ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal13d11 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_185970.1| Oryza sativa (japonica cultivar-group), mRNA Length = 861 Score = 335 bits (169), Expect = 1e-88 Identities = 439/529 (82%) Strand = Plus / Minus Query: 224 tacaagtggggcatcaccgactcctcgtgctcgggccggtggaggttatgcaggatgtag 283 ||||||| ||||| ||||| || || || || |||| ||| ||||| ||||||||||| Sbjct: 860 tacaagtttggcataaccgagtcatcctgttcaggcctgtgaaggttgtgcaggatgtac 801 Query: 284 agggaggccgaggagaggaagatgcagaccgagtagctgagcaggtccagccccgtggtg 343 || || || || || ||||||||||||||||||||||| |||||||||| |||||| || Sbjct: 800 agtgaagcggacgacaggaagatgcagaccgagtagctcagcaggtccaaccccgttgtt 741 Query: 344 atcttcaccatcttgctccgctcgaacatcttcaccagcaggatcatcacgatgacgtgc 403 ||||||||||| ||||||| |||||||||||||||||| |||||||| |||||||| ||| Sbjct: 740 atcttcaccattttgctcctctcgaacatcttcaccagaaggatcatgacgatgacatgc 681 Query: 404 ccaaccttggtcttgagctcgtccagggacgtgatcttcatccacttcggcctctccttc 463 || || ||||| || || ||||||||||| || |||||||||||||| || || ||||| Sbjct: 680 cctactttggttttcagttcgtccagggaggtaatcttcatccactttggtctttccttt 621 Query: 464 agagcgaacatcccgaacagcgacgatccttgcagagcccggtcggatccggaaggcaga 523 | ||| |||||||| || | || ||||| |||||||| | ||| || | ||||| | | Sbjct: 620 aaagcaaacatcccaaataaggatgatccctgcagagctctgtcagactcagaaggaaca 561 Query: 524 tcgttggacgcgttgctgatgaacagcccgtagagacccatcccgaagatcagcatgacg 583 || | || | |||||||||||||||||||| | |||||||| |||||||||||||| Sbjct: 560 tcagtagaagtattgctgatgaacagcccgtacaagcccatcccaaagatcagcatgact 501 Query: 584 gtgccagcaagatacacatcaatggcctcgacgaccttgaggaccatctgccctgtatgg 643 || ||||| ||||| ||||||||||| ||||| || |||||||||||||||||||||||| Sbjct: 500 gttccagcgagataaacatcaatggcttcgacaactttgaggaccatctgccctgtatgg 441 Query: 644 acacctttggcgcagctcgtccagtagacacaataggcctcttttatgtacacacatccg 703 || |||||| |||| || ||| || || | || |||||||||||||| ||||| || Sbjct: 440 acgcctttgagacagcccgaccaatacacgctgtaagcctcttttatgtaaacacaacca 381 Query: 704 ttgaggaagcagaggagggagcccgccagcgatccggcgacggcgagaa 752 |||||||||||||||||||| || ||||| |||||||| || ||||||| Sbjct: 380 ttgaggaagcagaggagggatccggccagtgatccggcaaccgcgagaa 332
>gb|AY108992.1| Zea mays PCO062765 mRNA sequence Length = 499 Score = 214 bits (108), Expect = 3e-52 Identities = 249/296 (84%) Strand = Plus / Minus Query: 272 tgcaggatgtagagggaggccgaggagaggaagatgcagaccgagtagctgagcaggtcc 331 |||||||||||||| || || || || | ||||||||||| |||||||||||| |||||| Sbjct: 307 tgcaggatgtagagagaagctgacgacaagaagatgcagatcgagtagctgaggaggtcc 248 Query: 332 agccccgtggtgatcttcaccatcttgctccgctcgaacatcttcaccagcaggatcatc 391 |||||||||| ||| |||||||||||||| ||||||||||||||| || || |||||| Sbjct: 247 agccccgtggctatcgtcaccatcttgctcttctcgaacatcttcacaagtagaatcatc 188 Query: 392 acgatgacgtgcccaaccttggtcttgagctcgtccagggacgtgatcttcatccacttc 451 |||||||||||||| || || |||||||||||||| || || ||||| |||||||||||| Sbjct: 187 acgatgacgtgccccacttttgtcttgagctcgtcaagcgaggtgatgttcatccacttc 128 Query: 452 ggcctctccttcagagcgaacatcccgaacagcgacgatccttgcagagcccggtcggat 511 || | ||||||| ||||||||||||||||| |||||| || || || ||||||||| Sbjct: 127 gggcgttccttcaaagcgaacatcccgaacaacgacgagccgctgagggcacggtcggat 68 Query: 512 ccggaaggcagatcgttggacgcgttgctgatgaacagcccgtagagacccatccc 567 | | ||| | | || || |||||||||||||| || ||||||||||||||||| Sbjct: 67 tcaggaggaacaccggcgggagcgttgctgatgaagaggccgtagagacccatccc 12
