ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal13f13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF082693.1|AF082693 Fundulus heteroclitus clone FHGA7 lactate... 44 0.13
2gb|AF082692.1|AF082692 Fundulus heteroclitus clone FHGA6 lactate... 44 0.13
3gb|U59854.1|FHU59854 Fundulus heteroclitus lactate dehydrogenase... 44 0.13
4gb|U59853.1|FHU59853 Fundulus heteroclitus lactate dehydrogenase... 44 0.13
5gb|U59843.1|FHU59843 Fundulus heteroclitus lactate dehydrogenase... 44 0.13
6gb|U59841.1|FHU59841 Fundulus heteroclitus lactate dehydrogenase... 44 0.13
7gb|U59837.1|FHU59837 Fundulus heteroclitus lactate dehydrogenase... 44 0.13
8gb|U59836.1|FHU59836 Fundulus heteroclitus lactate dehydrogenase... 44 0.13
9gb|U59835.1|FHU59835 Fundulus heteroclitus lactate dehydrogenase... 44 0.13
10gb|U59834.1|FHU59834 Fundulus heteroclitus lactate dehydrogenase... 44 0.13
11gb|U59833.1|FHU59833 Fundulus heteroclitus lactate dehydrogenase... 44 0.13
12gb|AC147462.2| Oryza sativa (japonica cultivar-group) chromosome... 42 0.51
13gb|U49830.2| Caenorhabditis elegans cosmid C33F10, complete sequ... 42 0.51
14dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.51
15gb|AE014851.1| Plasmodium falciparum 3D7 chromosome 12, section ... 40 2.0
16gb|AC135915.2| Oryza sativa (japonica cultivar-group) chromosome... 40 2.0
17gb|AC122805.4| Mus musculus BAC clone RP23-296O23 from 3, comple... 40 2.0
18gb|AY177248.1| Oryctolagus cuniculus whey acidic protein (WAP) g... 40 2.0
19gb|AC112800.6| Rattus norvegicus X BAC CH230-275F1 (Children's H... 40 2.0
20emb|CR937191.1| Single read from an extremity of a cDNA clone ma... 40 2.0
21emb|CR354438.9| Zebrafish DNA sequence from clone CH211-243G16 i... 40 2.0
22emb|BX276114.6| Zebrafish DNA sequence from clone CH211-176L11 i... 40 2.0
23gb|AC154642.2| Mus musculus BAC clone RP23-277C14 from chromosom... 40 2.0
24emb|BX322622.10| Zebrafish DNA sequence from clone DKEYP-14D3 in... 40 2.0
25gb|AC079384.26| Homo sapiens 12 BAC RP11-148B3 (Roswell Park Can... 40 2.0
26emb|BX248242.5| Zebrafish DNA sequence from clone BUSM1-205D10 i... 40 2.0
27emb|AL691516.5| Zebrafish DNA sequence from clone BUSM1-116L04 i... 40 2.0
28gb|AC132143.3| Mus musculus BAC clone RP23-20J10 from 3, complet... 40 2.0
29ref|XM_634273.1| Dictyostelium discoideum hypothetical protein (... 38 8.0
30gb|AC025353.9| Mus musculus chromosome 9, clone RP23-93E19, comp... 38 8.0
31gb|AC139300.4| Mus musculus BAC clone RP23-258L8 from chromosome... 38 8.0
32gb|AC133204.3| Mus musculus BAC clone RP23-106N3 from chromosome... 38 8.0
