ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal12o18 |
|---|---|
| Clone Library Name | barley_pub |
>PSAF_HORVU (P13192) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) Length = 235 Score = 177 bits (448), Expect = 1e-44 Identities = 84/84 (100%), Positives = 84/84 (100%) Frame = -3 Query: 423 GDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGF 244 GDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGF Sbjct: 152 GDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGF 211 Query: 243 IWPVAAYRELINGDLVVDDADIGY 172 IWPVAAYRELINGDLVVDDADIGY Sbjct: 212 IWPVAAYRELINGDLVVDDADIGY 235
>PSAF_SPIOL (P12355) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) Length = 231 Score = 134 bits (337), Expect = 9e-32 Identities = 60/76 (78%), Positives = 68/76 (89%) Frame = -3 Query: 423 GDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGF 244 GDQRHWGEFITPG+LFLYIAGWIGWVGRSYLIA+ EKKP +EIIIDV LA+ ++ RGF Sbjct: 152 GDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAIRDEKKPTQKEIIIDVPLASSLLFRGF 211 Query: 243 IWPVAAYRELINGDLV 196 WPVAAYREL+NG+LV Sbjct: 212 SWPVAAYRELLNGELV 227
>PSAF_FLATR (P46486) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) Length = 232 Score = 132 bits (333), Expect = 3e-31 Identities = 58/76 (76%), Positives = 67/76 (88%) Frame = -3 Query: 423 GDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGF 244 GDQRHWGEFITPG+LFLYIAGWIGWVGRSYLIA+ EKKP +EIIIDV LA +++ RGF Sbjct: 153 GDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAIRDEKKPTQKEIIIDVPLATKLLFRGF 212 Query: 243 IWPVAAYRELINGDLV 196 WPVAAYRE +NG+L+ Sbjct: 213 SWPVAAYREYLNGELI 228
>PSAF_SYNY3 (P29256) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 165 Score = 95.5 bits (236), Expect = 5e-20 Identities = 42/78 (53%), Positives = 58/78 (74%) Frame = -3 Query: 411 HWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPV 232 H G+F+ P +LFLYIAGWIGWVGRSYLI + K P M+E++I+V LA + + GF+WP+ Sbjct: 83 HAGDFLIPSILFLYIAGWIGWVGRSYLIEIRESKNPEMQEVVINVPLAIKKMLGGFLWPL 142 Query: 231 AAYRELINGDLVVDDADI 178 AA E +G LV+ D++I Sbjct: 143 AAVGEYTSGKLVMKDSEI 160
>PSAF_PORPU (P51193) Photosystem I reaction center subunit III (PSI-F)| Length = 185 Score = 94.7 bits (234), Expect = 8e-20 Identities = 40/76 (52%), Positives = 56/76 (73%) Frame = -3 Query: 405 GEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAA 226 G+F+ PG+LFLYI GWIGWVGR YL++V+ KP +EII+DV LA + + GF WP+AA Sbjct: 105 GDFVFPGLLFLYITGWIGWVGRGYLLSVAKTSKPTEKEIILDVPLAVKFMSSGFAWPLAA 164 Query: 225 YRELINGDLVVDDADI 178 ++E +G L+ + DI Sbjct: 165 WQEFSSGQLIAPNDDI 180
>PSAF_ODOSI (P49483) Photosystem I reaction center subunit III (PSI-F)| Length = 185 Score = 94.0 bits (232), Expect = 1e-19 Identities = 44/82 (53%), Positives = 57/82 (69%) Frame = -3 Query: 423 GDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGF 244 G H EFI PG F+YI+GWIGWVGR YL AVS K P EIII+V LA +I+ G+ Sbjct: 99 GRWSHAAEFILPGFGFIYISGWIGWVGRKYLRAVSTTKNPTESEIIINVPLALKIMTTGY 158 Query: 243 IWPVAAYRELINGDLVVDDADI 178 IWP++A++E I+ DLV D ++ Sbjct: 159 IWPISAWQEFISNDLVALDEEV 180