>ref|XM_479396.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1073 Score = 192 bits (97), Expect = 1e-45 Identities = 169/193 (87%) Strand = Plus / Minus Query: 534 cgttgctgatgaacagcccgtagagacccatcccgaagatcagcatgacggtgccagcaa 593 ||||||||||||||||||| || ||||||||||| || ||||||||||| || ||||||| Sbjct: 578 cgttgctgatgaacagcccatacagacccatcccaaaaatcagcatgactgttccagcaa 519 Query: 594 gatacacatcaatggcctcgacgaccttgaggaccatctgccctgtatggacacctttgg 653 |||||||||| || |||||||||| | ||||||||||||||||||||||||||||| | Sbjct: 518 gatacacatcgatagcctcgacgagcctgaggaccatctgccctgtatggacacctctaa 459 Query: 654 cgcagctcgtccagtagacacaataggcctcttttatgtacacacatccgttgaggaagc 713 | ||||| |||||||||||| || || ||||| ||||||||||| || ||||||||| Sbjct: 458 cacagcttgtccagtagacatggtatgcttctttaatgtacacacaaccactgaggaagc 399 Query: 714 agaggagggagcc 726 ||||||||||||| Sbjct: 398 agaggagggagcc 386 Score = 168 bits (85), Expect = 2e-38 Identities = 178/209 (85%) Strand = Plus / Minus Query: 266 aggttatgcaggatgtagagggaggccgaggagaggaagatgcagaccgagtagctgagc 325 ||||| ||||||||||| ||||| ||||| || | |||||||||||||| |||||||||| Sbjct: 843 aggttgtgcaggatgtacagggaagccgacgacaagaagatgcagaccgcgtagctgagc 784 Query: 326 aggtccagccccgtggtgatcttcaccatcttgctccgctcgaacatcttcaccagcagg 385 ||||||| ||||||||||| | |||||||||||||| |||||||||||||||||| || Sbjct: 783 aggtccattcccgtggtgatgtgcaccatcttgctcctctcgaacatcttcaccaggaga 724 Query: 386 atcatcacgatgacgtgcccaaccttggtcttgagctcgtccagggacgtgatcttcatc 445 ||||||||||||| ||| || | ||| || |||||||| || || || |||| ||||| Sbjct: 723 atcatcacgatgatgtggcccagcttcgttttgagctcatcgagagagctgattctcatc 664 Query: 446 cacttcggcctctccttcagagcgaacat 474 ||| |||| |||||||||| ||| ||||| Sbjct: 663 cacctcggtctctccttcaaagcaaacat 635
>dbj|AK060061.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-F12, full insert sequence Length = 1073 Score = 192 bits (97), Expect = 1e-45 Identities = 169/193 (87%) Strand = Plus / Minus Query: 534 cgttgctgatgaacagcccgtagagacccatcccgaagatcagcatgacggtgccagcaa 593 ||||||||||||||||||| || ||||||||||| || ||||||||||| || ||||||| Sbjct: 578 cgttgctgatgaacagcccatacagacccatcccaaaaatcagcatgactgttccagcaa 519 Query: 594 gatacacatcaatggcctcgacgaccttgaggaccatctgccctgtatggacacctttgg 653 |||||||||| || |||||||||| | ||||||||||||||||||||||||||||| | Sbjct: 518 gatacacatcgatagcctcgacgagcctgaggaccatctgccctgtatggacacctctaa 459 Query: 654 cgcagctcgtccagtagacacaataggcctcttttatgtacacacatccgttgaggaagc 713 | ||||| |||||||||||| || || ||||| ||||||||||| || ||||||||| Sbjct: 458 cacagcttgtccagtagacatggtatgcttctttaatgtacacacaaccactgaggaagc 399 Query: 714 agaggagggagcc 726 ||||||||||||| Sbjct: 398 agaggagggagcc 386 Score = 168 bits (85), Expect = 2e-38 Identities = 178/209 (85%) Strand = Plus / Minus Query: 266 aggttatgcaggatgtagagggaggccgaggagaggaagatgcagaccgagtagctgagc 325 ||||| ||||||||||| ||||| ||||| || | |||||||||||||| |||||||||| Sbjct: 843 aggttgtgcaggatgtacagggaagccgacgacaagaagatgcagaccgcgtagctgagc 784 Query: 326 aggtccagccccgtggtgatcttcaccatcttgctccgctcgaacatcttcaccagcagg 385 ||||||| ||||||||||| | |||||||||||||| |||||||||||||||||| || Sbjct: 783 aggtccattcccgtggtgatgtgcaccatcttgctcctctcgaacatcttcaccaggaga 724 Query: 386 atcatcacgatgacgtgcccaaccttggtcttgagctcgtccagggacgtgatcttcatc 445 ||||||||||||| ||| || | ||| || |||||||| || || || |||| ||||| Sbjct: 723 atcatcacgatgatgtggcccagcttcgttttgagctcatcgagagagctgattctcatc 664 Query: 446 cacttcggcctctccttcagagcgaacat 474 ||| |||| |||||||||| ||| ||||| Sbjct: 663 cacctcggtctctccttcaaagcaaacat 635
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 188 bits (95), Expect = 2e-44 Identities = 194/227 (85%) Strand = Plus / Minus Query: 224 tacaagtggggcatcaccgactcctcgtgctcgggccggtggaggttatgcaggatgtag 283 ||||||| ||||| ||||| || || || || |||| ||| ||||| ||||||||||| Sbjct: 27579477 tacaagtttggcataaccgagtcatcctgttcaggcctgtgaaggttgtgcaggatgtac 27579418 Query: 284 agggaggccgaggagaggaagatgcagaccgagtagctgagcaggtccagccccgtggtg 343 || || || || || ||||||||||||||||||||||| |||||||||| |||||| || Sbjct: 27579417 agtgaagcggacgacaggaagatgcagaccgagtagctcagcaggtccaaccccgttgtt 27579358 Query: 344 atcttcaccatcttgctccgctcgaacatcttcaccagcaggatcatcacgatgacgtgc 403 ||||||||||| ||||||| |||||||||||||||||| |||||||| |||||||| ||| Sbjct: 27579357 atcttcaccattttgctcctctcgaacatcttcaccagaaggatcatgacgatgacatgc 27579298 Query: 404 ccaaccttggtcttgagctcgtccagggacgtgatcttcatccactt 450 || || ||||| || || ||||||||||| || |||||||||||||| Sbjct: 27579297 cctactttggttttcagttcgtccagggaggtaatcttcatccactt 27579251 Score = 159 bits (80), Expect = 2e-35 Identities = 167/196 (85%) Strand = Plus / Minus Query: 266 aggttatgcaggatgtagagggaggccgaggagaggaagatgcagaccgagtagctgagc 325 ||||| ||||||||||| ||||| ||||| || | |||||||||||||| |||||||||| Sbjct: 27576141 aggttgtgcaggatgtacagggaagccgacgacaagaagatgcagaccgcgtagctgagc 27576082 Query: 326 aggtccagccccgtggtgatcttcaccatcttgctccgctcgaacatcttcaccagcagg 385 ||||||| ||||||||||| | |||||||||||||| |||||||||||||||||| || Sbjct: 27576081 aggtccattcccgtggtgatgtgcaccatcttgctcctctcgaacatcttcaccaggaga 27576022 Query: 386 atcatcacgatgacgtgcccaaccttggtcttgagctcgtccagggacgtgatcttcatc 445 ||||||||||||| ||| || | ||| || |||||||| || || || |||| ||||| Sbjct: 27576021 atcatcacgatgatgtggcccagcttcgttttgagctcatcgagagagctgattctcatc 27575962 Query: 446 cacttcggcctctcct 461 ||| |||| ||||||| Sbjct: 27575961 cacctcggtctctcct 27575946 Score = 91.7 bits (46), Expect = 3e-15 Identities = 64/70 (91%) Strand = Plus / Minus Query: 534 cgttgctgatgaacagcccgtagagacccatcccgaagatcagcatgacggtgccagcaa 593 ||||||||||||||||||| || ||||||||||| || ||||||||||| || ||||||| Sbjct: 27575711 cgttgctgatgaacagcccatacagacccatcccaaaaatcagcatgactgttccagcaa 27575652 Query: 594 gatacacatc 603 |||||||||| Sbjct: 