ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal7a04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK071387.1| Oryza sativa (japonica cultivar-group) cDNA clon... 361 2e-96
2dbj|AK059971.1| Oryza sativa (japonica cultivar-group) cDNA clon... 361 2e-96
3gb|BT017466.1| Zea mays clone EL01N0407H11.c mRNA sequence 281 1e-72
4gb|AY112250.1| Zea mays CL5890_1 mRNA sequence 254 3e-64
5dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 149 1e-32
6gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 149 1e-32
7emb|AL928753.3|CNS08CBQ Oryza sativa chromosome 12, . BAC OSJNBb... 149 1e-32
8gb|AC011450.4|AC011450 Homo sapiens chromosome 19 clone CTC-301O... 42 2.2
9gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome 40 8.6
10gb|BC071538.1| Danio rerio proteasome (prosome, macropain) 26S s... 40 8.6
11gb|AE014075.1| Escherichia coli CFT073, complete genome 40 8.6
12gb|CP000243.1| Escherichia coli UTI89, complete genome 40 8.6
13gb|DQ366717.1| Uncultured Prochlorococcus marinus clone ASNC3046... 40 8.6
14emb|AL163544.24| Human DNA sequence from clone RP11-322A14 on ch... 40 8.6
15gb|U00096.2| Escherichia coli K-12 MG1655, complete genome 40 8.6
16emb|AL161417.17| Human DNA sequence from clone RP11-125A7 on chr... 40 8.6
17ref|NM_001002091.1| Danio rerio proteasome (prosome, macropain) ... 40 8.6
18dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome 40 8.6
19gb|AC096953.4| Homo sapiens BAC clone RP11-272G21 from 4, comple... 40 8.6
20gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome 40 8.6
21emb|AL935145.12| Zebrafish DNA sequence from clone CH211-173B9 i... 40 8.6
22gb|U18997.1|ECOUW67 Escherichia coli K-12 chromosomal region fro... 40 8.6
23gb|AC140943.1| Gallus gallus BAC clone TAM32-50F18 from chromoso... 40 8.6
24gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome 40 8.6
25dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome 40 8.6
26gb|CP000034.1| Shigella dysenteriae Sd197, complete genome 40 8.6
27gb|CP000038.1| Shigella sonnei Ss046, complete genome 40 8.6

>dbj|AK071387.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023091J19, full
           insert sequence
          Length = 906

 Score =  361 bits (182), Expect = 2e-96
 Identities = 308/350 (88%)
 Strand = Plus / Minus

                                                                       
Query: 278 ttgcttctccgctggtgcacgtcccagttaaatatccgagcaatcgtaacctgggttatt 337
           ||||||||||| ||||||||||||||||| || | ||||||||| |||||||| || || 
Sbjct: 633 ttgcttctccgttggtgcacgtcccagttgaacacccgagcaattgtaacctgagtgatc 574

                                                                       
Query: 338 gtttgttggtccctcaagaaatgaaggtcaccaacaaggacttctaaactggcccttgca 397
           ||||||||||||| |||||| || || ||| ||||||||||||||||||||||| | || 
Sbjct: 573 gtttgttggtcccgcaagaactggagatcagcaacaaggacttctaaactggccttggcg 514

                                                                       
Query: 398 ttatccaagttacttttcaggagctcattggcctcgtcgcaggagtattccagcatcacg 457
           || ||||  ||  |||||| |||  | |||||||||||||||||||| |||||||| || 
Sbjct: 513 ttttccagattctttttcaagagggcgttggcctcgtcgcaggagtactccagcattaca 454

                                                                       
Query: 458 tttgcacccaaccataggcacaccgagtcagagtcctcgattttagcacgcgaatagatt 517
           ||||||||||||||||||||||| || || | |||||||||||| ||||| || ||||||
Sbjct: 453 tttgcacccaaccataggcacacagaatcggtgtcctcgattttcgcacgggagtagatt 394

