ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal6l02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NPP_HORVU (Q687E1) Nucleotide pyrophosphatase/phosphodiesterase ... 214 6e-69
2PPA_ASPFI (Q12546) Acid phosphatase precursor (EC 3.1.3.2) (pH 6... 38 0.027
3PPAF_ARATH (Q38924) Iron(III)-zinc(II) purple acid phosphatase p... 30 5.6

>NPP_HORVU (Q687E1) Nucleotide pyrophosphatase/phosphodiesterase (EC 3.-.-.-)|
           (Fragments)
          Length = 368

 Score =  214 bits (544), Expect(3) = 6e-69
 Identities = 100/100 (100%), Positives = 100/100 (100%)
 Frame = -3

Query: 502 QCVNADKTHYSGTMNGTIFVVAGGGGSHLSSYTTAIPKWSIFRDHDYGFTKLTAFNHSSL 323
           QCVNADKTHYSGTMNGTIFVVAGGGGSHLSSYTTAIPKWSIFRDHDYGFTKLTAFNHSSL
Sbjct: 269 QCVNADKTHYSGTMNGTIFVVAGGGGSHLSSYTTAIPKWSIFRDHDYGFTKLTAFNHSSL 328

Query: 322 LFEYMKSSDGKVYDSFTIHRDYRDVLSCVHDSCFPTTLAS 203
           LFEYMKSSDGKVYDSFTIHRDYRDVLSCVHDSCFPTTLAS
Sbjct: 329 LFEYMKSSDGKVYDSFTIHRDYRDVLSCVHDSCFPTTLAS 368



 Score = 52.8 bits (125), Expect(3) = 6e-69
 Identities = 23/23 (100%), Positives = 23/23 (100%)
 Frame = -1

Query: 615 EPEGRESLQKLWQRYRVDIAYFG 547
           EPEGRESLQKLWQRYRVDIAYFG
Sbjct: 232 EPEGRESLQKLWQRYRVDIAYFG 254



 Score = 35.4 bits (80), Expect(3) = 6e-69
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = -2

Query: 545 HVHNYERTCPLYQ 507
           HVHNYERTCPLYQ
Sbjct: 255 HVHNYERTCPLYQ 267



to top

>PPA_ASPFI (Q12546) Acid phosphatase precursor (EC 3.1.3.2) (pH 6-optimum acid|
           phosphatase) (APase6)
          Length = 614

 Score = 37.7 bits (86), Expect = 0.027
 Identities = 16/32 (50%), Positives = 23/32 (71%)
 Frame = -3

Query: 364 YGFTKLTAFNHSSLLFEYMKSSDGKVYDSFTI 269
           YGF+KLT FN ++L +E ++  DG V DS T+
Sbjct: 569 YGFSKLTIFNETALKWELIRGDDGTVGDSLTL 600



to top

>PPAF_ARATH (Q38924) Iron(III)-zinc(II) purple acid phosphatase precursor (EC|
           3.1.3.2) (PAP)
          Length = 469

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = -3

Query: 451 IFVVAGGGGSHLSSYTTAI---PKWSIFRDHDYGFTKLTAFNHSSLLFEYMKSSDG 293
           I++  G GG+     T  +   PK+S FR+  +G   L   N +   F + ++ DG
Sbjct: 388 IYITIGDGGNSEGLLTDMMQPQPKYSAFREASFGHGLLEIKNRTHAYFSWNRNQDG 443


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,041,229
Number of Sequences: 219361
Number of extensions: 1314269
Number of successful extensions: 3226
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3221
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5538924943
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top