatcaagtgttcaccgg 83520 Query: 551 ctccggttgcacaacacccaattacaaatggtgtaccaaatggtcctttggatgaagccc 610 |||| |||||||||||||||| || ||| ||||| ||||| || ||||||||||| |||| Sbjct: 83519 ctccagttgcacaacacccaactataaacggtgtgccaaagggccctttggatgaggccc 83460 Query: 611 agcacccagagccgtacatagcagctaatccaacccggccatctacct 658 |||||||||| || ||||||||||| || |||||||| |||||||||| Sbjct: 83459 agcacccagacccatacatagcagccaaaccaacccgtccatctacct 83412 Score = 109 bits (55), Expect = 1e-20 Identities = 76/83 (91%) Strand = Plus / Minus Query: 655 acctttagtgcaatgccaccactagatgcgccagatgctacatttccatactcatcaaca 714 ||||||||||||||||||||||| ||||| || ||||||| ||||||||| |||||||| Sbjct: 83285 acctttagtgcaatgccaccactggatgctcctgatgctatatttccataagcatcaaca 83226 Query: 715 catacagcaccaacagtatccat 737 || |||||||||||||||||||| Sbjct: 83225 caaacagcaccaacagtatccat 83203 Score = 56.0 bits (28), Expect = 2e-04 Identities = 76/92 (82%) Strand = Plus / Minus Query: 394 agcaacagcccagcaccggtgtcgtgagacatctcgctgctgctctgcaccaccgagcgc 453 ||||||| |||||| || || || |||||||||||||||||||| || ||| | |||| Sbjct: 84019 agcaacaacccagcgcctgtatcatgagacatctcgctgctgctttgaaccgcttggcgc 83960 Query: 454 agaactttggtgcaggaggaggcagggccaga 485 ||||||||||| || | || ||||||||||| Sbjct: 83959 agaactttggtacaagcagaagcagggccaga 83928
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 182 bits (92), Expect = 1e-42 Identities = 149/168 (88%) Strand = Plus / Minus Query: 491 acaatgatgctgagatacaacattcacgggaagcaaatcctctaattaagtgttcgccag 550 ||||||||| |||||||||||||||||| | ||||||||||||||| |||||||| || | Sbjct: 34877466 acaatgatgatgagatacaacattcacgtgcagcaaatcctctaatcaagtgttcaccgg 34877407 Query: 551 ctccggttgcacaacacccaattacaaatggtgtaccaaatggtcctttggatgaagccc 610 |||| |||||||||||||||| || ||| ||||| ||||| || ||||||||||| |||| Sbjct: 34877406 ctccagttgcacaacacccaactataaacggtgtgccaaagggccctttggatgaggccc 34877347 Query: 611 agcacccagagccgtacatagcagctaatccaacccggccatctacct 658 |||||||||| || ||||||||||| || |||||||| |||||||||| Sbjct: 34877346 agcacccagacccatacatagcagccaaaccaacccgtccatctacct 34877299 Score = 109 bits (55), Expect = 1e-20 Identities = 76/83 (91%) Strand = Plus / Minus Query: 655 acctttagtgcaatgccaccactagatgcgccagatgctacatttccatactcatcaaca 714 ||||||||||||||||||||||| ||||| || ||||||| ||||||||| |||||||| Sbjct: 34877172 acctttagtgcaatgccaccactggatgctcctgatgctatatttccataagcatcaaca 34877113 Query: 715 catacagcaccaacagtatccat 737 || |||||||||||||||||||| Sbjct: 34877112 caaacagcaccaacagtatccat 34877090 Score = 56.0 bits (28), Expect = 2e-04 Identities = 76/92 (82%) Strand = Plus / Minus Query: 394 agcaacagcccagcaccggtgtcgtgagacatctcgctgctgctctgcaccaccgagcgc 453 ||||||| |||||| || || || |||||||||||||||||||| || ||| | |||| Sbjct: 34877906 agcaacaacccagcgcctgtatcatgagacatctcgctgctgctttgaaccgcttggcgc 34877847 Query: 454 agaactttggtgcaggaggaggcagggccaga 485 ||||||||||| || | || ||||||||||| Sbjct: 34877846 agaactttggtacaagcagaagcagggccaga 34877815
