ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal12p11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_463949.1| Oryza sativa (japonica cultivar-group), mRNA 222 9e-55
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 222 9e-55
3dbj|AP004885.3| Oryza sativa (japonica cultivar-group) genomic D... 222 9e-55
4dbj|AP006754.1| Oryza sativa (japonica cultivar-group) genomic D... 222 9e-55
5gb|AY596556.1| Saccharum officinarum clone SCJFLR1013D08, comple... 194 2e-46
6gb|AY107844.1| Zea mays PCO146552 mRNA sequence 86 1e-13
7dbj|AK058547.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 3e-08
8gb|AC093718.3| Homo sapiens 12 BAC RP11-742C6 (Roswell Park Canc... 48 0.030
9emb|AL050348.21|HSDJ447F3 Human DNA sequence from clone RP3-447F... 44 0.46
10gb|AF224262.1|AF224262 Heterodontus francisci HoxA10 (HoxA10), H... 44 0.46
11gb|AC169506.1| Mus musculus BAC clone RP23-417L6 from chromosome... 42 1.8
12emb|BX649550.6| Zebrafish DNA sequence from clone CH211-120K2 in... 42 1.8
13gb|AC008517.7| Homo sapiens chromosome 5 clone CTC-458G6, comple... 42 1.8
14emb|BX663606.4| Zebrafish DNA sequence from clone CH211-181L5 in... 42 1.8
15emb|AL591510.11| Zebrafish DNA sequence from clone BUSM1-228E24 ... 42 1.8
16emb|AL591370.10| Zebrafish DNA sequence from clone BUSM1-52I16 i... 42 1.8
17emb|CT033749.8| Mouse DNA sequence from clone RP23-14N10 on chro... 42 1.8
18ref|XM_520353.1| PREDICTED: Pan troglodytes similar to chromosom... 40 7.3
19gb|BC021261.1| Homo sapiens chromosome 9 open reading frame 116,... 40 7.3
20gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 compl... 40 7.3
21gb|AC113028.15| Mus musculus chromosome 5, clone RP23-205D3, com... 40 7.3
22gb|AC119906.6| Mus musculus chromosome 5, clone RP24-239D13, com... 40 7.3
23gb|AC102566.9| Mus musculus chromosome 9, clone RP23-223D10, com... 40 7.3
24emb|BX950203.15| Zebrafish DNA sequence from clone CH211-108P22,... 40 7.3
25gb|AE004223.1| Vibrio cholerae O1 biovar eltor str. N16961 chrom... 40 7.3
26emb|AL513543.14| Human DNA sequence from clone RP11-343J24 on ch... 40 7.3
27emb|AL359916.8| Human DNA sequence from clone RP11-550O8 on chro... 40 7.3
28emb|AL161452.19| Human DNA sequence from clone RP11-426A6 on chr... 40 7.3
29dbj|AK024007.1| Homo sapiens cDNA FLJ13945 fis, clone Y79AA1000969 40 7.3
30ref|NM_144654.1| Homo sapiens chromosome 9 open reading frame 11... 40 7.3
31gb|AC068870.17| Homo sapiens chromosome , clone RP11-775C24, com... 40 7.3
32ref|XM_693166.1| PREDICTED: Danio rerio similar to hematological... 40 7.3
33gb|AC027808.9| Homo sapiens chromosome 15, clone RP11-351M8, com... 40 7.3
34gb|AY927868.1| Homo sapiens pierce 1 mRNA, complete cds 40 7.3
35gb|AF119150.1|AF119150 Vibrio cholerae Rtx toxin gene cluster, c... 40 7.3
36dbj|AP001746.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 7.3
37dbj|AP001624.1| Homo sapiens genomic DNA, chromosome 21, clone:K... 40 7.3

>ref|XM_463949.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1239

 Score =  222 bits (112), Expect = 9e-55
 Identities = 282/339 (83%)
 Strand = Plus / Minus

