| Clone Name | rbaal12p11 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_463949.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1239 Score = 222 bits (112), Expect = 9e-55 Identities = 282/339 (83%) Strand = Plus / Minus Query: 194 ctacaatgcgttcctctgccccacaaacttccgcgcaacgccaaagatgagagcctttgt 253 |||||||| |||||||||||| ||||| ||||| ||||| || |||||||||||||| || Sbjct: 1239 ctacaatgtgttcctctgccctacaaatttccgtgcaacaccgaagatgagagccttggt 1180 Query: 254 caggagcccttggtccagtgtacacgccaaggccacggccccgccgagcacaaggaacct 313 || |||||||| || || || || |||| || || || || ||||||||||||||||| Sbjct: 1179 caacagcccttgatcaagagtgcaagccagagcaacagctccaccgagcacaaggaacct 1120 Query: 314 cgccatacggtttttcacaggtttctcttcggcttccatgatatctgattggtcactgtt 373 || | ||||||||| | ||||||||||| ||||||| |||||||| || || ||| Sbjct: 1119 tgctactcggtttttcgcgggtttctcttctgcttccacaatatctgactgatcgtcgtt 1060 Query: 374 ggactccagtcctcggacaaaattgtcaccgaccttggtgttgatccgtgccatcaaggc 433 ||| |||| ||| || ||||||||||||||||||||||| ||||| | ||||||||||| Sbjct: 1059 ggattccaatccacgaacaaaattgtcaccgaccttggtattgatatgcgccatcaaggc 1000 Query: 434 gctcggcgaaggtggctccccagcanccctggctttctgataggcccggagtccgggttc 493 ||| | || ||||||||||||| | || ||||||||||||||||| ||||| ||||| Sbjct: 999 actctgagacaatggctccccagcagctctcgctttctgataggcccgaagtccaggttc 940 Query: 494 gattctcttcacgcatccccacatgccctgccgaatgcc 532 ||||||||| || || |||||||| |||||||||||||| Sbjct: 939 gattctctttacacacccccacattccctgccgaatgcc 901
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 222 bits (112), Expect = 9e-55 Identities = 282/339 (83%) Strand = Plus / Plus Query: 194 ctacaatgcgttcctctgccccacaaacttccgcgcaacgccaaagatgagagcctttgt 253 |||||||| |||||||||||| ||||| ||||| ||||| || |||||||||||||| || Sbjct: 1289442 ctacaatgtgttcctctgccctacaaatttccgtgcaacaccgaagatgagagccttggt 1289501 Query: 254 caggagcccttggtccagtgtacacgccaaggccacggccccgccgagcacaaggaacct 313 || |||||||| || || || || |||| || || || || ||||||||||||||||| Sbjct: 1289502 caacagcccttgatcaagagtgcaagccagagcaacagctccaccgagcacaaggaacct 1289561 Query: 314 cgccatacggtttttcacaggtttctcttcggcttccatgatatctgattggtcactgtt 373 || | ||||||||| | ||||||||||| ||||||| |||||||| || || ||| Sbjct: 1289562 tgctactcggtttttcgcgggtttctcttctgcttccacaatatctgactgatcgtcgtt 1289621 Query: 374 ggactccagtcctcggacaaaattgtcaccgaccttggtgttgatccgtgccatcaaggc 433 ||| |||| ||| || ||||||||||||||||||||||| ||||| | ||||||||||| Sbjct: 1289622 ggattccaatccacgaacaaaattgtcaccgaccttggtattgatatgcgccatcaaggc 1289681 Query: 434 gctcggcgaaggtggctccccagcanccctggctttctgataggcccggagtccgggttc 493 ||| | || ||||||||||||| | || ||||||||||||||||| ||||| ||||| Sbjct: 1289682 actctgagacaatggctccccagcagctctcgctttctgataggcccgaagtccaggttc 1289741 Query: 494 gattctcttcacgcatccccacatgccctgccgaatgcc 532 ||||||||| || || |||||||| |||||||||||||| Sbjct: 1289742 gattctctttacacacccccacattccctgccgaatgcc 1289780
>dbj|AP004885.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0575F10 Length = 150462 Score = 222 bits (112), Expect = 9e-55 Identities = 282/339 (83%) Strand = Plus / Plus Query: 194 ctacaatgcgttcctctgccccacaaacttccgcgcaacgccaaagatgagagcctttgt 253 |||||||| |||||||||||| ||||| ||||| ||||| || |||||||||||||| || Sbjct: 120533 ctacaatgtgttcctctgccctacaaatttccgtgcaacaccgaagatgagagccttggt 120592 Query: 254 caggagcccttggtccagtgtacacgccaaggccacggccccgccgagcacaaggaacct 313 || |||||||| || || || || |||| || || || || ||||||||||||||||| Sbjct: 120593 caacagcccttgatcaagagtgcaagccagagcaacagctccaccgagcacaaggaacct 120652 Query: 314 cgccatacggtttttcacaggtttctcttcggcttccatgatatctgattggtcactgtt 373 || | ||||||||| | ||||||||||| ||||||| |||||||| || || ||| Sbjct: 120653 