27575651 gatacacatc 27575642 Score = 79.8 bits (40), Expect = 1e-11 Identities = 79/92 (85%) Strand = Plus / Minus Query: 608 gcctcgacgaccttgaggaccatctgccctgtatggacacctttggcgcagctcgtccag 667 |||||||||| | ||||||||||||||||||||||||||||| | | ||||| |||||| Sbjct: 27575455 gcctcgacgagcctgaggaccatctgccctgtatggacacctctaacacagcttgtccag 27575396 Query: 668 tagacacaataggcctcttttatgtacacaca 699 |||||| || || ||||| ||||||||||| Sbjct: 27575395 tagacatggtatgcttctttaatgtacacaca 27575364 Score = 71.9 bits (36), Expect = 3e-09 Identities = 60/68 (88%) Strand = Plus / Minus Query: 536 ttgctgatgaacagcccgtagagacccatcccgaagatcagcatgacggtgccagcaaga 595 |||||||||||||||||||| | |||||||| |||||||||||||| || ||||| ||| Sbjct: 27578743 ttgctgatgaacagcccgtacaagcccatcccaaagatcagcatgactgttccagcgaga 27578684 Query: 596 tacacatc 603 || ||||| Sbjct: 27578683 taaacatc 27578676 Score = 67.9 bits (34), Expect = 5e-08 Identities = 46/50 (92%) Strand = Plus / Minus Query: 603 caatggcctcgacgaccttgaggaccatctgccctgtatggacacctttg 652 ||||||| ||||| || |||||||||||||||||||||||||| |||||| Sbjct: 27577999 caatggcttcgacaactttgaggaccatctgccctgtatggacgcctttg 27577950 Score = 58.0 bits (29), Expect = 4e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 704 ttgaggaagcagaggagggagcccgccagcgatccggcgacggcgagaa 752 |||||||||||||||||||| || ||||| |||||||| || ||||||| Sbjct: 27577729 ttgaggaagcagaggagggatccggccagtgatccggcaaccgcgagaa 27577681 Score = 44.1 bits (22), Expect = 0.66 Identities = 22/22 (100%) Strand = Plus / Minus Query: 705 tgaggaagcagaggagggagcc 726 |||||||||||||||||||||| Sbjct: 27575265 tgaggaagcagaggagggagcc 27575244
>dbj|AP005184.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0047B07 Length = 157797 Score = 188 bits (95), Expect = 2e-44 Identities = 194/227 (85%) Strand = Plus / Minus Query: 224 tacaagtggggcatcaccgactcctcgtgctcgggccggtggaggttatgcaggatgtag 283 ||||||| ||||| ||||| || || || || |||| ||| ||||| ||||||||||| Sbjct: 36470 tacaagtttggcataaccgagtcatcctgttcaggcctgtgaaggttgtgcaggatgtac 36411 Query: 284 agggaggccgaggagaggaagatgcagaccgagtagctgagcaggtccagccccgtggtg 343 || || || || || ||||||||||||||||||||||| |||||||||| |||||| || Sbjct: 36410 agtgaagcggacgacaggaagatgcagaccgagtagctcagcaggtccaaccccgttgtt 36351 Query: 344 atcttcaccatcttgctccgctcgaacatcttcaccagcaggatcatcacgatgacgtgc 403 ||||||||||| ||||||| |||||||||||||||||| |||||||| |||||||| ||| Sbjct: 36350 atcttcaccattttgctcctctcgaacatcttcaccagaaggatcatgacgatgacatgc 36291 Query: 404 ccaaccttggtcttgagctcgtccagggacgtgatcttcatccactt 450 || || ||||| || || ||||||||||| || |||||||||||||| Sbjct: 36290 cctactttggttttcagttcgtccagggaggtaatcttcatccactt 36244 Score = 159 bits (80), Expect = 2e-35 Identities = 167/196 (85%) Strand = Plus / Minus Query: 266 aggttatgcaggatgtagagggaggccgaggagaggaagatgcagaccgagtagctgagc 325 ||||| ||||||||||| ||||| ||||| || | |||||||||||||| |||||||||| Sbjct: 33134 aggttgtgcaggatgtacagggaagccgacgacaagaagatgcagaccgcgtagctgagc 33075 Query: 326 aggtccagccccgtggtgatcttcaccatcttgctccgctcgaacatcttcaccagcagg 385 ||||||| ||||||||||| | |||||||||||||| |||||||||||||||||| || Sbjct: 33074 aggtccattcccgtggtgatgtgcaccatcttgctcctctcgaacatcttcaccaggaga 33015 Query: 386 atcatcacgatgacgtgcccaaccttggtcttgagctcgtccagggacgtgatcttcatc 445 ||||||||||||| ||| || | ||| || |||||||| || || || |||| ||||| Sbjct: 33014 atcatcacgatgatgtggcccagcttcgttttgagctcatcgagagagctgattctcatc 32955 Query: 446 cacttcggcctctcct 461 ||| |||| ||||||| Sbjct: 32954 cacctcggtctctcct 32939 Score = 91.7 bits (46), Expect = 3e-15 Identities = 64/70 (91%) Strand = Plus / Minus Query: 534 cgttgctgatgaacagcccgtagagacccatcccgaagatcagcatgacggtgccagcaa 593 ||||||||||||||||||| || ||||||||||| || ||||||||||| || ||||||| Sbjct: 32704 cgttgctgatgaacagcccatacagacccatcccaaaaatcagcatgactgttccagcaa 32645 Query: 594 gatacacatc 603 |||||||||| Sbjct: 32644 gatacacatc 32635 Score = 79.8 bits (40), Expect = 1e-11 Identities = 79/92 (85%) Strand = Plus / Minus Query: 608 gcctcgacgaccttgaggaccatctgccctgtatggacacctttggcgcagctcgtccag 667 |||||||||| | ||||||||||||||||||||||||||||| | | ||||| |||||| Sbjct: 32448 gcctcgacgagcctgaggaccatctgccctgtatggacacctctaacacagcttgtccag 32389 Query: 668 tagacacaataggcctcttttatgtacacaca 699 |||||| || || ||||| ||||||||||| Sbjct: 32388 tagacatggtatgcttctttaatgtacacaca 32357 Score = 71.9 bits (36), Expect = 3e-09 Identities = 60/68 (88%) Strand = Plus / Minus Query: 536 ttgctgatgaacagcccgtagagacccatcccgaagatcagcatgacggtgccagcaaga 595 |||||||||||||||||||| | |||||||| |||||||||||||| || ||||| ||| Sbjct: 35736 ttgctgatgaacagcccgtacaagcccatcccaaagatcagcatgactgttccagcgaga 35677 Query: 596 tacacatc 603 || ||||| Sbjct: 35676 taaacatc 35669 Score = 67.9 bits (34), Expect = 5e-08 Identities = 46/50 (92%) Strand = Plus / Minus Query: 603 caatggcctcgacgaccttgaggaccatctgccctgtatggacacctttg 652 ||||||| ||||| || |||||||||||||||||||||||||| |||||| Sbjct: 34992 caatggcttcgacaactttgaggaccatctgccctgtatggacgcctttg 34943 Score = 58.0 bits (29), Expect = 4e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 704 ttgaggaagcagaggagggagcccgccagcgatccggcgacggcgagaa 752 |||||||||||||||||||| || ||||| |||||||| || ||||||| Sbjct: 34722 ttgaggaagcagaggagggatccggccagtgatccggcaaccgcgagaa 34674 Score = 44.1 bits (22), Expect = 0.66 Identities = 22/22 (100%) Strand = Plus / Minus Query: 705 tgaggaagcagaggagggagcc 726 |||||||||||||||||||||| Sbjct: 32258 tgaggaagcagaggagggagcc 32237
>dbj|AP005182.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0018C07 Length = 141707 Score = 159 bits (80), Expect = 2e-35 Identities = 167/196 (85%) Strand = Plus / Minus Query: 266 aggttatgcaggatgtagagggaggccgaggagaggaagatgcagaccgagtagctgagc 325 ||||| ||||||||||| ||||| ||||| || | |||||||||||||| |||||||||| Sbjct: 140112 aggttgtgcaggatgtacagggaagccgacgacaagaagatgcagaccgcgtagctgagc 140053 Query: 326 aggtccagccccgtggtgatcttcaccatcttgctccgctcgaacatcttcaccagcagg 385 ||||||| ||||||||||| | |||||||||||||| |||||||||||||||||| || Sbjct: 140052 aggtccattcccgtggtgatgtgcaccatcttgctcctctcgaacatcttcaccaggaga 139993 Query: 386 