                                                                        
Query: 194  ctacaatgcgttcctctgccccacaaacttccgcgcaacgccaaagatgagagcctttgt 253
            |||||||| |||||||||||| ||||| ||||| ||||| || |||||||||||||| ||
Sbjct: 1239 ctacaatgtgttcctctgccctacaaatttccgtgcaacaccgaagatgagagccttggt 1180

                                                                        
Query: 254  caggagcccttggtccagtgtacacgccaaggccacggccccgccgagcacaaggaacct 313
            ||  |||||||| || || || || ||||  || || || || |||||||||||||||||
Sbjct: 1179 caacagcccttgatcaagagtgcaagccagagcaacagctccaccgagcacaaggaacct 1120

                                                                        
Query: 314  cgccatacggtttttcacaggtttctcttcggcttccatgatatctgattggtcactgtt 373
             || |  ||||||||| | ||||||||||| |||||||  |||||||| || ||   |||
Sbjct: 1119 tgctactcggtttttcgcgggtttctcttctgcttccacaatatctgactgatcgtcgtt 1060

                                                                        
Query: 374  ggactccagtcctcggacaaaattgtcaccgaccttggtgttgatccgtgccatcaaggc 433
            ||| |||| ||| || ||||||||||||||||||||||| |||||  | |||||||||||
Sbjct: 1059 ggattccaatccacgaacaaaattgtcaccgaccttggtattgatatgcgccatcaaggc 1000

                                                                        
Query: 434  gctcggcgaaggtggctccccagcanccctggctttctgataggcccggagtccgggttc 493
             ||| | ||   ||||||||||||| | || ||||||||||||||||| ||||| |||||
Sbjct: 999  actctgagacaatggctccccagcagctctcgctttctgataggcccgaagtccaggttc 940

                                                   
Query: 494  gattctcttcacgcatccccacatgccctgccgaatgcc 532
            ||||||||| || || |||||||| ||||||||||||||
Sbjct: 939  gattctctttacacacccccacattccctgccgaatgcc 901



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  222 bits (112), Expect = 9e-55
 Identities = 282/339 (83%)
 Strand = Plus / Plus

                                                                           
Query: 194     ctacaatgcgttcctctgccccacaaacttccgcgcaacgccaaagatgagagcctttgt 253
               |||||||| |||||||||||| ||||| ||||| ||||| || |||||||||||||| ||
Sbjct: 1289442 ctacaatgtgttcctctgccctacaaatttccgtgcaacaccgaagatgagagccttggt 1289501

                                                                           
Query: 254     caggagcccttggtccagtgtacacgccaaggccacggccccgccgagcacaaggaacct 313
               ||  |||||||| || || || || ||||  || || || || |||||||||||||||||
Sbjct: 1289502 caacagcccttgatcaagagtgcaagccagagcaacagctccaccgagcacaaggaacct 1289561

                                                                           
Query: 314     cgccatacggtttttcacaggtttctcttcggcttccatgatatctgattggtcactgtt 373
                || |  ||||||||| | ||||||||||| |||||||  |||||||| || ||   |||
Sbjct: 1289562 tgctactcggtttttcgcgggtttctcttctgcttccacaatatctgactgatcgtcgtt 1289621

                                                                           
Query: 374     ggactccagtcctcggacaaaattgtcaccgaccttggtgttgatccgtgccatcaaggc 433
               ||| |||| ||| || ||||||||||||||||||||||| |||||  | |||||||||||
Sbjct: 1289622 ggattccaatccacgaacaaaattgtcaccgaccttggtattgatatgcgccatcaaggc 1289681

                                                                           
Query: 434     gctcggcgaaggtggctccccagcanccctggctttctgataggcccggagtccgggttc 493
                ||| | ||   ||||||||||||| | || ||||||||||||||||| ||||| |||||
Sbjct: 1289682 actctgagacaatggctccccagcagctctcgctttctgataggcccgaagtccaggttc 1289741

