ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal13c12 |
|---|---|
| Clone Library Name | barley_pub |
>EWS_MOUSE (Q61545) RNA-binding protein EWS| Length = 655 Score = 55.5 bits (132), Expect = 2e-07 Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 1/94 (1%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTD-DSGKAKGDACLA 381 IY+ L +VT+++L + F G V ++ ++ G I IY D ++GK KGDA ++ Sbjct: 362 IYVQGLNDNVTLDDLADFFKQCGVV-KMNKRTGQP-----MIHIYLDKETGKPKGDATVS 415 Query: 380 YEDPSAAHSAGGFYNDYDMRGRKISVVMAEKSAP 279 YEDP A +A +++ D +G K+ V +A K P Sbjct: 416 YEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPP 449
>EWS_HUMAN (Q01844) RNA-binding protein EWS (EWS oncogene) (Ewing sarcoma| breakpoint region 1 protein) Length = 656 Score = 55.1 bits (131), Expect = 2e-07 Identities = 33/94 (35%), Positives = 53/94 (56%), Gaps = 1/94 (1%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTD-DSGKAKGDACLA 381 IY+ L VT+++L + F G V ++ ++ G I IY D ++GK KGDA ++ Sbjct: 363 IYVQGLNDSVTLDDLADFFKQCGVV-KMNKRTGQP-----MIHIYLDKETGKPKGDATVS 416 Query: 380 YEDPSAAHSAGGFYNDYDMRGRKISVVMAEKSAP 279 YEDP A +A +++ D +G K+ V +A K P Sbjct: 417 YEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPP 450
>CAZ_DROME (Q27294) RNA-binding protein cabeza (Sarcoma-associated RNA-binding| fly homolog) (P19) Length = 399 Score = 50.1 bits (118), Expect = 7e-06 Identities = 29/91 (31%), Positives = 52/91 (57%), Gaps = 1/91 (1%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQ-WPWNIKIYTDDSGKAKGDACLA 381 I++S + P T ++++ FG IG + K KR K + W + K ++G +KG+A + Sbjct: 122 IFVSGMDPSTTEQDIETHFGAIGIIK--KDKRTMKPKIWLYKNK----ETGASKGEATVT 175 Query: 380 YEDPSAAHSAGGFYNDYDMRGRKISVVMAEK 288 Y+D +AA SA +++ D G I V +A++ Sbjct: 176 YDDTNAAQSAIEWFDGRDFNGNAIKVSLAQR 206
>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein| 1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A) (PABP 1-A) (xPABP1-A) Length = 633 Score = 47.8 bits (112), Expect = 3e-05 Identities = 29/94 (30%), Positives = 44/94 (46%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLAY 378 +YI N D+ E L+E+FG G ++K+ TDD+GK+KG +++ Sbjct: 193 VYIKNFGDDMNDERLKEMFGKYGPA--------------LSVKVMTDDNGKSKGFGFVSF 238 Query: 377 EDPSAAHSAGGFYNDYDMRGRKISVVMAEKSAPR 276 E A A N DM G+ + V A+K R Sbjct: 239 ERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVER 272
>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 47.0 bits (110), Expect = 6e-05 Identities = 29/94 (30%), Positives = 45/94 (47%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLAY 378 +YI N D+ E L+ELFG G ++K+ TD+SGK+KG +++ Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPA--------------LSVKVMTDESGKSKGFGFVSF 238 Query: 377 EDPSAAHSAGGFYNDYDMRGRKISVVMAEKSAPR 276 E A A N ++ G++I V A+K R Sbjct: 239 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 272
>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 47.0 bits (110), Expect = 6e-05 Identities = 29/94 (30%), Positives = 45/94 (47%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLAY 378 +YI N D+ E L+ELFG G ++K+ TD+SGK+KG +++ Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPA--------------LSVKVMTDESGKSKGFGFVSF 238 Query: 377 EDPSAAHSAGGFYNDYDMRGRKISVVMAEKSAPR 276 E A A N ++ G++I V A+K R Sbjct: 239 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 272