33gb|AC125213.3| Mus musculus BAC clone RP23-136A14 from 7, comple... 38 8.0
34gb|AC116567.5| Mus musculus BAC clone RP23-1M9 from 5, complete ... 38 8.0
35emb|AL589677.6| Human DNA sequence from clone RP11-12P4 on chrom... 38 8.0
36emb|AL390119.25| Human DNA sequence from clone RP11-403P14 on ch... 38 8.0
37emb|AL357569.12| Human DNA sequence from clone RP13-137O14 on ch... 38 8.0
38emb|AL109940.18|HSJ421D16 Human DNA sequence from clone RP3-421D... 38 8.0
39emb|Y18363.1|SDY18363 Streptococcus dysgalactiae subsp. equisimi... 38 8.0
40emb|BX294154.1| Pirellula sp. strain 1 complete genome; segment ... 38 8.0
41emb|AL929357.1|PFA929357 Plasmodium falciparum strain 3D7, chrom... 38 8.0
42emb|AL808023.3| Mouse DNA sequence from clone RP23-32B6 on chrom... 38 8.0
43emb|AL023893.1|DMC132E8 Drosophila melanogaster cosmid clone 132E8 38 8.0
44emb|AL603793.4| Mouse DNA sequence from clone RP23-131A14 on chr... 38 8.0
45gb|AC104141.8| Drosophila melanogaster X BAC RP98-9H15 (Roswell ... 38 8.0
46gb|AC025264.16| Homo sapiens 12 BAC RP11-704P17 (Roswell Park Ca... 38 8.0
47gb|AC073651.23| Homo sapiens 12 BAC RP11-6B19 (Roswell Park Canc... 38 8.0
48gb|AC104288.4| Drosophila melanogaster X BAC RP98-30G24 (Roswell... 38 8.0
49gb|AC152718.6| Mus musculus BAC clone RP24-432B3 from chromosome... 38 8.0
50emb|BX284646.4| Zebrafish DNA sequence from clone CH211-49J11 in... 38 8.0
51gb|AC109129.3| Homo sapiens 3 BAC RP11-784B9 (Roswell Park Cance... 38 8.0
52gb|AC102106.14| Mus musculus chromosome 18, clone RP23-92B24, co... 38 8.0
53dbj|BS000080.1| Pan troglodytes chromosome 22 clone:PTB-090L14, ... 38 8.0
54dbj|BS000079.1| Pan troglodytes chromosome 22 clone:RP43-047O12,... 38 8.0
55gb|AE003420.2| Drosophila melanogaster chromosome X, section 4 o... 38 8.0
56gb|AC153433.6| Mus musculus 10 BAC RP23-69K22 (Roswell Park Canc... 38 8.0
57dbj|AP000959.3| Homo sapiens genomic DNA, chromosome 21 clone:RP... 38 8.0
58dbj|AP001684.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 38 8.0
59gb|AC172744.2| Medicago truncatula chromosome 2 BAC clone mth2-3... 38 8.0
60emb|AL954144.6| Zebrafish DNA sequence from clone CH211-206L15, ... 38 8.0
61emb|CR848818.10| Zebrafish DNA sequence from clone DKEY-38O19 in... 38 8.0
62gb|U59839.1|FHU59839 Fundulus heteroclitus lactate dehydrogenase... 38 8.0
63emb|AL672195.9| Mouse DNA sequence from clone RP23-468E16 on chr... 38 8.0 
>gb|AF082693.1|AF082693 Fundulus heteroclitus clone FHGA7 lactate dehydrogenase B gene,
          promoter
          Length = 309