                                                      
Query: 494     gattctcttcacgcatccccacatgccctgccgaatgcc 532
               ||||||||| || || |||||||| ||||||||||||||
Sbjct: 1289742 gattctctttacacacccccacattccctgccgaatgcc 1289780



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>dbj|AP004885.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0575F10
          Length = 150462

 Score =  222 bits (112), Expect = 9e-55
 Identities = 282/339 (83%)
 Strand = Plus / Plus

                                                                          
Query: 194    ctacaatgcgttcctctgccccacaaacttccgcgcaacgccaaagatgagagcctttgt 253
              |||||||| |||||||||||| ||||| ||||| ||||| || |||||||||||||| ||
Sbjct: 120533 ctacaatgtgttcctctgccctacaaatttccgtgcaacaccgaagatgagagccttggt 120592

                                                                          
Query: 254    caggagcccttggtccagtgtacacgccaaggccacggccccgccgagcacaaggaacct 313
              ||  |||||||| || || || || ||||  || || || || |||||||||||||||||
Sbjct: 120593 caacagcccttgatcaagagtgcaagccagagcaacagctccaccgagcacaaggaacct 120652

                                                                          
Query: 314    cgccatacggtttttcacaggtttctcttcggcttccatgatatctgattggtcactgtt 373
               || |  ||||||||| | ||||||||||| |||||||  |||||||| || ||   |||
Sbjct: 120653 tgctactcggtttttcgcgggtttctcttctgcttccacaatatctgactgatcgtcgtt 120712

                                                                          
Query: 374    ggactccagtcctcggacaaaattgtcaccgaccttggtgttgatccgtgccatcaaggc 433
              ||| |||| ||| || ||||||||||||||||||||||| |||||  | |||||||||||
Sbjct: 120713 ggattccaatccacgaacaaaattgtcaccgaccttggtattgatatgcgccatcaaggc 120772

                                                                          
Query: 434    gctcggcgaaggtggctccccagcanccctggctttctgataggcccggagtccgggttc 493
               ||| | ||   ||||||||||||| | || ||||||||||||||||| ||||| |||||
Sbjct: 120773 actctgagacaatggctccccagcagctctcgctttctgataggcccgaagtccaggttc 120832

                                                     
Query: 494    gattctcttcacgcatccccacatgccctgccgaatgcc 532
              ||||||||| || || |||||||| ||||||||||||||
Sbjct: 120833 gattctctttacacacccccacattccctgccgaatgcc 120871



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>dbj|AP006754.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0018H03, complete sequence
          Length = 94450

 Score =  222 bits (112), Expect = 9e-55
 Identities = 282/339 (83%)
 Strand = Plus / Plus

                                                                         
Query: 194   ctacaatgcgttcctctgccccacaaacttccgcgcaacgccaaagatgagagcctttgt 253
             |||||||| |||||||||||| ||||| ||||| ||||| || |||||||||||||| ||
Sbjct: 63471 ctacaatgtgttcctctgccctacaaatttccgtgcaacaccgaagatgagagccttggt 63530

                                                                         
Query: 254   caggagcccttggtccagtgtacacgccaaggccacggccccgccgagcacaaggaacct 313
             ||  |||||||| || || || || ||||  || || || || |||||||||||||||||
Sbjct: 63531 caacagcccttgatcaagagtgcaagccagagcaacagctccaccgagcacaaggaacct 63590

                                                                         
Query: 314   cgccatacggtttttcacaggtttctcttcggcttccatgatatctgattggtcactgtt 373
              || |  ||||||||| | ||||||||||| |||||||  |||||||| || ||   |||
Sbjct: 63591 tgctactcggtttttcgcgggtttctcttctgcttccacaatatctgactgatcgtcgtt 63650