>PSAF_GUITH (O78457) Photosystem I reaction center subunit III (PSI-F)| Length = 183 Score = 93.2 bits (230), Expect = 2e-19 Identities = 42/82 (51%), Positives = 56/82 (68%) Frame = -3 Query: 423 GDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGF 244 G H GEF+ PG+ FLYIAGWIGWVGR+Y+ S KP +EIIIDV +A I G+ Sbjct: 97 GRWSHAGEFMVPGLFFLYIAGWIGWVGRNYVQFASQTDKPTEKEIIIDVPVALSFISTGY 156 Query: 243 IWPVAAYRELINGDLVVDDADI 178 IWP AA++E +G+L+ + +I Sbjct: 157 IWPFAAFKEFTSGNLIAKEDEI 178
>PSAF_SYNEN (P0A402) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 164 Score = 92.0 bits (227), Expect = 5e-19 Identities = 43/76 (56%), Positives = 55/76 (72%) Frame = -3 Query: 405 GEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAA 226 G+F+ P VLFLYIAGWIGWVGR+YLIAV + +EIIIDV LA + + GF WP+AA Sbjct: 84 GDFLIPSVLFLYIAGWIGWVGRAYLIAVRNSGEANEKEIIIDVPLAIKCMLTGFAWPLAA 143 Query: 225 YRELINGDLVVDDADI 178 +EL +G+L D +I Sbjct: 144 LKELASGELTAKDNEI 159
>PSAF_SYNEL (P0A401) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 164 Score = 92.0 bits (227), Expect = 5e-19 Identities = 43/76 (56%), Positives = 55/76 (72%) Frame = -3 Query: 405 GEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAA 226 G+F+ P VLFLYIAGWIGWVGR+YLIAV + +EIIIDV LA + + GF WP+AA Sbjct: 84 GDFLIPSVLFLYIAGWIGWVGRAYLIAVRNSGEANEKEIIIDVPLAIKCMLTGFAWPLAA 143 Query: 225 YRELINGDLVVDDADI 178 +EL +G+L D +I Sbjct: 144 LKELASGELTAKDNEI 159
>PSAF_SYNP6 (P31083) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 159 Score = 91.3 bits (225), Expect = 9e-19 Identities = 42/78 (53%), Positives = 55/78 (70%) Frame = -3 Query: 411 HWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPV 232 H G+FI P +LFLYIAGWIGWVGRSYL A+ +K A +EI+IDV LA + GF WP+ Sbjct: 77 HAGDFIIPSLLFLYIAGWIGWVGRSYLQAIKSDKDAAGKEIVIDVPLAVKFSLTGFAWPL 136 Query: 231 AAYRELINGDLVVDDADI 178 AA++E +G L+ +I Sbjct: 137 AAFQEFSSGKLLAKADEI 154
>PSAF_ANAVT (P31091) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 164 Score = 89.4 bits (220), Expect = 3e-18 Identities = 39/76 (51%), Positives = 54/76 (71%) Frame = -3 Query: 405 GEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAA 226 G+F+ P +LFLYIAGWIGWVGR+YL A+ + +EI +D+ LA II GF WP AA Sbjct: 84 GDFLIPSILFLYIAGWIGWVGRAYLQAIKKDSDTEQKEIQLDLGLALPIIATGFAWPAAA 143 Query: 225 YRELINGDLVVDDADI 178 +EL++G+L D++I Sbjct: 144 VKELLSGELTAKDSEI 159
>PSAF_ANASP (P58564) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 164 Score = 88.6 bits (218), Expect = 6e-18 Identities = 38/76 (50%), Positives = 54/76 (71%) Frame = -3 Query: 405 GEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAA 226 G+F+ P +LFLYIAGWIGWVGR+YL A+ + +EI +D+ +A II GF WP AA Sbjct: 84 GDFLIPSILFLYIAGWIGWVGRAYLQAIKKDSDTEQKEIQLDLGIALPIIATGFAWPAAA 143 Query: 225 YRELINGDLVVDDADI 178 +EL++G+L D++I Sbjct: 144 VKELLSGELTAKDSEI 159
>PSAF_CYAPA (P48115) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 186 Score = 87.8 bits (216), Expect = 1e-17 Identities = 41/82 (50%), Positives = 55/82 (67%) Frame = -3 Query: 423 GDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGF 244 G H GEF PG+LFLYIAG+IGW GRSYL AV+ +EIIID+ +A + + +GF Sbjct: 100 GRWSHAGEFTIPGLLFLYIAGFIGWSGRSYLQAVAASDNSTEKEIIIDIPVALQSVSKGF 159 Query: 243 IWPVAAYRELINGDLVVDDADI 178 +WP+AA +E +G L D +I Sbjct: 160 VWPLAALQEFSSGKLTARDEEI 181