                                                                       
Query: 518 ccctcagataattcaaaatcggatatgagtgcctcacccaaagcttttttagctttcaac 577
           |||||||||||||||||||||| | ||||||||||||||||||||||||||||||  || 
Sbjct: 393 ccctcagataattcaaaatcggctgtgagtgcctcacccaaagcttttttagcttgtaaa 334

                                                             
Query: 578 gtcgcaacaatatccaagcacttctctatatcaggaattttcgcctgaag 627
           || |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 333 gttgcaacaatatccaagcacttctctatatcaggaatttttgcctgaag 284



to top

>dbj|AK059971.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-H01, full
           insert sequence
          Length = 905

 Score =  361 bits (182), Expect = 2e-96
 Identities = 308/350 (88%)
 Strand = Plus / Minus

                                                                       
Query: 278 ttgcttctccgctggtgcacgtcccagttaaatatccgagcaatcgtaacctgggttatt 337
           ||||||||||| ||||||||||||||||| || | ||||||||| |||||||| || || 
Sbjct: 632 ttgcttctccgttggtgcacgtcccagttgaacacccgagcaattgtaacctgagtgatc 573

                                                                       
Query: 338 gtttgttggtccctcaagaaatgaaggtcaccaacaaggacttctaaactggcccttgca 397
           ||||||||||||| |||||| || || ||| ||||||||||||||||||||||| | || 
Sbjct: 572 gtttgttggtcccgcaagaactggagatcagcaacaaggacttctaaactggccttggcg 513

                                                                       
Query: 398 ttatccaagttacttttcaggagctcattggcctcgtcgcaggagtattccagcatcacg 457
           || ||||  ||  |||||| |||  | |||||||||||||||||||| |||||||| || 
Sbjct: 512 ttttccagattctttttcaagagggcgttggcctcgtcgcaggagtactccagcattaca 453

                                                                       
Query: 458 tttgcacccaaccataggcacaccgagtcagagtcctcgattttagcacgcgaatagatt 517
           ||||||||||||||||||||||| || || | |||||||||||| ||||| || ||||||
Sbjct: 452 tttgcacccaaccataggcacacagaatcggtgtcctcgattttcgcacgggagtagatt 393

                                                                       
Query: 518 ccctcagataattcaaaatcggatatgagtgcctcacccaaagcttttttagctttcaac 577
           |||||||||||||||||||||| | ||||||||||||||||||||||||||||||  || 
Sbjct: 392 ccctcagataattcaaaatcggctgtgagtgcctcacccaaagcttttttagcttgtaaa 333

                                                             
Query: 578 gtcgcaacaatatccaagcacttctctatatcaggaattttcgcctgaag 627
           || |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 332 gttgcaacaatatccaagcacttctctatatcaggaatttttgcctgaag 283



to top

>gb|BT017466.1| Zea mays clone EL01N0407H11.c mRNA sequence
          Length = 870

 Score =  281 bits (142), Expect = 1e-72
 Identities = 301/354 (85%)
 Strand = Plus / Minus

                                                                       
Query: 274 ctgtttgcttctccgctggtgcacgtcccagttaaatatccgagcaatcgtaacctgggt 333
           ||||||||||||||| |||||||||||||   | |||| ||||| ||| |||||||| ||
Sbjct: 587 ctgtttgcttctccgatggtgcacgtccccagtgaatacccgagaaattgtaacctgagt 528

                                                                       
Query: 334 tattgtttgttggtccctcaagaaatgaaggtcaccaacaaggacttctaaactggccct 393
            || ||||| ||||| | || |||||| || ||| |||||||||||||||| |||||| |
Sbjct: 527 gatggtttgctggtctcgcaggaaatggagatcagcaacaaggacttctaagctggcctt 468

                                                                       
Query: 394 tgcattatccaagttacttttcaggagctcattggcctcgtcgcaggagtattccagcat 453
            ||||| ||||||||  | |||| |||  |||||||||| ||||| ||||| ||||||||
Sbjct: 467 ggcattttccaagtttttcttcaagagggcattggcctcatcgcaagagtactccagcat 408