tgctactcggtttttcgcgggtttctcttctgcttccacaatatctgactgatcgtcgtt 120712 Query: 374 ggactccagtcctcggacaaaattgtcaccgaccttggtgttgatccgtgccatcaaggc 433 ||| |||| ||| || ||||||||||||||||||||||| ||||| | ||||||||||| Sbjct: 120713 ggattccaatccacgaacaaaattgtcaccgaccttggtattgatatgcgccatcaaggc 120772 Query: 434 gctcggcgaaggtggctccccagcanccctggctttctgataggcccggagtccgggttc 493 ||| | || ||||||||||||| | || ||||||||||||||||| ||||| ||||| Sbjct: 120773 actctgagacaatggctccccagcagctctcgctttctgataggcccgaagtccaggttc 120832 Query: 494 gattctcttcacgcatccccacatgccctgccgaatgcc 532 ||||||||| || || |||||||| |||||||||||||| Sbjct: 120833 gattctctttacacacccccacattccctgccgaatgcc 120871
>dbj|AP006754.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0018H03, complete sequence Length = 94450 Score = 222 bits (112), Expect = 9e-55 Identities = 282/339 (83%) Strand = Plus / Plus Query: 194 ctacaatgcgttcctctgccccacaaacttccgcgcaacgccaaagatgagagcctttgt 253 |||||||| |||||||||||| ||||| ||||| ||||| || |||||||||||||| || Sbjct: 63471 ctacaatgtgttcctctgccctacaaatttccgtgcaacaccgaagatgagagccttggt 63530 Query: 254 caggagcccttggtccagtgtacacgccaaggccacggccccgccgagcacaaggaacct 313 || |||||||| || || || || |||| || || || || ||||||||||||||||| Sbjct: 63531 caacagcccttgatcaagagtgcaagccagagcaacagctccaccgagcacaaggaacct 63590 Query: 314 cgccatacggtttttcacaggtttctcttcggcttccatgatatctgattggtcactgtt 373 || | ||||||||| | ||||||||||| ||||||| |||||||| || || ||| Sbjct: 63591 tgctactcggtttttcgcgggtttctcttctgcttccacaatatctgactgatcgtcgtt 63650 Query: 374 ggactccagtcctcggacaaaattgtcaccgaccttggtgttgatccgtgccatcaaggc 433 ||| |||| ||| || ||||||||||||||||||||||| ||||| | ||||||||||| Sbjct: 63651 ggattccaatccacgaacaaaattgtcaccgaccttggtattgatatgcgccatcaaggc 63710 Query: 434 gctcggcgaaggtggctccccagcanccctggctttctgataggcccggagtccgggttc 493 ||| | || ||||||||||||| | || ||||||||||||||||| ||||| ||||| Sbjct: 63711 actctgagacaatggctccccagcagctctcgctttctgataggcccgaagtccaggttc 63770 Query: 494 gattctcttcacgcatccccacatgccctgccgaatgcc 532 ||||||||| || || |||||||| |||||||||||||| Sbjct: 63771 gattctctttacacacccccacattccctgccgaatgcc 63809
>gb|AY596556.1| Saccharum officinarum clone SCJFLR1013D08, complete sequence Length = 1689 Score = 194 bits (98), Expect = 2e-46 Identities = 271/329 (82%) Strand = Plus / Minus Query: 189 agatcctacaatgcgttcctctgccccacaaacttccgcgcaacgccaaagatgagagcc 248 |||| |||||||| ||||||||||| || || || ||||| ||||| |||||||||||| Sbjct: 1361 agatgctacaatgtcttcctctgcccgacgaattttcgcgcgacgccgaagatgagagcc 1302 Query: 249 tttgtcaggagcccttggtccagtgtacacgccaaggccacggccccgccgagcacaagg 308 || || ||||||||||| || || ||||| |||| || || ||||| ||||| |||||| Sbjct: 1301 ttcgttaggagcccttgatcaagagtacaggccagagcaactgcccctccgagtacaagg 1242 Query: 309 aacctcgccatacggtttttcacaggtttctcttcggcttccatgatatctgattggtca 368 ||||| |||| | |||| || |||| |||||||| ||||||| ||| ||||||| ||| Sbjct: 1241 aaccttgccacatggttcctcgcaggcttctcttctgcttccacgatttctgattcgtcg 1182 Query: 369 ctgttggactccagtcctcggacaaaattgtcaccgaccttggtgttgatccgtgccatc 428 ||||||||||||| | || |||||||||||||| ||||| || ||||| || |||||| Sbjct: 1181 ctgttggactccaatgaccgaacaaaattgtcaccaaccttagtattgattcgggccatc 1122 Query: 429 aaggcgctcggcgaaggtggctccccagcanccctggctttctgataggcccggagtccg 488 ||||| ||| | || | |||| |||| ||| ||||||||| |||||||||||||||||| Sbjct: 1121 aaggcactccgtgacgctggcaccccggcagccctggcttcctgataggcccggagtcca 1062 Query: 489 ggttcgattctcttcacgcatccccacat 517 || || ||| |||| || ||||||||||| Sbjct: 1061 ggctcaattttctttacacatccccacat 1033