>FUS_BOVIN (Q28009) RNA-binding protein FUS (Pigpen protein)| Length = 512 Score = 46.2 bits (108), Expect = 1e-04 Identities = 29/93 (31%), Positives = 51/93 (54%), Gaps = 1/93 (1%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTD-DSGKAKGDACLA 381 I++ L +VT+E + + F IG + K K P I +YTD ++GK KG+A ++ Sbjct: 273 IFVQGLGENVTIESVADYFKQIGII-----KTNKKTGQPM-INLYTDRETGKLKGEATVS 326 Query: 380 YEDPSAAHSAGGFYNDYDMRGRKISVVMAEKSA 282 ++DP +A +A +++ + G I V A + A Sbjct: 327 FDDPPSAKAAIDWFDGKEFSGNPIKVSFATRRA 359
>FUS_HUMAN (P35637) RNA-binding protein FUS (Oncogene FUS) (Oncogene TLS)| (Translocated in liposarcoma protein) (POMp75) (75 kDa DNA-pairing protein) Length = 526 Score = 46.2 bits (108), Expect = 1e-04 Identities = 29/93 (31%), Positives = 51/93 (54%), Gaps = 1/93 (1%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTD-DSGKAKGDACLA 381 I++ L +VT+E + + F IG + K K P I +YTD ++GK KG+A ++ Sbjct: 287 IFVQGLGENVTIESVADYFKQIGII-----KTNKKTGQPM-INLYTDRETGKLKGEATVS 340 Query: 380 YEDPSAAHSAGGFYNDYDMRGRKISVVMAEKSA 282 ++DP +A +A +++ + G I V A + A Sbjct: 341 FDDPPSAKAAIDWFDGKEFSGNPIKVSFATRRA 373
>FUS_MOUSE (P56959) RNA-binding protein FUS (Pigpen protein)| Length = 518 Score = 46.2 bits (108), Expect = 1e-04 Identities = 29/93 (31%), Positives = 51/93 (54%), Gaps = 1/93 (1%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTD-DSGKAKGDACLA 381 I++ L +VT+E + + F IG + K K P I +YTD ++GK KG+A ++ Sbjct: 280 IFVQGLGENVTIESVADYFKQIGII-----KTNKKTGQPM-INLYTDRETGKLKGEATVS 333 Query: 380 YEDPSAAHSAGGFYNDYDMRGRKISVVMAEKSA 282 ++DP +A +A +++ + G I V A + A Sbjct: 334 FDDPPSAKAAIDWFDGKEFSGNPIKVSFATRRA 366
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 45.8 bits (107), Expect = 1e-04 Identities = 28/94 (29%), Positives = 45/94 (47%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLAY 378 +YI N D+ E L++LFG G ++K+ TD+SGK+KG +++ Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPA--------------LSVKVMTDESGKSKGFGFVSF 238 Query: 377 EDPSAAHSAGGFYNDYDMRGRKISVVMAEKSAPR 276 E A A N ++ G++I V A+K R Sbjct: 239 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 272
>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 45.8 bits (107), Expect = 1e-04 Identities = 28/94 (29%), Positives = 45/94 (47%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLAY 378 +YI N D+ E L++LFG G ++K+ TD+SGK+KG +++ Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPA--------------LSVKVMTDESGKSKGFGFVSF 238 Query: 377 EDPSAAHSAGGFYNDYDMRGRKISVVMAEKSAPR 276 E A A N ++ G++I V A+K R Sbjct: 239 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 272
>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 45.8 bits (107), Expect = 1e-04 Identities = 28/94 (29%), Positives = 45/94 (47%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLAY 378 +YI N D+ E L++LFG G ++K+ TD+SGK+KG +++ Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPA--------------LSVKVMTDESGKSKGFGFVSF 238 Query: 377 EDPSAAHSAGGFYNDYDMRGRKISVVMAEKSAPR 276 E A A N ++ G++I V A+K R Sbjct: 239 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVER 272