 Score = 44.1 bits (22), Expect = 0.13
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                
Query: 58 tcgatgatgatgatacaaataa 79
          ||||||||||||||||||||||
Sbjct: 54 tcgatgatgatgatacaaataa 33
to top
>gb|AF082692.1|AF082692 Fundulus heteroclitus clone FHGA6 lactate dehydrogenase B gene,
          promoter
          Length = 315

 Score = 44.1 bits (22), Expect = 0.13
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                
Query: 58 tcgatgatgatgatacaaataa 79
          ||||||||||||||||||||||
Sbjct: 54 tcgatgatgatgatacaaataa 33
to top
>gb|U59854.1|FHU59854 Fundulus heteroclitus lactate dehydrogenase-B (Ldh-B) gene, 5'UTR
          Length = 1039

 Score = 44.1 bits (22), Expect = 0.13
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 58  tcgatgatgatgatacaaataa 79
           ||||||||||||||||||||||
Sbjct: 804 tcgatgatgatgatacaaataa 783
to top
>gb|U59853.1|FHU59853 Fundulus heteroclitus lactate dehydrogenase-B (Ldh-B) gene, 5'UTR
          Length = 1041

 Score = 44.1 bits (22), Expect = 0.13
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 58  tcgatgatgatgatacaaataa 79
           ||||||||||||||||||||||
Sbjct: 806 tcgatgatgatgatacaaataa 785
to top
>gb|U59843.1|FHU59843 Fundulus heteroclitus lactate dehydrogenase-B (Ldh-B) gene, 5'UTR
          Length = 1040

 Score = 44.1 bits (22), Expect = 0.13
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 58  tcgatgatgatgatacaaataa 79
           ||||||||||||||||||||||
Sbjct: 806 tcgatgatgatgatacaaataa 785
to top
>gb|U59841.1|FHU59841 Fundulus heteroclitus lactate dehydrogenase-B (Ldh-B) gene, 5'UTR
          Length = 1084

 Score = 44.1 bits (22), Expect = 0.13
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 58  tcgatgatgatgatacaaataa 79
           ||||||||||||||||||||||
Sbjct: 844 tcgatgatgatgatacaaataa 823
to top
>gb|U59837.1|FHU59837 Fundulus heteroclitus lactate dehydrogenase-B (Ldh-B) gene, 5'UTR
          Length = 1042

 Score = 44.1 bits (22), Expect = 0.13
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 58  tcgatgatgatgatacaaataa 79
           ||||||||||||||||||||||
Sbjct: 808 tcgatgatgatgatacaaataa 787
to top
>gb|U59836.1|FHU59836 Fundulus heteroclitus lactate dehydrogenase-B (Ldh-B) gene, 5'UTR
          Length = 1039

 Score = 44.1 bits (22), Expect = 0.13
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 58  tcgatgatgatgatacaaataa 79
           ||||||||||||||||||||||
Sbjct: 805 tcgatgatgatgatacaaataa 784
to top
>gb|U59835.1|FHU59835 Fundulus heteroclitus lactate dehydrogenase-B (Ldh-B) gene, 5'UTR
          Length = 1038

 Score = 44.1 bits (22), Expect = 0.13
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 58  tcgatgatgatgatacaaataa 79
           ||||||||||||||||||||||
Sbjct: 804 tcgatgatgatgatacaaataa 783
to top
>gb|U59834.1|FHU59834 Fundulus heteroclitus lactate dehydrogenase-B (Ldh-B) gene, 5'UTR
          Length = 1037

 Score = 44.1 bits (22), Expect = 0.13
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 58  tcgatgatgatgatacaaataa 79
           ||||||||||||||||||||||
Sbjct: 802 tcgatgatgatgatacaaataa 781
to top
>gb|U59833.1|FHU59833 Fundulus heteroclitus lactate dehydrogenase-B (Ldh-B) gene, 5'UTR
          Length = 1037

 Score = 44.1 bits (22), Expect = 0.13
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 58  tcgatgatgatgatacaaataa 79
           ||||||||||||||||||||||
Sbjct: 802 tcgatgatgatgatacaaataa 781
to top
>gb|AC147462.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1110B01,
             complete sequence
          Length = 160142

 Score = 42.1 bits (21), Expect = 0.51
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 58    tcgatgatgatgatacaaata 78
             |||||||||||||||||||||
Sbjct: 28388 tcgatgatgatgatacaaata 28408
to top
>gb|U49830.2| Caenorhabditis elegans cosmid C33F10, complete sequence
          Length = 46463

 Score = 42.1 bits (21), Expect = 0.51
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 59    cgatgatgatgatacaaataa 79
             |||||||||||||||||||||
Sbjct: 44151 cgatgatgatgatacaaataa 44171
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 0.51
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 58       tcgatgatgatgatacaaata 78
                |||||||||||||||||||||
Sbjct: 21435305 tcgatgatgatgatacaaata 21435325