>gb|AY107844.1| Zea mays PCO146552 mRNA sequence Length = 823 Score = 85.7 bits (43), Expect = 1e-13 Identities = 102/122 (83%) Strand = Plus / Minus Query: 404 gaccttggtgttgatccgtgccatcaaggcgctcggcgaaggtggctccccagcanccct 463 |||||||||||||||||| ||||||| ||||||| |||| || ||| |||| || ||| Sbjct: 249 gaccttggtgttgatccgggccatcagggcgctccgcgacggcggcgcccccgcggcccg 190 Query: 464 ggctttctgataggcccggagtccgggttcgattctcttcacgcatccccacatgccctg 523 || | ||| ||||||||||| || || ||||| ||||||||||| |||||||| ||||| Sbjct: 189 cgcctgctggtaggcccggagccccggctcgatcctcttcacgcacccccacatcccctg 130 Query: 524 cc 525 || Sbjct: 129 cc 128 Score = 73.8 bits (37), Expect = 5e-10 Identities = 58/65 (89%) Strand = Plus / Minus Query: 204 ttcctctgccccacaaacttccgcgcaacgccaaagatgagagcctttgtcaggagccct 263 ||||||||||| || ||| ||||||| ||||| |||||||||||||| ||||||||||| Sbjct: 494 ttcctctgcccgacgaacctccgcgcgacgccgaagatgagagccttggtcaggagcccc 435 Query: 264 tggtc 268 ||||| Sbjct: 434 tggtc 430
>dbj|AK058547.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-017-C05, full insert sequence Length = 514 Score = 67.9 bits (34), Expect = 3e-08 Identities = 55/62 (88%) Strand = Plus / Minus Query: 194 ctacaatgcgttcctctgccccacaaacttccgcgcaacgccaaagatgagagcctttgt 253 |||||||| |||||||||||| ||||| ||||| ||||| || |||||||||||||| || Sbjct: 70 ctacaatgtgttcctctgccctacaaatttccgtgcaacaccgaagatgagagccttggt 11 Query: 254 ca 255 || Sbjct: 10 ca 9
>gb|AC093718.3| Homo sapiens 12 BAC RP11-742C6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 160904 Score = 48.1 bits (24), Expect = 0.030 Identities = 27/28 (96%) Strand = Plus / Plus Query: 233 gccaaagatgagagcctttgtcaggagc 260 |||||||| ||||||||||||||||||| Sbjct: 57999 gccaaagaagagagcctttgtcaggagc 58026 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Minus Query: 49 cctccctctctctcatcgactg 70 |||||||||||||||||||||| Sbjct: 98505 cctccctctctctcatcgactg 98484
>emb|AL050348.21|HSDJ447F3 Human DNA sequence from clone RP3-447F3 on chromosome 20 Contains the HNRPA1P3 gene for heterogenous nuclear ribonucleoprotein A1 pseudogene 3, the C20orf168 gene for a novel protein with Kunitz/Bovine pancreatic trypsin inhibitor domain, the WFDC3 gene for WAP four-disulfide core domain 3, the C20orf167 gene for a novel protein similar to synaptotagmin 1, the UBE2C gene for ubiquitin-conjugating enzyme E2 (H10), the TNNC2 gene for fast troponin C2 and two CpG islands, complete sequence Length = 97385 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 41 ctctgttgcctccctctctctc 62 |||||||||||||||||||||| Sbjct: 73600 ctctgttgcctccctctctctc 73621
>gb|AF224262.1|AF224262 Heterodontus francisci HoxA10 (HoxA10), HoxA9 (HoxA9), HoxA7 (HoxA7), HoxA6 (HoxA6), HoxA5 (HoxA5), HoxA4 (HoxA4), HoxA3 (HoxA3), HoxA2 (HoxA2), and HoxA1 (HoxA1) genes, complete cds Length = 81196 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 12 cttttccaatgtaaattacatg 33 |||||||||||||||||||||| Sbjct: 57975 cttttccaatgtaaattacatg 57996
>gb|AC169506.1| Mus musculus BAC clone RP23-417L6 from chromosome 17, complete sequence Length = 202033 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 178 aggaagatgtcagatcctaca 198 ||||||||||||||||||||| Sbjct: 170777 aggaagatgtcagatcctaca 170797
>emb|BX649550.6| Zebrafish DNA sequence from clone CH211-120K2 in linkage group 6, complete sequence Length = 170472 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 22 gtaaattacatgctttttact 42 ||||||||||||||||||||| Sbjct: 104611 gtaaattacatgctttttact 104591
>gb|AC008517.7| Homo sapiens chromosome 5 clone CTC-458G6, complete sequence Length = 198942 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 14 tttccaatgtaaattacatgctttt 38 |||||||||||||||||||| |||| Sbjct: 170070 tttccaatgtaaattacatgttttt 170094