                                                                       
Query: 454 cacgtttgcacccaaccataggcacaccgagtcagagtcctcgattttagcacgcgaata 513
           ||| |||||||||||||| ||||||||||||||||  ||||| ||||| ||||| || ||
Sbjct: 407 cacatttgcacccaaccacaggcacaccgagtcagtatcctcaattttcgcacgggagta 348

                                                                       
Query: 514 gattccctcagataattcaaaatcggatatgagtgcctcacccaaagcttttttagcttt 573
           ||| ||||| || ||||| ||||| | ||||||||||||||||||| | |||||||||| 
Sbjct: 347 gatcccctcggacaattcgaaatcagctatgagtgcctcacccaaatcctttttagcttg 288

                                                                 
Query: 574 caacgtcgcaacaatatccaagcacttctctatatcaggaattttcgcctgaag 627
            || || ||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 287 taatgttgcaacaatatccaagcacttctctatatcaggaatctttgcctgaag 234



to top

>gb|AY112250.1| Zea mays CL5890_1 mRNA sequence
          Length = 949

 Score =  254 bits (128), Expect = 3e-64
 Identities = 295/354 (83%)
 Strand = Plus / Minus

                                                                       
Query: 274 ctgtttgcttctccgctggtgcacgtcccagttaaatatccgagcaatcgtaacctgggt 333
           ||||||||||||||| ||||||||||||||||| |||| ||||| ||| |||||||| ||
Sbjct: 561 ctgtttgcttctccgatggtgcacgtcccagttgaatacccgagaaattgtaacctgagt 502

                                                                       
Query: 334 tattgtttgttggtccctcaagaaatgaaggtcaccaacaaggacttctaaactggccct 393
            || ||||| ||||| | || |||||| || ||| |||||||||||||||| |||||| |
Sbjct: 501 gatggtttgctggtctcgcaggaaatggagatcagcaacaaggacttctaagctggcctt 442

                                                                       
Query: 394 tgcattatccaagttacttttcaggagctcattggcctcgtcgcaggagtattccagcat 453
            ||||| ||||||      |||| |||  |||||||||| ||||| ||||| ||||||||
Sbjct: 441 ggcattttccaagnnnnncttcaagagggcattggcctcatcgcaagagtactccagcat 382

                                                                       
Query: 454 cacgtttgcacccaaccataggcacaccgagtcagagtcctcgattttagcacgcgaata 513
           ||| |||||||||||||| ||||||||||||||||  ||||| ||||| ||||| || ||
Sbjct: 381 cacatttgcacccaaccacaggcacaccgagtcagtatcctcaattttcgcacgggagta 322

                                                                       
Query: 514 gattccctcagataattcaaaatcggatatgagtgcctcacccaaagcttttttagcttt 573
           ||| ||||| || ||||| ||||| | ||||||||||||||||||| |      ||||| 
Sbjct: 321 gatcccctcggacaattcgaaatcagctatgagtgcctcacccaaatccnnnnnagcttg 262

                                                                 
Query: 574 caacgtcgcaacaatatccaagcacttctctatatcaggaattttcgcctgaag 627
            || || | ||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 261 taatgttgtaacaatatccaagcacttctctatatcaggaatctttgcctgaag 208



to top

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  149 bits (75), Expect = 1e-32
 Identities = 111/123 (90%)
 Strand = Plus / Minus

                                                                            
Query: 429      cctcgtcgcaggagtattccagcatcacgtttgcacccaaccataggcacaccgagtcag 488
                |||||||||||||||| |||||||| || ||||||||||||||||||||||| || || |
Sbjct: 23117588 cctcgtcgcaggagtactccagcattacatttgcacccaaccataggcacacagaatcgg 23117529

                                                                            
Query: 489      agtcctcgattttagcacgcgaatagattccctcagataattcaaaatcggatatgagtg 548
                 |||||||||||| ||||| || |||||||||||||||||||||||||||| | ||||||
Sbjct: 23117528 tgtcctcgattttcgcacgggagtagattccctcagataattcaaaatcggctgtgagtg 23117469