>UAP2_SCHPO (O43120) Splicing factor U2AF-associated protein 2| Length = 367 Score = 45.1 bits (105), Expect = 2e-04 Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 3/91 (3%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLAY 378 +YI LP DVTV+E++E+F G + + D IKIY + G KGDA + + Sbjct: 112 VYIQGLPLDVTVDEIEEVFKKCGVIAK------NIDNGTPRIKIYRTEDGTPKGDALIVF 165 Query: 377 EDPSAAHSAGGFYNDYDMR---GRKISVVMA 294 + A ++D + R G+K+ V A Sbjct: 166 FRSESVELAEQLFDDTEFRYGSGQKMRVQKA 196
>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein| 1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B) (PABP 1-B) (xPABP1-B) Length = 633 Score = 43.5 bits (101), Expect = 6e-04 Identities = 28/94 (29%), Positives = 42/94 (44%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLAY 378 +YI N D+ E L+E FG G ++K+ TDD GK++G +++ Sbjct: 193 VYIKNFGEDMDDERLKEWFGQYGAA--------------LSVKVMTDDHGKSRGFGFVSF 238 Query: 377 EDPSAAHSAGGFYNDYDMRGRKISVVMAEKSAPR 276 E A A N D+ G+ I V A+K R Sbjct: 239 ERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVER 272
>RBP56_HUMAN (Q92804) TATA-binding protein-associated factor 2N (RNA-binding| protein 56) (TAFII68) (TAF(II)68) Length = 592 Score = 43.1 bits (100), Expect = 8e-04 Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 1/91 (1%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTD-DSGKAKGDACLA 381 I++ L V+ +++ E F IG + K K P I +YTD D+GK KG+A ++ Sbjct: 236 IFVQGLGEGVSTDQVGEFFKQIGII-----KTNKKTGKPM-INLYTDKDTGKPKGEATVS 289 Query: 380 YEDPSAAHSAGGFYNDYDMRGRKISVVMAEK 288 ++DP +A +A +++ + G I V A + Sbjct: 290 FDDPPSAKAAIDWFDGKEFHGNIIKVSFATR 320
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 653 Score = 41.6 bits (96), Expect = 0.002 Identities = 24/94 (25%), Positives = 43/94 (45%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLAY 378 +YI NL ++T +E +LFG G++ ++ + D + K +G + Y Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEI--------------TSLSLVKDQNDKPRGFGFVNY 308 Query: 377 EDPSAAHSAGGFYNDYDMRGRKISVVMAEKSAPR 276 + A A ND + +G+K+ V A+K R Sbjct: 309 ANHECAQKAVDELNDKEYKGKKLYVGRAQKKHER 342 Score = 38.5 bits (88), Expect = 0.021 Identities = 25/94 (26%), Positives = 41/94 (43%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLAY 378 ++I NL +V E L+ F G + + KI TD+ GK+KG + Y Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTIT--------------SAKIMTDEQGKSKGFGFVCY 411 Query: 377 EDPSAAHSAGGFYNDYDMRGRKISVVMAEKSAPR 276 P A+ A N + G+ + V +A++ R Sbjct: 412 TTPEEANKAVTEMNQRMLAGKPLYVALAQRKEVR 445
>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 634 Score = 40.4 bits (93), Expect = 0.005 Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 1/95 (1%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLAY 378 +Y+ N D E+L+E F G++ + K+ + + GK+KG +A+ Sbjct: 185 VYVKNFTEDFDDEKLKEFFEPYGKIT--------------SYKVMSKEDGKSKGFGFVAF 230 Query: 377 EDPSAAHSAGGFYNDYDM-RGRKISVVMAEKSAPR 276 E AA +A N DM G+ + V A+K A R Sbjct: 231 ETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAER 265
>SGN1_YEAST (P40561) RNA-binding protein SGN1| Length = 250 Score = 40.4 bits (93), Expect = 0.005 Identities = 25/93 (26%), Positives = 45/93 (48%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLAY 378 I++ N+ PDVT E++++ F GQ+ RI +Y ++G KG + + Sbjct: 66 IFVGNITPDVTPEQIEDHFKDCGQIKRI-------------TLLYDRNTGTPKGYGYIEF 112 Query: 377 EDPSAAHSAGGFYNDYDMRGRKISVVMAEKSAP 279 E P+ A N +++G+KI+V + P Sbjct: 113 ESPAYREKALQL-NGGELKGKKIAVSRKRTNIP 144