>emb|BX663606.4| Zebrafish DNA sequence from clone CH211-181L5 in linkage group 6, complete sequence Length = 99947 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 22 gtaaattacatgctttttact 42 ||||||||||||||||||||| Sbjct: 46872 gtaaattacatgctttttact 46852
>emb|AL591510.11| Zebrafish DNA sequence from clone BUSM1-228E24 in linkage group 6, complete sequence Length = 99579 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 22 gtaaattacatgctttttact 42 ||||||||||||||||||||| Sbjct: 36576 gtaaattacatgctttttact 36556
>emb|AL591370.10| Zebrafish DNA sequence from clone BUSM1-52I16 in linkage group 6, complete sequence Length = 131033 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 22 gtaaattacatgctttttact 42 ||||||||||||||||||||| Sbjct: 21976 gtaaattacatgctttttact 21996
>emb|CT033749.8| Mouse DNA sequence from clone RP23-14N10 on chromosome 17, complete sequence Length = 212052 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 178 aggaagatgtcagatcctaca 198 ||||||||||||||||||||| Sbjct: 155832 aggaagatgtcagatcctaca 155812
>ref|XM_520353.1| PREDICTED: Pan troglodytes similar to chromosome 9 open reading frame 116 (LOC464843), mRNA Length = 733 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 280 ccaaggccacggccccgccg 299 |||||||||||||||||||| Sbjct: 44 ccaaggccacggccccgccg 63
>gb|BC021261.1| Homo sapiens chromosome 9 open reading frame 116, mRNA (cDNA clone MGC:29761 IMAGE:4136397), complete cds Length = 847 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 280 ccaaggccacggccccgccg 299 |||||||||||||||||||| Sbjct: 214 ccaaggccacggccccgccg 233
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 40.1 bits (20), Expect = 7.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 422 tgccatcaaggcgctcggcgaaggtggc 449 ||||||||||||||| |||| ||||||| Sbjct: 4845954 tgccatcaaggcgctgggcgcaggtggc 4845927
>gb|AC113028.15| Mus musculus chromosome 5, clone RP23-205D3, complete sequence Length = 275646 Score = 40.1 bits (20), Expect = 7.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 449 ctccccagcanccctggctttct 471 |||||||||| |||||||||||| Sbjct: 214440 ctccccagcacccctggctttct 214462
>gb|AC119906.6| Mus musculus chromosome 5, clone RP24-239D13, complete sequence Length = 257203 Score = 40.1 bits (20), Expect = 7.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 449 ctccccagcanccctggctttct 471 |||||||||| |||||||||||| Sbjct: 56021 ctccccagcacccctggctttct 56043
>gb|AC102566.9| Mus musculus chromosome 9, clone RP23-223D10, complete sequence Length = 253343 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 332 aggtttctcttcggcttcca 351 |||||||||||||||||||| Sbjct: 66940 aggtttctcttcggcttcca 66921
>emb|BX950203.15| Zebrafish DNA sequence from clone CH211-108P22, complete sequence Length = 129504 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 tttttcacaggtttctcttc 343 |||||||||||||||||||| Sbjct: 105309 tttttcacaggtttctcttc 105328
>gb|AE004223.1| Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 131 of 251 of the complete chromosome Length = 24353 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 399 tcaccgaccttggtgttgat 418 |||||||||||||||||||| Sbjct: 14359 tcaccgaccttggtgttgat 14340
>emb|AL513543.14| Human DNA sequence from clone RP11-343J24 on chromosome 1 Contains part of the CHRM3 gene for cholinergic receptor muscarinic 3 and a novel gene (DKFZp667K2218), complete sequence Length = 90907 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 tctgttgcctccctctctct 61 |||||||||||||||||||| Sbjct: 55096 tctgttgcctccctctctct 55077