                   
Query: 549      cct 551
                |||
Sbjct: 23117468 cct 23117466



 Score =  111 bits (56), Expect = 3e-21
 Identities = 71/76 (93%)
 Strand = Plus / Minus

                                                                            
Query: 549      cctcacccaaagcttttttagctttcaacgtcgcaacaatatccaagcacttctctatat 608
                ||||||||||||||||||||||||  || || ||||||||||||||||||||||||||||
Sbjct: 23116517 cctcacccaaagcttttttagcttgtaaagttgcaacaatatccaagcacttctctatat 23116458

                                
Query: 609      caggaattttcgcctg 624
                |||||||||| |||||
Sbjct: 23116457 caggaatttttgcctg 23116442



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 49/54 (90%)
 Strand = Plus / Minus

                                                                      
Query: 338      gtttgttggtccctcaagaaatgaaggtcaccaacaaggacttctaaactggcc 391
                ||||||||||||| |||||| || || ||| |||||||||||||||||||||||
Sbjct: 23117759 gtttgttggtcccgcaagaactggagatcagcaacaaggacttctaaactggcc 23117706



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                     
Query: 278      ttgcttctccgctggtgcacgtcccagttaaatatccgagcaatcgtaacctg 330
                ||||||||||| ||||||||||||||||| || | ||||||||| ||||||||
Sbjct: 23117904 ttgcttctccgttggtgcacgtcccagttgaacacccgagcaattgtaacctg 23117852



to top

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  149 bits (75), Expect = 1e-32
 Identities = 111/123 (90%)
 Strand = Plus / Minus

                                                                            
Query: 429      cctcgtcgcaggagtattccagcatcacgtttgcacccaaccataggcacaccgagtcag 488
                |||||||||||||||| |||||||| || ||||||||||||||||||||||| || || |
Sbjct: 23045779 cctcgtcgcaggagtactccagcattacatttgcacccaaccataggcacacagaatcgg 23045720

                                                                            
Query: 489      agtcctcgattttagcacgcgaatagattccctcagataattcaaaatcggatatgagtg 548
                 |||||||||||| ||||| || |||||||||||||||||||||||||||| | ||||||
Sbjct: 23045719 tgtcctcgattttcgcacgggagtagattccctcagataattcaaaatcggctgtgagtg 23045660

                   
Query: 549      cct 551
                |||
Sbjct: 23045659 cct 23045657



 Score =  111 bits (56), Expect = 3e-21
 Identities = 71/76 (93%)
 Strand = Plus / Minus

                                                                            
Query: 549      cctcacccaaagcttttttagctttcaacgtcgcaacaatatccaagcacttctctatat 608
                ||||||||||||||||||||||||  || || ||||||||||||||||||||||||||||
Sbjct: 23044708 cctcacccaaagcttttttagcttgtaaagttgcaacaatatccaagcacttctctatat 23044649

                                
Query: 609      caggaattttcgcctg 624
                |||||||||| |||||
Sbjct: 23044648 caggaatttttgcctg 23044633



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 49/54 (90%)
 Strand = Plus / Minus

                                                                      
Query: 338      gtttgttggtccctcaagaaatgaaggtcaccaacaaggacttctaaactggcc 391
                ||||||||||||| |||||| || || ||| |||||||||||||||||||||||
Sbjct: 23045950 gtttgttggtcccgcaagaactggagatcagcaacaaggacttctaaactggcc 23045897



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                     
Query: 278      ttgcttctccgctggtgcacgtcccagttaaatatccgagcaatcgtaacctg 330
                ||||||||||| ||||||||||||||||| || | ||||||||| ||||||||
Sbjct: 23046095 ttgcttctccgttggtgcacgtcccagttgaacacccgagcaattgtaacctg 23046043



to top

>emb|AL928753.3|CNS08CBQ Oryza sativa chromosome 12, . BAC OSJNBb0076G11 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 135323

 Score =  149 bits (75), Expect = 1e-32
 Identities = 111/123 (90%)
 Strand = Plus / Plus