atcatcacgatgacgtgcccaaccttggtcttgagctcgtccagggacgtgatcttcatc 445 ||||||||||||| ||| || | ||| || |||||||| || || || |||| ||||| Sbjct: 139992 atcatcacgatgatgtggcccagcttcgttttgagctcatcgagagagctgattctcatc 139933 Query: 446 cacttcggcctctcct 461 ||| |||| ||||||| Sbjct: 139932 cacctcggtctctcct 139917 Score = 91.7 bits (46), Expect = 3e-15 Identities = 64/70 (91%) Strand = Plus / Minus Query: 534 cgttgctgatgaacagcccgtagagacccatcccgaagatcagcatgacggtgccagcaa 593 ||||||||||||||||||| || ||||||||||| || ||||||||||| || ||||||| Sbjct: 139682 cgttgctgatgaacagcccatacagacccatcccaaaaatcagcatgactgttccagcaa 139623 Query: 594 gatacacatc 603 |||||||||| Sbjct: 139622 gatacacatc 139613 Score = 79.8 bits (40), Expect = 1e-11 Identities = 79/92 (85%) Strand = Plus / Minus Query: 608 gcctcgacgaccttgaggaccatctgccctgtatggacacctttggcgcagctcgtccag 667 |||||||||| | ||||||||||||||||||||||||||||| | | ||||| |||||| Sbjct: 139426 gcctcgacgagcctgaggaccatctgccctgtatggacacctctaacacagcttgtccag 139367 Query: 668 tagacacaataggcctcttttatgtacacaca 699 |||||| || || ||||| ||||||||||| Sbjct: 139366 tagacatggtatgcttctttaatgtacacaca 139335 Score = 58.0 bits (29), Expect = 4e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 704 ttgaggaagcagaggagggagcccgccagcgatccggcgacggcgagaa 752 |||||||||||||||||||| || ||||| |||||||| || ||||||| Sbjct: 141700 ttgaggaagcagaggagggatccggccagtgatccggcaaccgcgagaa 141652 Score = 44.1 bits (22), Expect = 0.66 Identities = 22/22 (100%) Strand = Plus / Minus Query: 705 tgaggaagcagaggagggagcc 726 |||||||||||||||||||||| Sbjct: 139236 tgaggaagcagaggagggagcc 139215
>ref|NM_121375.3| Arabidopsis thaliana unknown protein AT5G13720 mRNA, complete cds Length = 1012 Score = 69.9 bits (35), Expect = 1e-08 Identities = 95/115 (82%) Strand = Plus / Minus Query: 350 accatcttgctccgctcgaacatcttcaccagcaggatcatcacgatgacgtgcccaacc 409 ||||||||||| | ||||||||||||||| ||||| ||||| || ||||| || || || Sbjct: 805 accatcttgcttctctcgaacatcttcactagcagaatcataacaatgacatgtcccact 746 Query: 410 ttggtcttgagctcgtccagggacgtgatcttcatccacttcggcctctccttca 464 ||||| || ||||| || || || ||||||||||||| || || |||||||||| Sbjct: 745 ttggttttaagctcatcaagtgagctgatcttcatccattttggtctctccttca 691
>ref|NM_121376.2| Arabidopsis thaliana SIGD (SIGMA-LIKE FACTOR 4); DNA binding / DNA-directed RNA polymerase/ transcription factor AT5G13730 (SIGD) mRNA, complete cds Length = 1785 Score = 69.9 bits (35), Expect = 1e-08 Identities = 95/115 (82%) Strand = Plus / Plus Query: 350 accatcttgctccgctcgaacatcttcaccagcaggatcatcacgatgacgtgcccaacc 409 ||||||||||| | ||||||||||||||| ||||| ||||| || ||||| || || || Sbjct: 1556 accatcttgcttctctcgaacatcttcactagcagaatcataacaatgacatgtcccact 1615 Query: 410 ttggtcttgagctcgtccagggacgtgatcttcatccacttcggcctctccttca 464 ||||| || ||||| || || || ||||||||||||| || || |||||||||| Sbjct: 1616 ttggttttaagctcatcaagtgagctgatcttcatccattttggtctctccttca 1670