                                                                         
Query: 374   ggactccagtcctcggacaaaattgtcaccgaccttggtgttgatccgtgccatcaaggc 433
             ||| |||| ||| || ||||||||||||||||||||||| |||||  | |||||||||||
Sbjct: 63651 ggattccaatccacgaacaaaattgtcaccgaccttggtattgatatgcgccatcaaggc 63710

                                                                         
Query: 434   gctcggcgaaggtggctccccagcanccctggctttctgataggcccggagtccgggttc 493
              ||| | ||   ||||||||||||| | || ||||||||||||||||| ||||| |||||
Sbjct: 63711 actctgagacaatggctccccagcagctctcgctttctgataggcccgaagtccaggttc 63770

                                                    
Query: 494   gattctcttcacgcatccccacatgccctgccgaatgcc 532
             ||||||||| || || |||||||| ||||||||||||||
Sbjct: 63771 gattctctttacacacccccacattccctgccgaatgcc 63809



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>gb|AY596556.1| Saccharum officinarum clone SCJFLR1013D08, complete sequence
          Length = 1689

 Score =  194 bits (98), Expect = 2e-46
 Identities = 271/329 (82%)
 Strand = Plus / Minus

                                                                        
Query: 189  agatcctacaatgcgttcctctgccccacaaacttccgcgcaacgccaaagatgagagcc 248
            |||| ||||||||  ||||||||||| || || || ||||| ||||| ||||||||||||
Sbjct: 1361 agatgctacaatgtcttcctctgcccgacgaattttcgcgcgacgccgaagatgagagcc 1302

                                                                        
Query: 249  tttgtcaggagcccttggtccagtgtacacgccaaggccacggccccgccgagcacaagg 308
            || || ||||||||||| || || ||||| ||||  || || ||||| ||||| ||||||
Sbjct: 1301 ttcgttaggagcccttgatcaagagtacaggccagagcaactgcccctccgagtacaagg 1242

                                                                        
Query: 309  aacctcgccatacggtttttcacaggtttctcttcggcttccatgatatctgattggtca 368
            ||||| |||| | ||||  || |||| |||||||| ||||||| ||| ||||||| ||| 
Sbjct: 1241 aaccttgccacatggttcctcgcaggcttctcttctgcttccacgatttctgattcgtcg 1182

                                                                        
Query: 369  ctgttggactccagtcctcggacaaaattgtcaccgaccttggtgttgatccgtgccatc 428
            ||||||||||||| |   || |||||||||||||| ||||| || ||||| || ||||||
Sbjct: 1181 ctgttggactccaatgaccgaacaaaattgtcaccaaccttagtattgattcgggccatc 1122

                                                                        
Query: 429  aaggcgctcggcgaaggtggctccccagcanccctggctttctgataggcccggagtccg 488
            ||||| ||| | || | |||| |||| ||| ||||||||| |||||||||||||||||| 
Sbjct: 1121 aaggcactccgtgacgctggcaccccggcagccctggcttcctgataggcccggagtcca 1062

                                         
Query: 489  ggttcgattctcttcacgcatccccacat 517
            || || ||| |||| || |||||||||||
Sbjct: 1061 ggctcaattttctttacacatccccacat 1033



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>gb|AY107844.1| Zea mays PCO146552 mRNA sequence
          Length = 823

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 102/122 (83%)
 Strand = Plus / Minus

                                                                       
Query: 404 gaccttggtgttgatccgtgccatcaaggcgctcggcgaaggtggctccccagcanccct 463
           |||||||||||||||||| ||||||| ||||||| |||| || ||| |||| ||  ||| 
Sbjct: 249 gaccttggtgttgatccgggccatcagggcgctccgcgacggcggcgcccccgcggcccg 190

                                                                       
Query: 464 ggctttctgataggcccggagtccgggttcgattctcttcacgcatccccacatgccctg 523
            || | ||| ||||||||||| || || ||||| ||||||||||| |||||||| |||||
Sbjct: 189 cgcctgctggtaggcccggagccccggctcgatcctcttcacgcacccccacatcccctg 130