>emb|AL732352.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0124B04, complete sequence Length = 115564 Score = 182 bits (92), Expect = 1e-42 Identities = 149/168 (88%) Strand = Plus / Minus Query: 491 acaatgatgctgagatacaacattcacgggaagcaaatcctctaattaagtgttcgccag 550 ||||||||| |||||||||||||||||| | ||||||||||||||| |||||||| || | Sbjct: 57080 acaatgatgatgagatacaacattcacgtgcagcaaatcctctaatcaagtgttcaccgg 57021 Query: 551 ctccggttgcacaacacccaattacaaatggtgtaccaaatggtcctttggatgaagccc 610 |||| |||||||||||||||| || ||| ||||| ||||| || ||||||||||| |||| Sbjct: 57020 ctccagttgcacaacacccaactataaacggtgtgccaaagggccctttggatgaggccc 56961 Query: 611 agcacccagagccgtacatagcagctaatccaacccggccatctacct 658 |||||||||| || ||||||||||| || |||||||| |||||||||| Sbjct: 56960 agcacccagacccatacatagcagccaaaccaacccgtccatctacct 56913 Score = 127 bits (64), Expect = 6e-26 Identities = 142/168 (84%) Strand = Plus / Plus Query: 491 acaatgatgctgagatacaacattcacgggaagcaaatcctctaattaagtgttcgccag 550 ||||||||| ||||| ||||||||||| | |||||||||||| || ||||||||||||| Sbjct: 100232 acaatgatgatgagacacaacattcacatgcagcaaatcctctgatcaagtgttcgccag 100291 Query: 551 ctccggttgcacaacacccaattacaaatggtgtaccaaatggtcctttggatgaagccc 610 |||| |||||||||||||||| || ||| || || |||| | ||||||||| | |||| Sbjct: 100292 ctccagttgcacaacacccaactataaacggcgtgccaaggagccctttggatcaggccc 100351 Query: 611 agcacccagagccgtacatagcagctaatccaacccggccatctacct 658 |||||||||| || || |||||||| || ||||||| |||||||||| Sbjct: 100352 agcacccagacccatatatagcagccaagccaacccatccatctacct 100399 Score = 109 bits (55), Expect = 1e-20 Identities = 76/83 (91%) Strand = Plus / Minus Query: 655 acctttagtgcaatgccaccactagatgcgccagatgctacatttccatactcatcaaca 714 ||||||||||||||||||||||| ||||| || ||||||| ||||||||| |||||||| Sbjct: 56786 acctttagtgcaatgccaccactggatgctcctgatgctatatttccataagcatcaaca 56727 Query: 715 catacagcaccaacagtatccat 737 || |||||||||||||||||||| Sbjct: 56726 caaacagcaccaacagtatccat 56704 Score = 56.0 bits (28), Expect = 2e-04 Identities = 76/92 (82%) Strand = Plus / Minus Query: 394 agcaacagcccagcaccggtgtcgtgagacatctcgctgctgctctgcaccaccgagcgc 453 ||||||| |||||| || || || |||||||||||||||||||| || ||| | |||| Sbjct: 57520 agcaacaacccagcgcctgtatcatgagacatctcgctgctgctttgaaccgcttggcgc 57461 Query: 454 agaactttggtgcaggaggaggcagggccaga 485 ||||||||||| || | || ||||||||||| Sbjct: 57460 agaactttggtacaagcagaagcagggccaga 57429 Score = 46.1 bits (23), Expect = 0.17 Identities = 59/71 (83%) Strand = Plus / Minus Query: 268 acctttggactgctcatattgctcccgaaatacccgatgccgaacgatggggaggagtag 327 ||||| |||||| |||||||||| |||| ||| || | || || || |||||||| ||| Sbjct: 57719 accttaggactgttcatattgcttccgagataaccaacaccaaatgaaggggaggaatag 57660 Query: 328 gcagcaacaag 338 ||||||||||| Sbjct: 57659 gcagcaacaag 57649
>emb|AL732345.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0306F12, complete sequence Length = 84361 Score = 127 bits (64), Expect = 6e-26 Identities = 142/168 (84%) Strand = Plus / Plus Query: 491 acaatgatgctgagatacaacattcacgggaagcaaatcctctaattaagtgttcgccag 550 ||||||||| ||||| ||||||||||| | |||||||||||| || ||||||||||||| Sbjct: 5285 acaatgatgatgagacacaacattcacatgcagcaaatcctctgatcaagtgttcgccag 5344 Query: 551 ctccggttgcacaacacccaattacaaatggtgtaccaaatggtcctttggatgaagccc 610 |||| |||||||||||||||| || ||| || || |||| | ||||||||| | |||| Sbjct: 5345 ctccagttgcacaacacccaactataaacggcgtgccaaggagccctttggatcaggccc 5404 Query: 611 agcacccagagccgtacatagcagctaatccaacccggccatctacct 658 |||||||||| || || |||||||| || ||||||| |||||||||| Sbjct: 5405 agcacccagacccatatatagcagccaagccaacccatccatctacct 5452