>gb|AY150387.1| Arabidopsis thaliana unknown protein (At5g13720) mRNA, complete cds Length = 820 Score = 69.9 bits (35), Expect = 1e-08 Identities = 95/115 (82%) Strand = Plus / Minus Query: 350 accatcttgctccgctcgaacatcttcaccagcaggatcatcacgatgacgtgcccaacc 409 ||||||||||| | ||||||||||||||| ||||| ||||| || ||||| || || || Sbjct: 686 accatcttgcttctctcgaacatcttcactagcagaatcataacaatgacatgtcccact 627 Query: 410 ttggtcttgagctcgtccagggacgtgatcttcatccacttcggcctctccttca 464 ||||| || ||||| || || || ||||||||||||| || || |||||||||| Sbjct: 626 ttggttttaagctcatcaagtgagctgatcttcatccattttggtctctccttca 572
>gb|AY096494.1| Arabidopsis thaliana unknown protein (At5g13720) mRNA, complete cds Length = 974 Score = 69.9 bits (35), Expect = 1e-08 Identities = 95/115 (82%) Strand = Plus / Minus Query: 350 accatcttgctccgctcgaacatcttcaccagcaggatcatcacgatgacgtgcccaacc 409 ||||||||||| | ||||||||||||||| ||||| ||||| || ||||| || || || Sbjct: 805 accatcttgcttctctcgaacatcttcactagcagaatcataacaatgacatgtcccact 746 Query: 410 ttggtcttgagctcgtccagggacgtgatcttcatccacttcggcctctccttca 464 ||||| || ||||| || || || ||||||||||||| || || |||||||||| Sbjct: 745 ttggttttaagctcatcaagtgagctgatcttcatccattttggtctctccttca 691
>dbj|AB021119.1| Arabidopsis thaliana sigD gene for RNA polymerase sigma subunit SigD and spliced variant SigD*, complete cds Length = 2975 Score = 69.9 bits (35), Expect = 1e-08 Identities = 95/115 (82%) Strand = Plus / Plus Query: 350 accatcttgctccgctcgaacatcttcaccagcaggatcatcacgatgacgtgcccaacc 409 ||||||||||| | ||||||||||||||| ||||| ||||| || ||||| || || || Sbjct: 2337 accatcttgcttctctcgaacatcttcactagcagaatcataacaatgacatgtcccact 2396 Query: 410 ttggtcttgagctcgtccagggacgtgatcttcatccacttcggcctctccttca 464 ||||| || ||||| || || || ||||||||||||| || || |||||||||| Sbjct: 2397 ttggttttaagctcatcaagtgagctgatcttcatccattttggtctctccttca 2451
>dbj|AB006704.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSH12 Length = 79259 Score = 69.9 bits (35), Expect = 1e-08 Identities = 95/115 (82%) Strand = Plus / Minus Query: 350 accatcttgctccgctcgaacatcttcaccagcaggatcatcacgatgacgtgcccaacc 409 ||||||||||| | ||||||||||||||| ||||| ||||| || ||||| || || || Sbjct: 72132 accatcttgcttctctcgaacatcttcactagcagaatcataacaatgacatgtcccact 72073 Query: 410 ttggtcttgagctcgtccagggacgtgatcttcatccacttcggcctctccttca 464 ||||| || ||||| || || || ||||||||||||| || || |||||||||| Sbjct: 72072 ttggttttaagctcatcaagtgagctgatcttcatccattttggtctctccttca 72018
>gb|AY110425.1| Zea mays CL28396_2 mRNA sequence Length = 1071 Score = 69.9 bits (35), Expect = 1e-08 Identities = 62/71 (87%) Strand = Plus / Minus Query: 533 gcgttgctgatgaacagcccgtagagacccatcccgaagatcagcatgacggtgccagca 592 |||||||||| ||| || ||||||||||||||||| || |||| |||||| || ||||| Sbjct: 249 gcgttgctgacgaagagaccgtagagacccatcccaaatatcaacatgaccgtttcagca 190 Query: 593 agatacacatc 603 ||||||||||| Sbjct: 189 agatacacatc 179
>gb|AC025905.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0018F16, complete sequence Length = 179157 Score = 46.1 bits (23), Expect = 0.17 Identities = 42/47 (89%), Gaps = 1/47 (2%) Strand = Plus / Minus Query: 536 ttgctgatgaacagcccgtagagacccatcccgaagatcagcatgac 582 ||||||||||||| |||||| | ||||||||| || ||||||||||| Sbjct: 15640 ttgctgatgaacaacccgtacatacccatccc-aaaatcagcatgac 15595