>emb|AL359916.8| Human DNA sequence from clone RP11-550O8 on chromosome 20 Contains the RPL7P2 gene for ribosomal protein L7 pseudogene 2, the STK35 gene for serine/threonine kinase 35 and a CpG island, complete sequence Length = 126053 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 gttgcctccctctctctcat 64 |||||||||||||||||||| Sbjct: 7732 gttgcctccctctctctcat 7751
>emb|AL161452.19| Human DNA sequence from clone RP11-426A6 on chromosome 9 Contains the OBP2A gene for odorant-binding protein 2A, the LCN1 gene for lipocalin 1, the MRPS2 gene for mitochondrial ribosomal protein S2, gene MGC29761, a novel gene, gene KIAA0649, a novel gene, a novel gene, a suppressor of cytokine signaling 5 (SOCS5) pseudogene and two CpG islands, complete sequence Length = 153231 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 280 ccaaggccacggccccgccg 299 |||||||||||||||||||| Sbjct: 59089 ccaaggccacggccccgccg 59108
>dbj|AK024007.1| Homo sapiens cDNA FLJ13945 fis, clone Y79AA1000969 Length = 1277 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 280 ccaaggccacggccccgccg 299 |||||||||||||||||||| Sbjct: 711 ccaaggccacggccccgccg 730
>ref|NM_144654.1| Homo sapiens chromosome 9 open reading frame 116 (C9orf116), mRNA Length = 847 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 280 ccaaggccacggccccgccg 299 |||||||||||||||||||| Sbjct: 214 ccaaggccacggccccgccg 233
>gb|AC068870.17| Homo sapiens chromosome , clone RP11-775C24, complete sequence Length = 194237 Score = 40.1 bits (20), Expect = 7.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 237 aagatgagagcctttgtcaggagccctt 264 ||||||||||| || ||||||||||||| Sbjct: 17485 aagatgagagctttggtcaggagccctt 17512
>ref|XM_693166.1| PREDICTED: Danio rerio similar to hematological and neurological expressed 1 (LOC569760), mRNA Length = 777 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 tttttcacaggtttctcttc 343 |||||||||||||||||||| Sbjct: 257 tttttcacaggtttctcttc 238
>gb|AC027808.9| Homo sapiens chromosome 15, clone RP11-351M8, complete sequence Length = 221936 Score = 40.1 bits (20), Expect = 7.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 237 aagatgagagcctttgtcaggagccctt 264 ||||||||||| || ||||||||||||| Sbjct: 212879 aagatgagagctttggtcaggagccctt 212906
>gb|AY927868.1| Homo sapiens pierce 1 mRNA, complete cds Length = 411 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 280 ccaaggccacggccccgccg 299 |||||||||||||||||||| Sbjct: 44 ccaaggccacggccccgccg 63
>gb|AF119150.1|AF119150 Vibrio cholerae Rtx toxin gene cluster, complete cds Length = 18605 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 tcaccgaccttggtgttgat 418 |||||||||||||||||||| Sbjct: 9999 tcaccgaccttggtgttgat 10018
>dbj|AP001746.1| Homo sapiens genomic DNA, chromosome 21q, section 90/105 Length = 340000 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 cactgttggactccagtcct 386 |||||||||||||||||||| Sbjct: 286854 cactgttggactccagtcct 286873
>dbj|AP001624.1| Homo sapiens genomic DNA, chromosome 21, clone:KB994G8, MX1-D21S171 region, complete sequence Length = 108500 Score = 40.1 bits (20), Expect = 7.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 cactgttggactccagtcct 386 |||||||||||||||||||| Sbjct: 53821 cactgttggactccagtcct 53840 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,008,768 Number of Sequences: 3902068 Number of extensions: 4008768 Number of successful extensions: 88182 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 88042 Number of HSP's gapped (non-prelim): 130 length of query: 536 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 513 effective length of database: 17,143,297,704 effective search space: 8794511722152 effective search space used: 8794511722152 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)