>PSAF_CYACA (Q9TLW6) Photosystem I reaction center subunit III (PSI-F)| Length = 187 Score = 82.8 bits (203), Expect = 3e-16 Identities = 39/82 (47%), Positives = 50/82 (60%) Frame = -3 Query: 423 GDQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGF 244 GD +H GEF P VLF+YIAGWIGW G+ YL KP EIIID+ A + + GF Sbjct: 101 GDWQHSGEFFIPSVLFIYIAGWIGWAGKGYLQYSKTLTKPNENEIIIDLPRALKYMFSGF 160 Query: 243 IWPVAAYRELINGDLVVDDADI 178 WP+ A +E NG L+ + +I Sbjct: 161 AWPILALKEFKNGSLLASNDEI 182
>PSAF_CHLRE (P12356) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) (P21 protein) Length = 227 Score = 80.5 bits (197), Expect = 2e-15 Identities = 41/78 (52%), Positives = 53/78 (67%) Frame = -3 Query: 411 HWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPV 232 H GE P FLY+AG+IG+VGR YLIAV GE KP +EIIIDV LA ++ +G WP+ Sbjct: 145 HAGEVFIPTFGFLYVAGYIGYVGRQYLIAVKGEAKPTDKEIIIDVPLATKLAWQGAGWPL 204 Query: 231 AAYRELINGDLVVDDADI 178 AA +EL G L+ + +I Sbjct: 205 AAVQELQRGTLLEKEENI 222
>PSAF_MASLA (O31127) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 165 Score = 79.7 bits (195), Expect = 3e-15 Identities = 36/79 (45%), Positives = 52/79 (65%), Gaps = 1/79 (1%) Frame = -3 Query: 411 HWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGE-KKPAMREIIIDVELAARIIPRGFIWP 235 H G+F+ P +LFLYIAGWIGWVGR+YL + + +EI I++ +A I+ GF WP Sbjct: 82 HAGDFLIPSILFLYIAGWIGWVGRAYLQTIKKQGSNVEQKEIQIELPIALPIMLSGFAWP 141 Query: 234 VAAYRELINGDLVVDDADI 178 AA +E ++G+L D +I Sbjct: 142 AAAIKEFLSGELTAKDEEI 160
>PSAF_PROMA (Q9X7I4) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 183 Score = 72.8 bits (177), Expect = 3e-13 Identities = 36/81 (44%), Positives = 50/81 (61%) Frame = -3 Query: 420 DQRHWGEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFI 241 ++ H G+ + PG +F+Y+AG IGW GR YL A K PA EIIID LA + + +G Sbjct: 97 NRHHEGDILIPGHIFIYVAGIIGWSGREYLRASKKTKNPAENEIIIDFALARQCLIKGAA 156 Query: 240 WPVAAYRELINGDLVVDDADI 178 WPV A ++ +GDL D +I Sbjct: 157 WPVEANKQGRSGDLREKDENI 177
>PSAF_GLOVI (Q7NH05) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 181 Score = 65.1 bits (157), Expect = 7e-11 Identities = 35/73 (47%), Positives = 45/73 (61%) Frame = -3 Query: 405 GEFITPGVLFLYIAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAA 226 G+F+ P VLFL+IAG +GW GR YL E K EIIID+ A + + G IWPV A Sbjct: 105 GDFLIPSVLFLWIAGALGWAGRLYL----AESKGPEDEIIIDLPKAIKCLLLGLIWPVQA 160 Query: 225 YRELINGDLVVDD 187 ELI+G + V + Sbjct: 161 IPELISGKIRVPE 173
>RDRP_MRNV (Q6XNL5) RNA-directed RNA polymerase (EC 2.7.7.48) (RdRp) (RNA| replicase) Length = 1045 Score = 30.8 bits (68), Expect = 1.4 Identities = 16/40 (40%), Positives = 21/40 (52%) Frame = -3 Query: 141 SRSQVRWAAEDEGLWCRSVWAWCRS**DHGEMEPLLYLRN 22 S +QV + + G W VW WC D+GE LYL+N Sbjct: 217 SDNQVDYRVDGGGRWQHKVWNWC----DYGE---FLYLKN 249
>EFTS_RALSO (Q8XZJ0) Elongation factor Ts (EF-Ts)| Length = 292 Score = 29.6 bits (65), Expect = 3.1 Identities = 17/40 (42%), Positives = 24/40 (60%) Frame = +1 Query: 304 GLLLAADGDEVAASDPADPAGDVEEEHAGGDELAPVPLVA 423 G+++A DGDEVAA D A A ++ DE+ P L+A Sbjct: 159 GVMVAFDGDEVAAKDVAMHAAAMKPVALSSDEV-PAELIA 197