 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 143      ccgatggacagacggatggc 162
                ||||||||||||||||||||
Sbjct: 13146461 ccgatggacagacggatggc 13146442



 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 143      ccgatggacagacggatggc 162
                ||||||||||||||||||||
Sbjct: 13143677 ccgatggacagacggatggc 13143658
to top
>gb|AE014851.1| Plasmodium falciparum 3D7 chromosome 12, section 8 of 9 of the complete
             sequence
          Length = 251762

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 61    atgatgatgatacaaataaa 80
             ||||||||||||||||||||
Sbjct: 91207 atgatgatgatacaaataaa 91226
to top
>gb|AC135915.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone
              OSJNBa0082F22, complete sequence
          Length = 176038

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 143    ccgatggacagacggatggc 162
              ||||||||||||||||||||
Sbjct: 109238 ccgatggacagacggatggc 109219



 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 143    ccgatggacagacggatggc 162
              ||||||||||||||||||||
Sbjct: 106454 ccgatggacagacggatggc 106435
to top
>gb|AC122805.4| Mus musculus BAC clone RP23-296O23 from 3, complete sequence
          Length = 202733

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 118   gtacaagtacacatgcatat 137
             ||||||||||||||||||||
Sbjct: 22438 gtacaagtacacatgcatat 22419
to top
>gb|AY177248.1| Oryctolagus cuniculus whey acidic protein (WAP) gene, upstream
           regulatory region
          Length = 2560

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 41  gagggcatctcgctcgctcg 60
           ||||||||||||||||||||
Sbjct: 755 gagggcatctcgctcgctcg 774
to top
>gb|AC112800.6| Rattus norvegicus X BAC CH230-275F1 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 147560

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 60    gatgatgatgatacaaataa 79
             ||||||||||||||||||||
Sbjct: 26076 gatgatgatgatacaaataa 26057
to top
>emb|CR937191.1| Single read from an extremity of a cDNA clone made from Aedes
           aegypti total adult females. 5-prime end of clone
           KW0AAB2YK24AAM1 from strain Liverpool of Aedes aegypti
           (yellow fever mosquito)
          Length = 908

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 58  tcgatgatgatgatacaaat 77
           ||||||||||||||||||||
Sbjct: 318 tcgatgatgatgatacaaat 337
to top
>emb|CR354438.9| Zebrafish DNA sequence from clone CH211-243G16 in linkage group 8,
             complete sequence
          Length = 136324

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 64    atgatgatacaaataaacacacaa 87
             ||||||| ||||||||||||||||
Sbjct: 58180 atgatgaaacaaataaacacacaa 58203
to top
>emb|BX276114.6| Zebrafish DNA sequence from clone CH211-176L11 in linkage group 20
              Contains the kit gene for kit receptor, the 3' end of the
              pdgfra gene for platelet derived growth factor receptor
              alpha and a CpG island, complete sequence
          Length = 134212

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 67     atgatacaaataaacacaca 86
              ||||||||||||||||||||
Sbjct: 114632 atgatacaaataaacacaca 114613
to top
>gb|AC154642.2| Mus musculus BAC clone RP23-277C14 from chromosome 14, complete
             sequence
          Length = 211315

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 20    tacattgcgcacagctagggagag 43
             |||||||| |||||||||||||||
Sbjct: 81357 tacattgctcacagctagggagag 81380
to top
>emb|BX322622.10| Zebrafish DNA sequence from clone DKEYP-14D3 in linkage group 8, complete
              sequence
          Length = 162365

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 64     atgatgatacaaataaacacacaa 87
              ||||||| ||||||||||||||||
Sbjct: 158836 atgatgaaacaaataaacacacaa 158859
to top
>gb|AC079384.26| Homo sapiens 12 BAC RP11-148B3 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 180555