                                                                         
Query: 429   cctcgtcgcaggagtattccagcatcacgtttgcacccaaccataggcacaccgagtcag 488
             |||||||||||||||| |||||||| || ||||||||||||||||||||||| || || |
Sbjct: 60809 cctcgtcgcaggagtactccagcattacatttgcacccaaccataggcacacagaatcgg 60868

                                                                         
Query: 489   agtcctcgattttagcacgcgaatagattccctcagataattcaaaatcggatatgagtg 548
              |||||||||||| ||||| || |||||||||||||||||||||||||||| | ||||||
Sbjct: 60869 tgtcctcgattttcgcacgggagtagattccctcagataattcaaaatcggctgtgagtg 60928

                
Query: 549   cct 551
             |||
Sbjct: 60929 cct 60931



 Score =  111 bits (56), Expect = 3e-21
 Identities = 71/76 (93%)
 Strand = Plus / Plus

                                                                         
Query: 549   cctcacccaaagcttttttagctttcaacgtcgcaacaatatccaagcacttctctatat 608
             ||||||||||||||||||||||||  || || ||||||||||||||||||||||||||||
Sbjct: 61880 cctcacccaaagcttttttagcttgtaaagttgcaacaatatccaagcacttctctatat 61939

                             
Query: 609   caggaattttcgcctg 624
             |||||||||| |||||
Sbjct: 61940 caggaatttttgcctg 61955



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 49/54 (90%)
 Strand = Plus / Plus

                                                                   
Query: 338   gtttgttggtccctcaagaaatgaaggtcaccaacaaggacttctaaactggcc 391
             ||||||||||||| |||||| || || ||| |||||||||||||||||||||||
Sbjct: 60638 gtttgttggtcccgcaagaactggagatcagcaacaaggacttctaaactggcc 60691



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 48/53 (90%)
 Strand = Plus / Plus

                                                                  
Query: 278   ttgcttctccgctggtgcacgtcccagttaaatatccgagcaatcgtaacctg 330
             ||||||||||| ||||||||||||||||| || | ||||||||| ||||||||
Sbjct: 60493 ttgcttctccgttggtgcacgtcccagttgaacacccgagcaattgtaacctg 60545



to top

>gb|AC011450.4|AC011450 Homo sapiens chromosome 19 clone CTC-301O7, complete sequence
          Length = 106168

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 446   tccagcatcacgtttgcaccc 466
             |||||||||||||||||||||
Sbjct: 47774 tccagcatcacgtttgcaccc 47754



to top

>gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome
          Length = 4607203

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 41      agcccaaaacagaagcgaac 60
               ||||||||||||||||||||
Sbjct: 3609504 agcccaaaacagaagcgaac 3609523



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 41      agcccaaaacagaagcgaac 60
               ||||||||||||||||||||
Sbjct: 3402731 agcccaaaacagaagcgaac 3402712



to top

>gb|BC071538.1| Danio rerio proteasome (prosome, macropain) 26S subunit, ATPase, 1b,
            mRNA (cDNA clone MGC:86923 IMAGE:6905970), complete cds
          Length = 1521

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 358  atgaaggtcaccaacaaggacttc 381
            ||||||||||||||| ||||||||
Sbjct: 1261 atgaaggtcaccaacgaggacttc 1284



to top

>gb|AE014075.1| Escherichia coli CFT073, complete genome
          Length = 5231428

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 41      agcccaaaacagaagcgaac 60
               ||||||||||||||||||||
Sbjct: 3852221 agcccaaaacagaagcgaac 3852202



to top

>gb|CP000243.1| Escherichia coli UTI89, complete genome
          Length = 5065741

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 41      agcccaaaacagaagcgaac 60
               ||||||||||||||||||||
Sbjct: 3638411 agcccaaaacagaagcgaac 3638392



to top

>gb|DQ366717.1| Uncultured Prochlorococcus marinus clone ASNC3046 genomic sequence
          Length = 33332

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 515   attccctcagataattcaaa 534
             ||||||||||||||||||||
Sbjct: 10271 attccctcagataattcaaa 10252



to top

>emb|AL163544.24| Human DNA sequence from clone RP11-322A14 on chromosome 13, complete
            sequence
          Length = 60286