>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)| (CeSF2/ASF) Length = 258 Score = 40.0 bits (92), Expect = 0.007 Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 1/98 (1%) Frame = -3 Query: 560 RIYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTD-DSGKAKGDACL 384 ++Y+ NLP DV +E++++F + GRIK Y D SG+ A + Sbjct: 10 KVYVGNLPGDVREKEVEDIF---HKYGRIK---------------YVDIKSGRGPAFAFV 51 Query: 383 AYEDPSAAHSAGGFYNDYDMRGRKISVVMAEKSAPRAP 270 +ED A A + Y+ GR+I V PR P Sbjct: 52 EFEDHRDAEDAVRARDGYEFDGRRIRVEFTRGVGPRGP 89
>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein| 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein 1) (APP-1) Length = 644 Score = 40.0 bits (92), Expect = 0.007 Identities = 27/94 (28%), Positives = 43/94 (45%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLAY 378 +YI N +V E L+ELF G+ ++K+ D +GK+KG ++Y Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKT--------------LSVKVMRDPNGKSKGFGFVSY 238 Query: 377 EDPSAAHSAGGFYNDYDMRGRKISVVMAEKSAPR 276 E A+ A N ++ G+ I V A+K R Sbjct: 239 EKHEDANKAVEEMNGKEISGKIIFVGRAQKKVER 272
>YN26_YEAST (P53830) Hypothetical 32.3 kDa protein in SEC21-MRPL10 intergenic| region Length = 285 Score = 39.7 bits (91), Expect = 0.009 Identities = 31/90 (34%), Positives = 42/90 (46%), Gaps = 1/90 (1%) Frame = -3 Query: 557 IYISNLPPDVTVEE-LQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLA 381 IYIS LP D T +E L E F G + R +D P K+Y +D G KGDA + Sbjct: 47 IYISGLPTDKTTKEGLTEQFCKYGMI------RTNRDGEPL-CKLYVNDKGAFKGDALIT 99 Query: 380 YEDPSAAHSAGGFYNDYDMRGRKISVVMAE 291 Y + A N+ G++I V A+ Sbjct: 100 YSKEESVTLAIEMMNESIFLGKQIRVERAQ 129
>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic| poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A) Length = 629 Score = 39.3 bits (90), Expect = 0.012 Identities = 25/94 (26%), Positives = 41/94 (43%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLAY 378 +YI N D+ + L+E+F G ++K+ DDSG+++G + Y Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNT--------------LSVKVMMDDSGRSRGFGFVNY 238 Query: 377 EDPSAAHSAGGFYNDYDMRGRKISVVMAEKSAPR 276 + A A N ++ GR I V A+K R Sbjct: 239 GNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIER 272
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 39.3 bits (90), Expect = 0.012 Identities = 25/95 (26%), Positives = 44/95 (46%) Frame = -3 Query: 560 RIYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLA 381 R+Y+ NLP DV L++LF G+V + +Y ++G+++G + Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEAR-------------VVYDRETGRSRGFGFVT 291 Query: 380 YEDPSAAHSAGGFYNDYDMRGRKISVVMAEKSAPR 276 D + A + ++ GR I V +AE+ PR Sbjct: 292 MSDVDELNEAISALDGQNLEGRAIRVNVAEERPPR 326
>PM14_CAEEL (Q8ITY4) Pre-mRNA branch site p14-like protein| Length = 138 Score = 38.9 bits (89), Expect = 0.016 Identities = 24/86 (27%), Positives = 41/86 (47%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLAY 378 +YI NLP +T EE+ E+FG G V +I+ ++ + +G A + Y Sbjct: 21 LYIKNLPYKITTEEMYEIFGKFGAVRQIR----------------VGNTAETRGTAFVVY 64 Query: 377 EDPSAAHSAGGFYNDYDMRGRKISVV 300 ED A +A + Y++ R + V+ Sbjct: 65 EDIFDAKTACEHLSGYNVSNRYLVVL 90