             
Query: 524 cc 525
           ||
Sbjct: 129 cc 128



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 58/65 (89%)
 Strand = Plus / Minus

                                                                       
Query: 204 ttcctctgccccacaaacttccgcgcaacgccaaagatgagagcctttgtcaggagccct 263
           ||||||||||| || ||| ||||||| ||||| |||||||||||||| ||||||||||| 
Sbjct: 494 ttcctctgcccgacgaacctccgcgcgacgccgaagatgagagccttggtcaggagcccc 435

                
Query: 264 tggtc 268
           |||||
Sbjct: 434 tggtc 430



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>dbj|AK058547.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-017-C05, full
           insert sequence
          Length = 514

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                       
Query: 194 ctacaatgcgttcctctgccccacaaacttccgcgcaacgccaaagatgagagcctttgt 253
           |||||||| |||||||||||| ||||| ||||| ||||| || |||||||||||||| ||
Sbjct: 70  ctacaatgtgttcctctgccctacaaatttccgtgcaacaccgaagatgagagccttggt 11

             
Query: 254 ca 255
           ||
Sbjct: 10  ca 9



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>gb|AC093718.3| Homo sapiens 12 BAC RP11-742C6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 160904

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 233   gccaaagatgagagcctttgtcaggagc 260
             |||||||| |||||||||||||||||||
Sbjct: 57999 gccaaagaagagagcctttgtcaggagc 58026



 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 49    cctccctctctctcatcgactg 70
             ||||||||||||||||||||||
Sbjct: 98505 cctccctctctctcatcgactg 98484



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>emb|AL050348.21|HSDJ447F3 Human DNA sequence from clone RP3-447F3 on chromosome 20 Contains the
             HNRPA1P3 gene for heterogenous nuclear ribonucleoprotein
             A1 pseudogene 3, the C20orf168 gene for a novel protein
             with Kunitz/Bovine pancreatic trypsin inhibitor domain,
             the WFDC3 gene for WAP four-disulfide core domain 3, the
             C20orf167 gene for a novel protein similar to
             synaptotagmin 1, the UBE2C gene for ubiquitin-conjugating
             enzyme E2 (H10), the TNNC2 gene for fast troponin C2 and
             two CpG islands, complete sequence
          Length = 97385

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 41    ctctgttgcctccctctctctc 62
             ||||||||||||||||||||||
Sbjct: 73600 ctctgttgcctccctctctctc 73621



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>gb|AF224262.1|AF224262 Heterodontus francisci HoxA10 (HoxA10), HoxA9 (HoxA9), HoxA7 (HoxA7),
             HoxA6 (HoxA6), HoxA5 (HoxA5), HoxA4 (HoxA4), HoxA3
             (HoxA3), HoxA2 (HoxA2), and HoxA1 (HoxA1) genes, complete
             cds
          Length = 81196

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 12    cttttccaatgtaaattacatg 33
             ||||||||||||||||||||||
Sbjct: 57975 cttttccaatgtaaattacatg 57996



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>gb|AC169506.1| Mus musculus BAC clone RP23-417L6 from chromosome 17, complete sequence
          Length = 202033

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 178    aggaagatgtcagatcctaca 198
              |||||||||||||||||||||
Sbjct: 170777 aggaagatgtcagatcctaca 170797



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>emb|BX649550.6| Zebrafish DNA sequence from clone CH211-120K2 in linkage group 6,
              complete sequence
          Length = 170472

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 22     gtaaattacatgctttttact 42
              |||||||||||||||||||||
Sbjct: 104611 gtaaattacatgctttttact 104591



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>gb|AC008517.7| Homo sapiens chromosome 5 clone CTC-458G6, complete sequence
          Length = 198942

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 14     tttccaatgtaaattacatgctttt 38
              |||||||||||||||||||| ||||
Sbjct: 170070 tttccaatgtaaattacatgttttt 170094