>gb|AC083841.9| Homo sapiens chromosome 8, clone RP11-706C16, complete sequence Length = 203375 Score = 46.1 bits (23), Expect = 0.17 Identities = 23/23 (100%) Strand = Plus / Plus Query: 466 caggaggaggcagggccagactg 488 ||||||||||||||||||||||| Sbjct: 93467 caggaggaggcagggccagactg 93489
>ref|NM_116284.4| Arabidopsis thaliana asparaginase AT4G00590 mRNA, complete cds Length = 1413 Score = 42.1 bits (21), Expect = 2.6 Identities = 51/61 (83%) Strand = Plus / Minus Query: 560 cacaacacccaattacaaatggtgtaccaaatggtcctttggatgaagcccagcacccag 619 ||||||| |||| || |||||| | |||||||||||||| || || |||||||| |||| Sbjct: 859 cacaacatccaactagaaatggagctccaaatggtcctttagaggatgcccagcaaccag 800 Query: 620 a 620 | Sbjct: 799 a 799
>gb|AY080861.1| Arabidopsis thaliana At4g00590 mRNA sequence Length = 1425 Score = 42.1 bits (21), Expect = 2.6 Identities = 51/61 (83%) Strand = Plus / Minus Query: 560 cacaacacccaattacaaatggtgtaccaaatggtcctttggatgaagcccagcacccag 619 ||||||| |||| || |||||| | |||||||||||||| || || |||||||| |||| Sbjct: 876 cacaacatccaactagaaatggagctccaaatggtcctttagaggatgcccagcaaccag 817 Query: 620 a 620 | Sbjct: 816 a 816
>emb|AL161472.2|ATCHRIV2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 2 Length = 197975 Score = 42.1 bits (21), Expect = 2.6 Identities = 51/61 (83%) Strand = Plus / Minus Query: 560 cacaacacccaattacaaatggtgtaccaaatggtcctttggatgaagcccagcacccag 619 ||||||| |||| || |||||| | |||||||||||||| || || |||||||| |||| Sbjct: 60894 cacaacatccaactagaaatggagctccaaatggtcctttagaggatgcccagcaaccag 60835 Query: 620 a 620 | Sbjct: 60834 a 60834
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 468 ggaggaggcagggccagactgtgac 492 ||||||||||||| ||||||||||| Sbjct: 848508 ggaggaggcaggggcagactgtgac 848532
>emb|BX827980.1|CNS0A32D Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH41ZC04 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1322 Score = 42.1 bits (21), Expect = 2.6 Identities = 51/61 (83%) Strand = Plus / Minus Query: 560 cacaacacccaattacaaatggtgtaccaaatggtcctttggatgaagcccagcacccag 619 ||||||| |||| || |||||| | |||||||||||||| || || |||||||| |||| Sbjct: 859 cacaacatccaactagaaatggagctccaaatggtcctttagaggatgcccagcaaccag 800 Query: 620 a 620 | Sbjct: 799 a 799
>gb|AF058919.2|F6N23 Arabidopsis thaliana BAC F6N23 Length = 91849 Score = 42.1 bits (21), Expect = 2.6 Identities = 51/61 (83%) Strand = Plus / Minus Query: 560 cacaacacccaattacaaatggtgtaccaaatggtcctttggatgaagcccagcacccag 619 ||||||| |||| || |||||| | |||||||||||||| || || |||||||| |||| Sbjct: 42020 cacaacatccaactagaaatggagctccaaatggtcctttagaggatgcccagcaaccag 41961 Query: 620 a 620 | Sbjct: 41960 a 41960 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,157,487 Number of Sequences: 3902068 Number of extensions: 6157487 Number of successful extensions: 121734 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 121625 Number of HSP's gapped (non-prelim): 99 length of query: 749 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 726 effective length of database: 17,143,297,704 effective search space: 12446034133104 effective search space used: 12446034133104 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)