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 616 Score = 38.5 bits (88), Expect = 0.021 Identities = 22/85 (25%), Positives = 39/85 (45%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLAY 378 +++ N+P + T E+L+++F +G V + +Y ++GK KG Y Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRL-------------VYDRETGKPKGYGFCEY 64 Query: 377 EDPSAAHSAGGFYNDYDMRGRKISV 303 +D A SA N + GR + V Sbjct: 65 QDQETALSAMRNLNGREFSGRALRV 89
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 38.5 bits (88), Expect = 0.021 Identities = 22/85 (25%), Positives = 39/85 (45%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLAY 378 +++ N+P + T E+L+++F +G V + +Y ++GK KG Y Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRL-------------VYDRETGKPKGYGFCEY 64 Query: 377 EDPSAAHSAGGFYNDYDMRGRKISV 303 +D A SA N + GR + V Sbjct: 65 QDQETALSAMRNLNGREFSGRALRV 89
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 38.1 bits (87), Expect = 0.027 Identities = 28/95 (29%), Positives = 41/95 (43%) Frame = -3 Query: 560 RIYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLA 381 R+Y+ NL V L+ LF G+V + IY DSG++KG + Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARV-------------IYDRDSGRSKGFGFVT 251 Query: 380 YEDPSAAHSAGGFYNDYDMRGRKISVVMAEKSAPR 276 Y+ +A + D+ GR+I V AE PR Sbjct: 252 YDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPPR 286 Score = 33.5 bits (75), Expect = 0.67 Identities = 20/86 (23%), Positives = 39/86 (45%) Frame = -3 Query: 560 RIYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLA 381 ++++ NLP +V +L +LF G V ++ IY +G+++G + Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVE-------------VIYDKITGRSRGFGFVT 138 Query: 380 YEDPSAAHSAGGFYNDYDMRGRKISV 303 S +A +N Y++ GR + V Sbjct: 139 MSSVSEVEAAAQQFNGYELDGRPLRV 164
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 38.1 bits (87), Expect = 0.027 Identities = 22/85 (25%), Positives = 39/85 (45%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLAY 378 +++ N+P + T E+L+++F +G V + +Y ++GK KG Y Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRL-------------VYDRETGKPKGYGFCEY 64 Query: 377 EDPSAAHSAGGFYNDYDMRGRKISV 303 +D A SA N + GR + V Sbjct: 65 QDQETALSAMRNLNGREFSGRALRV 89
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 38.1 bits (87), Expect = 0.027 Identities = 22/85 (25%), Positives = 39/85 (45%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLAY 378 +++ N+P + T E+L+++F +G V + +Y ++GK KG Y Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRL-------------VYDRETGKPKGYGFCEY 64 Query: 377 EDPSAAHSAGGFYNDYDMRGRKISV 303 +D A SA N + GR + V Sbjct: 65 QDQETALSAMRNLNGREFSGRALRV 89
>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) Length = 699 Score = 38.1 bits (87), Expect = 0.027 Identities = 25/93 (26%), Positives = 40/93 (43%) Frame = -3 Query: 560 RIYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLA 381 R+++ NLP D+T +E + LF G+ G + +G KG + Sbjct: 290 RLFVGNLPADITEDEFKRLFAKYGEPGEVFINKG-------------------KGFGFIK 330 Query: 380 YEDPSAAHSAGGFYNDYDMRGRKISVVMAEKSA 282 E + A A +D MRGR++ V A +A Sbjct: 331 LESRALAEIAKAELDDTPMRGRQLRVRFATHAA 363
