ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal13d23 |
|---|---|
| Clone Library Name | barley_pub |
>RL19_BRARE (Q6P5L3) 60S ribosomal protein L19| Length = 196 Score = 33.1 bits (74), Expect = 0.79 Identities = 23/71 (32%), Positives = 32/71 (45%) Frame = -3 Query: 569 MDQSGDNAMPSAQQQEQVIKKKFGGLIPKKPPLISKDHERAYFDSADWALGKSGQQGVAK 390 +D + N + +A ++Q+ K GLI KKP + H RA A K GV K Sbjct: 24 LDPNETNEIANANSRQQIRKLVKDGLIIKKPVTV---HSRARCRKNTLARRKGRHMGVGK 80 Query: 389 PKGPLEALRPK 357 KG A P+ Sbjct: 81 RKGTANARMPE 91
>YF9G_SCHPO (P79058) Hypothetical protein C10F6.16 in chromosome I| Length = 139 Score = 32.7 bits (73), Expect = 1.0 Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%) Frame = -3 Query: 527 QEQVIKKKFGGLIPKKPPLISKDHE-RAYFDSADWALGKSGQ 405 +EQ + + +G L +K L+ K + R YFDS D+AL K+G+ Sbjct: 33 EEQKLFRLYGRLPQRKDLLVQKLQQGRKYFDSGDYALNKAGK 74
>XYLT1_MOUSE (Q811B1) Xylosyltransferase 1 (EC 2.4.2.26) (Xylosyltransferase I)| (Peptide O-xylosyltransferase 1) Length = 953 Score = 32.0 bits (71), Expect = 1.8 Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 1/106 (0%) Frame = -3 Query: 590 NVGNSEPMD-QSGDNAMPSAQQQEQVIKKKFGGLIPKKPPLISKDHERAYFDSADWALGK 414 N NS P D ++ DN+ + + Q+Q K + KKPP K+H + D+ D G+ Sbjct: 144 NNENSVPKDFENVDNSNFAPRTQKQ----KHQPELAKKPPSRQKEHLQRKLDALDKRQGQ 199 Query: 413 SGQQGVAKPKGPLEALRPKLQPTXXXXXXXXXXXXXXSENEDGDGA 276 S KGP E L P+ + T + G G+ Sbjct: 200 S-----VLGKGPKEVLPPREKATGNSSQGKDLSRHSHARKSGGGGS 240
>RL19_XENLA (Q7ZYS1) 60S ribosomal protein L19| Length = 197 Score = 31.6 bits (70), Expect = 2.3 Identities = 21/71 (29%), Positives = 32/71 (45%) Frame = -3 Query: 569 MDQSGDNAMPSAQQQEQVIKKKFGGLIPKKPPLISKDHERAYFDSADWALGKSGQQGVAK 390 +D + N + +A ++Q+ K GLI +KP + H RA A K G+ K Sbjct: 24 LDPNETNEIANANSRQQIRKLVKDGLIIRKPVTV---HSRARCRKNTLARRKGRHMGIGK 80 Query: 389 PKGPLEALRPK 357 KG A P+ Sbjct: 81 RKGTANARMPE 91
>RL19_RAT (P84100) 60S ribosomal protein L19| Length = 196 Score = 31.2 bits (69), Expect = 3.0 Identities = 21/71 (29%), Positives = 32/71 (45%) Frame = -3 Query: 569 MDQSGDNAMPSAQQQEQVIKKKFGGLIPKKPPLISKDHERAYFDSADWALGKSGQQGVAK 390 +D + N + +A ++Q+ K GLI +KP + H RA A K G+ K Sbjct: 24 LDPNETNEIANANSRQQIRKLIKDGLIIRKPVTV---HSRARCRKNTLARRKGRHMGIGK 80 Query: 389 PKGPLEALRPK 357 KG A P+ Sbjct: 81 RKGTANARMPE 91
>RL19_PONPY (Q5RB99) 60S ribosomal protein L19| Length = 196 Score = 31.2 bits (69), Expect = 3.0 Identities = 21/71 (29%), Positives = 32/71 (45%) Frame = -3 Query: 569 MDQSGDNAMPSAQQQEQVIKKKFGGLIPKKPPLISKDHERAYFDSADWALGKSGQQGVAK 390 +D + N + +A ++Q+ K GLI +KP + H RA A K G+ K Sbjct: 24 LDPNETNEIANANSRQQIRKLIKDGLIIRKPVTV---HSRARCRKNTLARRKGRHMGIGK 80 Query: 389 PKGPLEALRPK 357 KG A P+ Sbjct: 81 RKGTANARMPE 91
>RL19_MOUSE (P84099) 60S ribosomal protein L19| Length = 196 Score = 31.2 bits (69), Expect = 3.0 Identities = 21/71 (29%), Positives = 32/71 (45%) Frame = -3 Query: 569 MDQSGDNAMPSAQQQEQVIKKKFGGLIPKKPPLISKDHERAYFDSADWALGKSGQQGVAK 390 +D + N + +A ++Q+ K GLI +KP + H RA A K G+ K Sbjct: 24 LDPNETNEIANANSRQQIRKLIKDGLIIRKPVTV---HSRARCRKNTLARRKGRHMGIGK 80 Query: 389 PKGPLEALRPK 357 KG A P+ Sbjct: 81 RKGTANARMPE 91