>YHBP_ECO57 (Q8XA94) UPF0306 protein yhbP| Length = 147 Score = 29.3 bits (64), Expect = 4.0 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Frame = -3 Query: 168 LAAMRAWLASRSQVRWAAEDEG-LWCRSVW 82 L A+ WLA + V W + EG LWC + + Sbjct: 4 LTAISRWLAKQHVVTWCVQQEGELWCANAF 33
>YHBP_ECOL6 (Q8FD95) UPF0306 protein yhbP| Length = 140 Score = 29.3 bits (64), Expect = 4.0 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Frame = -3 Query: 168 LAAMRAWLASRSQVRWAAEDEG-LWCRSVW 82 L A+ WLA + V W + EG LWC + + Sbjct: 4 LTAISRWLAKQHVVTWCVQQEGELWCANAF 33
>YHBP_SHIFL (P67763) UPF0306 protein yhbP| Length = 147 Score = 28.9 bits (63), Expect = 5.3 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Frame = -3 Query: 168 LAAMRAWLASRSQVRWAAEDEG-LWCRSVW 82 L A+ WLA + V W + EG LWC + + Sbjct: 4 LIAISRWLAKQHVVTWCVQQEGELWCANAF 33
>YHBP_ECOLI (P67762) UPF0306 protein yhbP| Length = 147 Score = 28.9 bits (63), Expect = 5.3 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Frame = -3 Query: 168 LAAMRAWLASRSQVRWAAEDEG-LWCRSVW 82 L A+ WLA + V W + EG LWC + + Sbjct: 4 LIAISRWLAKQHVVTWCVQQEGELWCANAF 33
>IF39_HUMAN (P55884) Eukaryotic translation initiation factor 3 subunit 9| (eIF-3 eta) (eIF3 p116) (eIF3 p110) (eIF3b) (Prt1 homolog) (hPrt1) Length = 814 Score = 28.5 bits (62), Expect = 6.9 Identities = 15/31 (48%), Positives = 16/31 (51%) Frame = +1 Query: 322 DGDEVAASDPADPAGDVEEEHAGGDELAPVP 414 D DE + SDP D DV EE GD L P Sbjct: 147 DADEPSFSDPEDFVDDVSEEELLGDVLKDRP 177
>CLIC5_BOVIN (P35526) Chloride intracellular channel protein 5 (Chlorine channel| protein p64) Length = 437 Score = 28.1 bits (61), Expect = 9.0 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%) Frame = +1 Query: 316 AADGDEVAASDPADPAG-DVEEEHAGGDEL 402 A+D +E ASDP +P G D EE G+E+ Sbjct: 126 ASDPEEPQASDPEEPQGPDPEEPQENGNEM 155
>AGI_URTDI (P11218) Lectin/endochitinase precursor (EC 3.2.1.14) (Agglutinin)| (UDA) Length = 372 Score = 28.1 bits (61), Expect = 9.0 Identities = 10/21 (47%), Positives = 12/21 (57%) Frame = -3 Query: 102 LWCRSVWAWCRS**DHGEMEP 40 LWC S+W WC G+ EP Sbjct: 38 LWCCSIWGWC------GDSEP 52
>MADCA_HUMAN (Q13477) Mucosal addressin cell adhesion molecule 1 precursor| (MAdCAM-1) (hMAdCAM-1) Length = 406 Score = 28.1 bits (61), Expect = 9.0 Identities = 13/25 (52%), Positives = 14/25 (56%) Frame = +3 Query: 42 VPFLHDPISSYTKPTQIDTTSPHPP 116 +P LH P T P DTTSP PP Sbjct: 221 IPVLHSP----TSPEPPDTTSPEPP 241
>PPZ1_YEAST (P26570) Serine/threonine-protein phosphatase PP-Z1 (EC 3.1.3.16)| Length = 691 Score = 28.1 bits (61), Expect = 9.0 Identities = 10/17 (58%), Positives = 14/17 (82%) Frame = +2 Query: 74 HQAHTDRHHKPSSSAAH 124 H +HT+R+H PSSS +H Sbjct: 79 HSSHTNRYHFPSSSHSH 95 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,343,161 Number of Sequences: 219361 Number of extensions: 925168 Number of successful extensions: 3102 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 2863 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3097 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2336739400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