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 60    gatgatgatgatacaaataa 79
             ||||||||||||||||||||
Sbjct: 61129 gatgatgatgatacaaataa 61110
to top
>emb|BX248242.5| Zebrafish DNA sequence from clone BUSM1-205D10 in linkage group 20,
             complete sequence
          Length = 104779

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 67    atgatacaaataaacacaca 86
             ||||||||||||||||||||
Sbjct: 10904 atgatacaaataaacacaca 10885
to top
>emb|AL691516.5| Zebrafish DNA sequence from clone BUSM1-116L04 in linkage group 20,
             complete sequence
          Length = 80250

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 67    atgatacaaataaacacaca 86
             ||||||||||||||||||||
Sbjct: 63793 atgatacaaataaacacaca 63774
to top
>gb|AC132143.3| Mus musculus BAC clone RP23-20J10 from 3, complete sequence
          Length = 205880

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 118    gtacaagtacacatgcatat 137
              ||||||||||||||||||||
Sbjct: 125910 gtacaagtacacatgcatat 125891
to top
>ref|XM_634273.1| Dictyostelium discoideum hypothetical protein (DDB0204997), partial
           mRNA
          Length = 1890

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 61  atgatgatgatacaaataa 79
           |||||||||||||||||||
Sbjct: 554 atgatgatgatacaaataa 572
to top
>gb|AC025353.9| Mus musculus chromosome 9, clone RP23-93E19, complete sequence
          Length = 274853

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 70   atacaaataaacacacaaa 88
            |||||||||||||||||||
Sbjct: 6807 atacaaataaacacacaaa 6825
to top
>gb|AC139300.4| Mus musculus BAC clone RP23-258L8 from chromosome 18, complete sequence
          Length = 209617

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 64     atgatgatacaaataaacacaca 86
              ||||||||||| |||||||||||
Sbjct: 152417 atgatgatacacataaacacaca 152395
to top
>gb|AC133204.3| Mus musculus BAC clone RP23-106N3 from chromosome 5, complete sequence
          Length = 224181

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 119   tacaagtacacatgcatat 137
             |||||||||||||||||||
Sbjct: 52160 tacaagtacacatgcatat 52142
to top
>gb|AC125213.3| Mus musculus BAC clone RP23-136A14 from 7, complete sequence
          Length = 194309

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 119   tacaagtacacatgcatat 137
             |||||||||||||||||||
Sbjct: 94097 tacaagtacacatgcatat 94115
to top
>gb|AC116567.5| Mus musculus BAC clone RP23-1M9 from 5, complete sequence
          Length = 206570

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 119    tacaagtacacatgcatat 137
              |||||||||||||||||||
Sbjct: 109745 tacaagtacacatgcatat 109763
to top
>emb|AL589677.6| Human DNA sequence from clone RP11-12P4 on chromosome X, complete
             sequence
          Length = 129422

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 61    atgatgatgatacaaataa 79
             |||||||||||||||||||
Sbjct: 46876 atgatgatgatacaaataa 46858
to top
>emb|AL390119.25| Human DNA sequence from clone RP11-403P14 on chromosome 1 Contains the 3'
              end of the PBX1 gene for pre-B-cell leukemia transcription
              factor 1 and a ribosomal protein L35a (RPL35A) pseudogene,
              complete sequence
          Length = 197482

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 69     gatacaaataaacacacaa 87
              |||||||||||||||||||
Sbjct: 142281 gatacaaataaacacacaa 142263
to top
>emb|AL357569.12| Human DNA sequence from clone RP13-137O14 on chromosome X, complete
            sequence
          Length = 92522

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 66   gatgatacaaataaacaca 84
            |||||||||||||||||||
Sbjct: 6786 gatgatacaaataaacaca 6768
to top
>emb|AL109940.18|HSJ421D16 Human DNA sequence from clone RP3-421D16 on chromosome 6q26-27 Contains
             part of the gene for smooth muscle cell associated protein
             2 (SMAP2) or secreted modular calcium binding protein 2
             (SMOC2) and two CpG islands, complete sequence
          Length = 110603