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 46.1 bits (23), Expect = 0.17 Identities = 42/47 (89%), Gaps = 1/47 (2%) Strand = Plus / Minus Query: 536 ttgctgatgaacagcccgtagagacccatcccgaagatcagcatgac 582 ||||||||||||| |||||| | ||||||||| || ||||||||||| Sbjct: 16136751 ttgctgatgaacaacccgtacatacccatccc-aaaatcagcatgac 16136706
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 46.1 bits (23), Expect = 0.17 Identities = 42/47 (89%), Gaps = 1/47 (2%) Strand = Plus / Minus Query: 536 ttgctgatgaacagcccgtagagacccatcccgaagatcagcatgac 582 ||||||||||||| |||||| | ||||||||| || ||||||||||| Sbjct: 16144992 ttgctgatgaacaacccgtacatacccatccc-aaaatcagcatgac 16144947
>emb|CT573502.2| Medicago truncatula chromosome 5 clone mte1-69f21, COMPLETE SEQUENCE Length = 89977 Score = 44.1 bits (22), Expect = 0.66 Identities = 22/22 (100%) Strand = Plus / Plus Query: 2 ttttgtgctatatgaatgtttt 23 |||||||||||||||||||||| Sbjct: 7685 ttttgtgctatatgaatgtttt 7706
>gb|AC133874.10| Mus musculus chromosome 19, clone RP23-81N16, complete sequence Length = 215113 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 283 gagggaggccgaggagaggaagatg 307 |||||||| |||||||||||||||| Sbjct: 178263 gagggaggtcgaggagaggaagatg 178239
>gb|AC126544.5| Homo sapiens chromosome 17, clone RP11-707O23, complete sequence Length = 172940 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 706 gaggaagcagaggagggagcc 726 ||||||||||||||||||||| Sbjct: 91635 gaggaagcagaggagggagcc 91615
>dbj|AK091529.1| Homo sapiens cDNA FLJ34210 fis, clone FCBBF3021026 Length = 2546 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 706 gaggaagcagaggagggagcc 726 ||||||||||||||||||||| Sbjct: 1064 gaggaagcagaggagggagcc 1044
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 732 gcgatccggcgacggcgagaa 752 ||||||||||||||||||||| Sbjct: 3299995 gcgatccggcgacggcgagaa 3300015
>dbj|D21071.2| Rana catesbeiana mRNA for bullfrog skeletal muscle calcium release channel (ryanodine receptor) beta isoform(RyR3), complete cds Length = 16010 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 706 gaggaagcagaggagggagcc 726 ||||||||||||||||||||| Sbjct: 13390 gaggaagcagaggagggagcc 13410
>gb|AC004703.1|AC004703 Homo sapiens chromosome 17, clone hRPC.1164_O_3, complete sequence Length = 104147 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 706 gaggaagcagaggagggagcc 726 ||||||||||||||||||||| Sbjct: 63179 gaggaagcagaggagggagcc 63199 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,869,205 Number of Sequences: 3902068 Number of extensions: 5869205 Number of successful extensions: 118165 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 117881 Number of HSP's gapped (non-prelim): 287 length of query: 752 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 729 effective length of database: 17,143,297,704 effective search space: 12497464026216 effective search space used: 12497464026216 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)
