>STE12_KLULA (Q08400) Protein STE12|
          Length = 666

 Score = 34.7 bits (78), Expect = 0.17
 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = +3

Query: 78  HMXTNVLHLPSTACATVSQIISALSTQIGSEDCEEDVRSYNAFLCPTNFRATPKMRAF-V 254
           +M  N+L +  +    V+ ++     Q  S D   DV S    + P+N+R+TPK   F +
Sbjct: 508 YMFCNMLAVDPSLNMGVNPVVDPFYGQNHSMDVAHDVYSPQEVVYPSNYRSTPKAAYFNM 567

Query: 255 RSPWSSVHAKATAPPSTRN 311
           RSP    + +   PPS  N
Sbjct: 568 RSP----YGRNFPPPSAMN 582

>BSN_HUMAN (Q9UPA5) Bassoon protein (Zinc-finger protein 231)|
          Length = 3925

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
 Frame = +1

Query: 88   PMSFICRQRHVLQLARSSPLSP--RKLAQRIVRKMSDPTMRSSAPQTSAQRQR*EP-LSG 258
            P     RQ    Q  +   L P  + L Q  +++ S PT R SAP  S    + +P  S 
Sbjct: 3767 PSGAASRQPQTQQQQQGLGLQPPQQALTQARLQQQSQPTTRGSAPAASQPAGKPQPGPST 3826

Query: 259  ALGPVYTPRPRPRRAQGT 312
            A GP     PR  +  G+
Sbjct: 3827 ATGPQPAGPPRAEQTNGS 3844

>YNR6_YEAST (P53882) Hypothetical 67.4 kDa protein in RPS3-PSD1 intergenic|
           region
          Length = 636

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 21/72 (29%), Positives = 36/72 (50%)
 Frame = +3

Query: 192 SYNAFLCPTNFRATPKMRAFVRSPWSSVHAKATAPPSTRNLAIRFFTGFSSASMISDWSL 371
           S  +F   T    +    + + SP +  +   T P S+RN +  F++  SS S  +D+S 
Sbjct: 218 SATSFQISTTSELSSSWFSTISSPSTISNKDTTCPSSSRNTSTSFYS--SSLSSTNDFST 275

Query: 372 LDSSPRTKLSPT 407
           +  S  +KLSP+
Sbjct: 276 ISKS--SKLSPS 285

>BSN_RAT (O88778) Bassoon protein|
          Length = 3937

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = +1

Query: 163  AQRIVRKMSDPTMRSSAPQTSAQRQR*EPLSGALGPVYTPRPRPRRAQGTSPYGFSQVSL 342
            +Q  +++ S PT RS+AP  S    + +P     GP   P P+P         G S+ + 
Sbjct: 3808 SQARLQQQSQPTTRSTAPAASHPAGKPQP-----GPTTAPGPQPAGLPRAEQAGSSKPAA 3862

Query: 343  RLP 351
            + P
Sbjct: 3863 KAP 3865

>Y1R1_DROME (P16424) Hypothetical 50 kDa protein in type I retrotransposable|
           element R1DM (ORF 1)
          Length = 471

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 197 QCVPLPHKLPRNAKDESLCQEPLVQCTRQGHGPAEHKEP 313
           +CV   HK+    + ES+C+    QC +QGH  A+ + P
Sbjct: 401 RCVGFDHKVSECRQKESVCR----QCGQQGHTAAKCQNP 435

>AFF1_HUMAN (P51825) AF4/FMR2 family member 1 (AF-4 protein) (Proto-oncogene|
           AF4) (FEL protein)
          Length = 1210

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 11/77 (14%)
 Frame = +3

Query: 219 NFRATPKMRAFVRSPWSSVHAKATAPPSTRNLAIRFF--TGFSS---------ASMISDW 365
           N    PKM      P  S+HAK+  PP +++L        GF S         A      
Sbjct: 128 NISHNPKMAQPRTEPMPSLHAKSCGPPDSQHLTQDRLGQEGFGSSHHKKGDRRADGDHCA 187

Query: 366 SLLDSSPRTKLSPTLVL 416
           S+ DS+P  +LSP + L
Sbjct: 188 SVTDSAPERELSPLISL 204

>ZN434_HUMAN (Q9NX65) Zinc finger protein 434|
          Length = 485

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 21/77 (27%), Positives = 34/77 (44%)
 Frame = -1

Query: 344 RRETCEKPYGEVPCARRGRGLGVYTGPRAPDKGSHLWRCAEVCGAEERIVGSDIFLTIL* 165
           R  T EKPY  + C +R      ++  R    G   ++CA VCG   +I  +    +   
Sbjct: 385 RTHTGEKPYQCIVCGKRFNNSSQFSAHRRIHTGESPYKCA-VCG---KIFNNSSHFS--- 437

Query: 164 ANLRGESGDDLANCSTC 114
           A+ +  +G+    CS C
Sbjct: 438 AHRKTHTGEKPYRCSHC 454


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,946,475
Number of Sequences: 219361
Number of extensions: 2072874
Number of successful extensions: 6429
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6424
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4200495993
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)