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 23    attgcgcacagctagggagaggg 45
             ||||| |||||||||||||||||
Sbjct: 77044 attgctcacagctagggagaggg 77022
to top
>emb|Y18363.1|SDY18363 Streptococcus dysgalactiae subsp. equisimilis genomic sequence with
            vir-regulon like properties, genes nrd, mgc, emm, rel
          Length = 4826

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 32   agctagggagagggcatct 50
            |||||||||||||||||||
Sbjct: 4319 agctagggagagggcatct 4301
to top
>emb|BX294154.1| Pirellula sp. strain 1 complete genome; segment 22/24
          Length = 299050

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 44    ggcatctcgctcgctcgat 62
             |||||||||||||||||||
Sbjct: 67178 ggcatctcgctcgctcgat 67196
to top
>emb|AL929357.1|PFA929357 Plasmodium falciparum strain 3D7, chromosome 9; segment 3/5
          Length = 341050

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 61     atgatgatgatacaaataa 79
              |||||||||||||||||||
Sbjct: 152048 atgatgatgatacaaataa 152030
to top
>emb|AL808023.3| Mouse DNA sequence from clone RP23-32B6 on chromosome 11 Contains the
             3' end of the Ube2g1 gene for ubiquitin-conjugating enzyme
             E2G 1 (UBC7 homolog, C. elegans), the 5' end of the Ankfy1
             gene for ankyrin repeat and FYVE domain containing 1 and a
             CpG island, complete sequence
          Length = 95661

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 60    gatgatgatgatacaaataaaca 82
             ||||||||||||| |||||||||
Sbjct: 18281 gatgatgatgatagaaataaaca 18259
to top
>emb|AL023893.1|DMC132E8 Drosophila melanogaster cosmid clone 132E8
          Length = 39910

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 16    aatttacattgcgcacagc 34
             |||||||||||||||||||
Sbjct: 21485 aatttacattgcgcacagc 21467
to top
>emb|AL603793.4| Mouse DNA sequence from clone RP23-131A14 on chromosome 11, complete
              sequence
          Length = 201815

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 70     atacaaataaacacacaaa 88
              |||||||||||||||||||
Sbjct: 155673 atacaaataaacacacaaa 155655
to top
>gb|AC104141.8| Drosophila melanogaster X BAC RP98-9H15 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 181360

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 16    aatttacattgcgcacagc 34
             |||||||||||||||||||
Sbjct: 60906 aatttacattgcgcacagc 60888
to top
>gb|AC025264.16| Homo sapiens 12 BAC RP11-704P17 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 193626

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 71     tacaaataaacacacaaag 89
              |||||||||||||||||||
Sbjct: 100653 tacaaataaacacacaaag 100671
to top
>gb|AC073651.23| Homo sapiens 12 BAC RP11-6B19 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 165565

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 1      accttgtgctcaattaatt 19
              |||||||||||||||||||
Sbjct: 163746 accttgtgctcaattaatt 163728
to top
>gb|AC104288.4| Drosophila melanogaster X BAC RP98-30G24 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 164252

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 16     aatttacattgcgcacagc 34
              |||||||||||||||||||
Sbjct: 120421 aatttacattgcgcacagc 120403
to top
>gb|AC152718.6| Mus musculus BAC clone RP24-432B3 from chromosome 9, complete sequence
          Length = 174264

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 70    atacaaataaacacacaaa 88
             |||||||||||||||||||
Sbjct: 96811 atacaaataaacacacaaa 96829
to top
>emb|BX284646.4| Zebrafish DNA sequence from clone CH211-49J11 in linkage group 5,
             complete sequence
          Length = 182774

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 74    aaataaacacacaaagtac 92
             |||||||||||||||||||
Sbjct: 42959 aaataaacacacaaagtac 42977
to top
>gb|AC109129.3| Homo sapiens 3 BAC RP11-784B9 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 181158