>RL19_MACFA (Q8HXN9) 60S ribosomal protein L19| Length = 196 Score = 31.2 bits (69), Expect = 3.0 Identities = 21/71 (29%), Positives = 32/71 (45%) Frame = -3 Query: 569 MDQSGDNAMPSAQQQEQVIKKKFGGLIPKKPPLISKDHERAYFDSADWALGKSGQQGVAK 390 +D + N + +A ++Q+ K GLI +KP + H RA A K G+ K Sbjct: 24 LDPNETNEIANANSRQQIRKLIKDGLIIRKPVTV---HSRARCRKNTLARRKGRHMGIGK 80 Query: 389 PKGPLEALRPK 357 KG A P+ Sbjct: 81 RKGTANARMPE 91
>RL19_HUMAN (P84098) 60S ribosomal protein L19| Length = 196 Score = 31.2 bits (69), Expect = 3.0 Identities = 21/71 (29%), Positives = 32/71 (45%) Frame = -3 Query: 569 MDQSGDNAMPSAQQQEQVIKKKFGGLIPKKPPLISKDHERAYFDSADWALGKSGQQGVAK 390 +D + N + +A ++Q+ K GLI +KP + H RA A K G+ K Sbjct: 24 LDPNETNEIANANSRQQIRKLIKDGLIIRKPVTV---HSRARCRKNTLARRKGRHMGIGK 80 Query: 389 PKGPLEALRPK 357 KG A P+ Sbjct: 81 RKGTANARMPE 91
>RL19_BOVIN (Q3T0W9) 60S ribosomal protein L19| Length = 196 Score = 31.2 bits (69), Expect = 3.0 Identities = 21/71 (29%), Positives = 32/71 (45%) Frame = -3 Query: 569 MDQSGDNAMPSAQQQEQVIKKKFGGLIPKKPPLISKDHERAYFDSADWALGKSGQQGVAK 390 +D + N + +A ++Q+ K GLI +KP + H RA A K G+ K Sbjct: 24 LDPNETNEIANANSRQQIRKLIKDGLIIRKPVTV---HSRARCRKNTLARRKGRHMGIGK 80 Query: 389 PKGPLEALRPK 357 KG A P+ Sbjct: 81 RKGTANARMPE 91
>YNP7_YEAST (P53897) Hypothetical 18.1 kDa protein in YGP1-YCK2 intergenic| region Length = 168 Score = 31.2 bits (69), Expect = 3.0 Identities = 19/54 (35%), Positives = 25/54 (46%) Frame = -3 Query: 563 QSGDNAMPSAQQQEQVIKKKFGGLIPKKPPLISKDHERAYFDSADWALGKSGQQ 402 +SG E + K +G L KK +R YFDS D+AL K+G Q Sbjct: 22 ESGTIDTSKFSPNEMKLYKMYGKLPSKKDIFKHTMQKRKYFDSGDYALQKAGIQ 75
>BLOK_PSEAE (O84955) Beta-lactamase OXA-20 precursor (EC 3.5.2.6)| (Penicillinase) Length = 266 Score = 31.2 bits (69), Expect = 3.0 Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 20/92 (21%) Frame = -3 Query: 590 NVGNSEPMDQSGD-----NAMPSAQQQEQVIKKKFGGLIPKKPPLISKDHERAYFD---- 438 N GN++P +SGD N SA +Q ++KK + +P +H+R D Sbjct: 145 NYGNADPSTKSGDYWIDGNLAISANEQISILKKLYRNELP-----FRVEHQRLVKDLMIV 199 Query: 437 --SADWAL----GKSGQQG-----VAKPKGPL 375 DW L G GQ G V P GP+ Sbjct: 200 EAKRDWILRAKTGWDGQMGWWVGWVEWPTGPV 231
>RL19_ICTPU (Q90YU8) 60S ribosomal protein L19| Length = 196 Score = 30.4 bits (67), Expect = 5.1 Identities = 21/71 (29%), Positives = 31/71 (43%) Frame = -3 Query: 569 MDQSGDNAMPSAQQQEQVIKKKFGGLIPKKPPLISKDHERAYFDSADWALGKSGQQGVAK 390 +D + N + +A ++ + K GLI KKP + H RA A K G+ K Sbjct: 24 LDPNETNEIANANSRQAIRKLVKDGLIIKKPVTV---HSRARCRKNTLARRKGRHMGIGK 80 Query: 389 PKGPLEALRPK 357 KG A P+ Sbjct: 81 RKGTANARMPE 91
>SYNPO_HUMAN (Q8N3V7) Synaptopodin| Length = 929 Score = 29.6 bits (65), Expect = 8.7 Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 7/89 (7%) Frame = -3 Query: 599 GHDNVGNSEPMDQSGDNAMPSAQQQEQVIKKKFGGLIPKKPPLISKDHERAYFD----SA 432 G ++ E + +SGD++ Q + K G +PP S++ + A S Sbjct: 51 GPTDLEEDEGVSRSGDDSACRVTQGTPQLPKALG----IQPPSCSREEQGASQHDDRASQ 106 Query: 431 DWALGKSGQQGVAKPK---GPLEALRPKL 354 DW + K+GQ A P GP A +P L Sbjct: 107 DWDVVKAGQMMTASPSPGPGPRVAQKPAL 135 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 94,603,293 Number of Sequences: 219361 Number of extensions: 1881744 Number of successful extensions: 5009 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 4816 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5009 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6598423128 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