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 93   aacaccataaaactgaatgc 112
            ||||||||||||||||||||
Sbjct: 1302 aacaccataaaactgaatgc 1321



to top

>gb|U00096.2| Escherichia coli K-12 MG1655, complete genome
          Length = 4639675

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 41      agcccaaaacagaagcgaac 60
               ||||||||||||||||||||
Sbjct: 3418474 agcccaaaacagaagcgaac 3418455



to top

>emb|AL161417.17| Human DNA sequence from clone RP11-125A7 on chromosome 13, complete
              sequence
          Length = 157306

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 93     aacaccataaaactgaatgc 112
              ||||||||||||||||||||
Sbjct: 156608 aacaccataaaactgaatgc 156627



to top

>ref|NM_001002091.1| Danio rerio proteasome (prosome, macropain) 26S subunit, ATPase, 1b
            (psmc1b), mRNA
          Length = 1521

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 358  atgaaggtcaccaacaaggacttc 381
            ||||||||||||||| ||||||||
Sbjct: 1261 atgaaggtcaccaacgaggacttc 1284



to top

>dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome
          Length = 4646332

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 41      agcccaaaacagaagcgaac 60
               ||||||||||||||||||||
Sbjct: 3420307 agcccaaaacagaagcgaac 3420288



to top

>gb|AC096953.4| Homo sapiens BAC clone RP11-272G21 from 4, complete sequence
          Length = 184152

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 24     gctaaacaaatacatgtagc 43
              ||||||||||||||||||||
Sbjct: 107090 gctaaacaaatacatgtagc 107071



to top

>gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome
          Length = 4599354

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 41      agcccaaaacagaagcgaac 60
               ||||||||||||||||||||
Sbjct: 3392813 agcccaaaacagaagcgaac 3392794



to top

>emb|AL935145.12| Zebrafish DNA sequence from clone CH211-173B9 in linkage group 20,
             complete sequence
          Length = 157156

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 358   atgaaggtcaccaacaaggacttc 381
             ||||||||||||||| ||||||||
Sbjct: 43848 atgaaggtcaccaacgaggacttc 43825



to top

>gb|U18997.1|ECOUW67 Escherichia coli K-12 chromosomal region from 67.4 to 76.0 minutes
          Length = 372438

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 41     agcccaaaacagaagcgaac 60
              ||||||||||||||||||||
Sbjct: 201198 agcccaaaacagaagcgaac 201179



to top

>gb|AC140943.1| Gallus gallus BAC clone TAM32-50F18 from chromosome ul, complete
             sequence
          Length = 142253

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 85    agagttccaacaccataaaa 104
             ||||||||||||||||||||
Sbjct: 19024 agagttccaacaccataaaa 19005



to top

>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome
          Length = 5528445

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 41      agcccaaaacagaagcgaac 60
               ||||||||||||||||||||
Sbjct: 4222675 agcccaaaacagaagcgaac 4222656



to top

>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome
          Length = 5498450

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 41      agcccaaaacagaagcgaac 60
               ||||||||||||||||||||
Sbjct: 4155457 agcccaaaacagaagcgaac 4155438



to top

>gb|CP000034.1| Shigella dysenteriae Sd197, complete genome
          Length = 4369232

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 41      agcccaaaacagaagcgaac 60
               ||||||||||||||||||||
Sbjct: 3203060 agcccaaaacagaagcgaac 3203041



to top

>gb|CP000038.1| Shigella sonnei Ss046, complete genome
          Length = 4825265

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 41      agcccaaaacagaagcgaac 60
               ||||||||||||||||||||
Sbjct: 3593413 agcccaaaacagaagcgaac 3593394


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,223,267
Number of Sequences: 3902068
Number of extensions: 5223267
Number of successful extensions: 88957
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 88606
Number of HSP's gapped (non-prelim): 347
length of query: 631
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 608
effective length of database: 17,143,297,704
effective search space: 10423125004032
effective search space used: 10423125004032
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top