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 70     atacaaataaacacacaaa 88
              |||||||||||||||||||
Sbjct: 113631 atacaaataaacacacaaa 113613
to top
>gb|AC102106.14| Mus musculus chromosome 18, clone RP23-92B24, complete sequence
          Length = 230823

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 65    tgatgatacaaataaacac 83
             |||||||||||||||||||
Sbjct: 15179 tgatgatacaaataaacac 15161
to top
>dbj|BS000080.1| Pan troglodytes chromosome 22 clone:PTB-090L14, map 22, complete
            sequences
          Length = 194210

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 70   atacaaataaacacacaaa 88
            |||||||||||||||||||
Sbjct: 8173 atacaaataaacacacaaa 8155
to top
>dbj|BS000079.1| Pan troglodytes chromosome 22 clone:RP43-047O12, map 22, complete
              sequences
          Length = 158933

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 70     atacaaataaacacacaaa 88
              |||||||||||||||||||
Sbjct: 106939 atacaaataaacacacaaa 106921
to top
>gb|AE003420.2| Drosophila melanogaster chromosome X, section 4 of 74 of the complete
              sequence
          Length = 308311

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 16     aatttacattgcgcacagc 34
              |||||||||||||||||||
Sbjct: 231741 aatttacattgcgcacagc 231723
to top
>gb|AC153433.6| Mus musculus 10 BAC RP23-69K22 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 200061

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 64    atgatgatacaaataaaca 82
             |||||||||||||||||||
Sbjct: 87556 atgatgatacaaataaaca 87574
to top
>dbj|AP000959.3| Homo sapiens genomic DNA, chromosome 21 clone:RP11-797G14, complete
             sequence
          Length = 201112

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 70    atacaaataaacacacaaa 88
             |||||||||||||||||||
Sbjct: 13242 atacaaataaacacacaaa 13224
to top
>dbj|AP001684.1| Homo sapiens genomic DNA, chromosome 21q, section 28/105
          Length = 340000

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 70     atacaaataaacacacaaa 88
              |||||||||||||||||||
Sbjct: 287438 atacaaataaacacacaaa 287420
to top
>gb|AC172744.2| Medicago truncatula chromosome 2 BAC clone mth2-33p17, complete
             sequence
          Length = 116124

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 116   acgtacaagtacacatgca 134
             |||||||||||||||||||
Sbjct: 23399 acgtacaagtacacatgca 23417
to top
>emb|AL954144.6| Zebrafish DNA sequence from clone CH211-206L15, complete sequence
          Length = 156893

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 143   ccgatggacagacggatgg 161
             |||||||||||||||||||
Sbjct: 91971 ccgatggacagacggatgg 91989
to top
>emb|CR848818.10| Zebrafish DNA sequence from clone DKEY-38O19 in linkage group 16,
             complete sequence
          Length = 208738

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 68    tgatacaaataaacacaca 86
             |||||||||||||||||||
Sbjct: 54675 tgatacaaataaacacaca 54693
to top
>gb|U59839.1|FHU59839 Fundulus heteroclitus lactate dehydrogenase-B (Ldh-B) gene, 5'UTR
          Length = 1113

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 58  tcgatgatgatgatacaaataaa 80
           ||||||||||||| |||||||||
Sbjct: 873 tcgatgatgatgacacaaataaa 851
to top
>emb|AL672195.9| Mouse DNA sequence from clone RP23-468E16 on chromosome 9, complete
             sequence
          Length = 182503

 Score = 38.2 bits (19), Expect = 8.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 70    atacaaataaacacacaaa 88
             |||||||||||||||||||
Sbjct: 13444 atacaaataaacacacaaa 13426


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,750,339
Number of Sequences: 3902068
Number of extensions: 1750339
Number of successful extensions: 142387
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 142130
Number of HSP's gapped (non-prelim): 257
length of query: 165
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 143
effective length of database: 17,147,199,772
effective search space: 2452049567396
effective search space used: 2452049567396
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top