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>emb|BX663606.4| Zebrafish DNA sequence from clone CH211-181L5 in linkage group 6,
             complete sequence
          Length = 99947

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 22    gtaaattacatgctttttact 42
             |||||||||||||||||||||
Sbjct: 46872 gtaaattacatgctttttact 46852



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>emb|AL591510.11| Zebrafish DNA sequence from clone BUSM1-228E24 in linkage group 6,
             complete sequence
          Length = 99579

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 22    gtaaattacatgctttttact 42
             |||||||||||||||||||||
Sbjct: 36576 gtaaattacatgctttttact 36556



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>emb|AL591370.10| Zebrafish DNA sequence from clone BUSM1-52I16 in linkage group 6,
             complete sequence
          Length = 131033

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 22    gtaaattacatgctttttact 42
             |||||||||||||||||||||
Sbjct: 21976 gtaaattacatgctttttact 21996



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>emb|CT033749.8| Mouse DNA sequence from clone RP23-14N10 on chromosome 17, complete
              sequence
          Length = 212052

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 178    aggaagatgtcagatcctaca 198
              |||||||||||||||||||||
Sbjct: 155832 aggaagatgtcagatcctaca 155812



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>ref|XM_520353.1| PREDICTED: Pan troglodytes similar to chromosome 9 open reading
           frame 116 (LOC464843), mRNA
          Length = 733

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 280 ccaaggccacggccccgccg 299
           ||||||||||||||||||||
Sbjct: 44  ccaaggccacggccccgccg 63



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>gb|BC021261.1| Homo sapiens chromosome 9 open reading frame 116, mRNA (cDNA clone
           MGC:29761 IMAGE:4136397), complete cds
          Length = 847

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 280 ccaaggccacggccccgccg 299
           ||||||||||||||||||||
Sbjct: 214 ccaaggccacggccccgccg 233



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>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 422     tgccatcaaggcgctcggcgaaggtggc 449
               ||||||||||||||| |||| |||||||
Sbjct: 4845954 tgccatcaaggcgctgggcgcaggtggc 4845927



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>gb|AC113028.15| Mus musculus chromosome 5, clone RP23-205D3, complete sequence
          Length = 275646

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 449    ctccccagcanccctggctttct 471
              |||||||||| ||||||||||||
Sbjct: 214440 ctccccagcacccctggctttct 214462



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>gb|AC119906.6| Mus musculus chromosome 5, clone RP24-239D13, complete sequence
          Length = 257203

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 449   ctccccagcanccctggctttct 471
             |||||||||| ||||||||||||
Sbjct: 56021 ctccccagcacccctggctttct 56043



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>gb|AC102566.9| Mus musculus chromosome 9, clone RP23-223D10, complete sequence
          Length = 253343

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 332   aggtttctcttcggcttcca 351
             ||||||||||||||||||||
Sbjct: 66940 aggtttctcttcggcttcca 66921



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>emb|BX950203.15| Zebrafish DNA sequence from clone CH211-108P22, complete sequence
          Length = 129504

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 324    tttttcacaggtttctcttc 343
              ||||||||||||||||||||
Sbjct: 105309 tttttcacaggtttctcttc 105328



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>gb|AE004223.1| Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 131
             of 251 of the complete chromosome
          Length = 24353

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 399   tcaccgaccttggtgttgat 418
             ||||||||||||||||||||
Sbjct: 14359 tcaccgaccttggtgttgat 14340



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>emb|AL513543.14| Human DNA sequence from clone RP11-343J24 on chromosome 1 Contains part
             of the CHRM3 gene for cholinergic receptor muscarinic 3
             and a novel gene (DKFZp667K2218), complete sequence
          Length = 90907

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 42    tctgttgcctccctctctct 61
             ||||||||||||||||||||
Sbjct: 55096 tctgttgcctccctctctct 55077



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>emb|AL359916.8| Human DNA sequence from clone RP11-550O8 on chromosome 20 Contains
            the RPL7P2 gene for ribosomal protein L7 pseudogene 2,
            the STK35 gene for serine/threonine kinase 35 and a CpG
            island, complete sequence
          Length = 126053

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 45   gttgcctccctctctctcat 64
            ||||||||||||||||||||
Sbjct: 7732 gttgcctccctctctctcat 7751



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>emb|AL161452.19| Human DNA sequence from clone RP11-426A6 on chromosome 9 Contains the
             OBP2A gene for odorant-binding protein 2A, the LCN1 gene
             for lipocalin 1, the MRPS2 gene for mitochondrial
             ribosomal protein S2, gene MGC29761, a novel gene, gene
             KIAA0649, a novel gene, a novel gene, a suppressor of
             cytokine signaling 5 (SOCS5) pseudogene and two CpG
             islands, complete sequence
          Length = 153231

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 280   ccaaggccacggccccgccg 299
             ||||||||||||||||||||
Sbjct: 59089 ccaaggccacggccccgccg 59108



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>dbj|AK024007.1| Homo sapiens cDNA FLJ13945 fis, clone Y79AA1000969
          Length = 1277

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 280 ccaaggccacggccccgccg 299
           ||||||||||||||||||||
Sbjct: 711 ccaaggccacggccccgccg 730



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>ref|NM_144654.1| Homo sapiens chromosome 9 open reading frame 116 (C9orf116), mRNA
          Length = 847

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 280 ccaaggccacggccccgccg 299
           ||||||||||||||||||||
Sbjct: 214 ccaaggccacggccccgccg 233



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>gb|AC068870.17| Homo sapiens chromosome , clone RP11-775C24, complete sequence
          Length = 194237

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 237   aagatgagagcctttgtcaggagccctt 264
             ||||||||||| || |||||||||||||
Sbjct: 17485 aagatgagagctttggtcaggagccctt 17512



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>ref|XM_693166.1| PREDICTED: Danio rerio similar to hematological and neurological
           expressed 1 (LOC569760), mRNA
          Length = 777

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 324 tttttcacaggtttctcttc 343
           ||||||||||||||||||||
Sbjct: 257 tttttcacaggtttctcttc 238



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>gb|AC027808.9| Homo sapiens chromosome 15, clone RP11-351M8, complete sequence
          Length = 221936

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 237    aagatgagagcctttgtcaggagccctt 264
              ||||||||||| || |||||||||||||
Sbjct: 212879 aagatgagagctttggtcaggagccctt 212906



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>gb|AY927868.1| Homo sapiens pierce 1 mRNA, complete cds
          Length = 411

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 280 ccaaggccacggccccgccg 299
           ||||||||||||||||||||
Sbjct: 44  ccaaggccacggccccgccg 63



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>gb|AF119150.1|AF119150 Vibrio cholerae Rtx toxin gene cluster, complete cds
          Length = 18605

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 399   tcaccgaccttggtgttgat 418
             ||||||||||||||||||||
Sbjct: 9999  tcaccgaccttggtgttgat 10018



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>dbj|AP001746.1| Homo sapiens genomic DNA, chromosome 21q, section 90/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 367    cactgttggactccagtcct 386
              ||||||||||||||||||||
Sbjct: 286854 cactgttggactccagtcct 286873



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>dbj|AP001624.1| Homo sapiens genomic DNA, chromosome 21, clone:KB994G8, MX1-D21S171
             region, complete sequence
          Length = 108500

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 367   cactgttggactccagtcct 386
             ||||||||||||||||||||
Sbjct: 53821 cactgttggactccagtcct 53840


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,008,768
Number of Sequences: 3902068
Number of extensions: 4008768
Number of successful extensions: 88182
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 88042
Number of HSP's gapped (non-prelim): 130
length of query: 536
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 513
effective length of database: 17,143,297,704
effective search space: 8794511722152
effective search space used: 8794511722152
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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