>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)| binding protein) (ePABP) Length = 629 Score = 38.1 bits (87), Expect = 0.027 Identities = 24/94 (25%), Positives = 41/94 (43%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLAY 378 +YI N D+ + L+E+F G ++K+ DD+G+++G + Y Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNT--------------LSVKVMMDDTGRSRGFGFVNY 238 Query: 377 EDPSAAHSAGGFYNDYDMRGRKISVVMAEKSAPR 276 + A A N ++ GR I V A+K R Sbjct: 239 GNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIER 272
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 38.1 bits (87), Expect = 0.027 Identities = 22/85 (25%), Positives = 39/85 (45%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLAY 378 +++ N+P + T E+L+++F +G V + +Y ++GK KG Y Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRL-------------VYDRETGKPKGYGFCEY 64 Query: 377 EDPSAAHSAGGFYNDYDMRGRKISV 303 +D A SA N + GR + V Sbjct: 65 QDQETALSAMRNLNGREFSGRALRV 89
>SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) (100-kDa DNA-pairing protein) (hPOMp Length = 707 Score = 38.1 bits (87), Expect = 0.027 Identities = 25/93 (26%), Positives = 40/93 (43%) Frame = -3 Query: 560 RIYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLA 381 R+++ NLP D+T +E + LF G+ G + +G KG + Sbjct: 298 RLFVGNLPADITEDEFKRLFAKYGEPGEVFINKG-------------------KGFGFIK 338 Query: 380 YEDPSAAHSAGGFYNDYDMRGRKISVVMAEKSA 282 E + A A +D MRGR++ V A +A Sbjct: 339 LESRALAEIAKAELDDTPMRGRQLRVRFATHAA 371
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 38.1 bits (87), Expect = 0.027 Identities = 22/85 (25%), Positives = 39/85 (45%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLAY 378 +++ N+P + T E+L+++F +G V + +Y ++GK KG Y Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRL-------------VYDRETGKPKGYGFCEY 64 Query: 377 EDPSAAHSAGGFYNDYDMRGRKISV 303 +D A SA N + GR + V Sbjct: 65 QDQETALSAMRNLNGREFSGRALRV 89
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor| Length = 315 Score = 37.7 bits (86), Expect = 0.035 Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 2/97 (2%) Frame = -3 Query: 560 RIYISNLPPDVTVEELQELF--GGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDAC 387 ++++ NLP DV E L LF G+ ++ + IY D+ +++G Sbjct: 137 KLFVGNLPYDVDSEGLARLFEQAGVVEIAEV---------------IYNRDTDQSRGFGF 181 Query: 386 LAYEDPSAAHSAGGFYNDYDMRGRKISVVMAEKSAPR 276 + A A YN YD+ GR ++V A + R Sbjct: 182 VTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGER 218
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear| (Poly(A)-binding protein) (PABP) (ARS consensus-binding protein ACBP-67) (Polyadenylate tail-binding protein) Length = 576 Score = 37.7 bits (86), Expect = 0.035 Identities = 26/94 (27%), Positives = 39/94 (41%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLAY 378 +Y+ N+ + T E+ QELF G + + + D GK KG + Y Sbjct: 220 LYVKNINSETTDEQFQELFAKFGPI--------------VSASLEKDADGKLKGFGFVNY 265 Query: 377 EDPSAAHSAGGFYNDYDMRGRKISVVMAEKSAPR 276 E A A ND ++ G K+ V A+K R Sbjct: 266 EKHEDAVKAVEALNDSELNGEKLYVGRAQKKNER 299 Score = 37.4 bits (85), Expect = 0.046 Identities = 25/85 (29%), Positives = 40/85 (47%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLAY 378 I+I NL PD+ + L + F G + + KI TD++GK+KG + + Sbjct: 127 IFIKNLHPDIDNKALYDTFSVFGDI--------------LSSKIATDENGKSKGFGFVHF 172 Query: 377 EDPSAAHSAGGFYNDYDMRGRKISV 303 E+ AA A N + G++I V Sbjct: 173 EEEGAAKEAIDALNGMLLNGQEIYV 197 Score = 30.4 bits (67), Expect = 5.7 Identities = 21/94 (22%), Positives = 40/94 (42%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLAY 378 +++ NL V E+L+E F G + + K+ ++GK+KG + + Sbjct: 323 LFVKNLDDSVDDEKLEEEFAPYGTIT--------------SAKVMRTENGKSKGFGFVCF 368 Query: 377 EDPSAAHSAGGFYNDYDMRGRKISVVMAEKSAPR 276 P A A N + G+ + V +A++ R Sbjct: 369 STPEEATKAITEKNQQIVAGKPLYVAIAQRKDVR 402
>MYEF2_HUMAN (Q9P2K5) Myelin expression factor 2 (MyEF-2) (MST156)| Length = 600 Score = 37.4 bits (85), Expect = 0.046 Identities = 24/86 (27%), Positives = 41/86 (47%) Frame = -3 Query: 560 RIYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLA 381 +I++ NLP D+T ++L+E F G V + K ++GK+KG + Sbjct: 524 QIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKM---------------ENGKSKGCGTVR 568 Query: 380 YEDPSAAHSAGGFYNDYDMRGRKISV 303 ++ P +A A N + GR+I V Sbjct: 569 FDSPESAEKACRIMNGIKISGREIDV 594 Score = 36.6 bits (83), Expect = 0.079 Identities = 23/105 (21%), Positives = 47/105 (44%) Frame = -3 Query: 617 PTTKVKQXXXXXXXXXXXARIYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPW 438 P +K K R++ISN+P D+ + +++L +VG + Sbjct: 82 PYSKDKNSGTGEKKGPNRNRVFISNIPYDMKWQAIKDLMRE--KVGEVTY---------- 129 Query: 437 NIKIYTDDSGKAKGDACLAYEDPSAAHSAGGFYNDYDMRGRKISV 303 ++++ D GK++G + ++D A N YD+ GR +++ Sbjct: 130 -VELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNI 173
>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)| Length = 276 Score = 37.4 bits (85), Expect = 0.046 Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 2/97 (2%) Frame = -3 Query: 560 RIYISNLPPDVTVEELQELF--GGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDAC 387 ++++ NLP D+ E L +LF G+ ++ + IY ++ +++G Sbjct: 98 KLFVGNLPYDIDSEGLAQLFQQAGVVEIAEV---------------IYNRETDRSRGFGF 142 Query: 386 LAYEDPSAAHSAGGFYNDYDMRGRKISVVMAEKSAPR 276 + A A Y+ YD+ GR ++V K+APR Sbjct: 143 VTMSTVEEADKAVELYSQYDLNGRLLTV---NKAAPR 176
>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)| Length = 292 Score = 37.0 bits (84), Expect = 0.061 Identities = 28/95 (29%), Positives = 39/95 (41%) Frame = -3 Query: 560 RIYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLA 381 R+Y+ NL V L+ELF G V K +Y DSG+++G + Sbjct: 209 RVYVGNLSWGVDDLALKELFSEQGNVVDAK-------------VVYDRDSGRSRGFGFVT 255 Query: 380 YEDPSAAHSAGGFYNDYDMRGRKISVVMAEKSAPR 276 Y + A N D+ GR I V AE+ R Sbjct: 256 YSSAKEVNDAIDSLNGIDLDGRSIRVSAAEERPRR 290
>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)| Length = 233 Score = 37.0 bits (84), Expect = 0.061 Identities = 26/95 (27%), Positives = 43/95 (45%) Frame = -3 Query: 560 RIYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLA 381 ++++ NLP DV E+L +F G V + IY ++ +++G + Sbjct: 56 KLFVGNLPYDVDSEKLAGIFDAAGVVEIAEV-------------IYNRETDRSRGFGFVT 102 Query: 380 YEDPSAAHSAGGFYNDYDMRGRKISVVMAEKSAPR 276 A A N YDM GR+++V K+APR Sbjct: 103 MSTVEEAEKAVELLNGYDMDGRQLTV---NKAAPR 134 Score = 35.4 bits (80), Expect = 0.18 Identities = 24/96 (25%), Positives = 44/96 (45%) Frame = -3 Query: 560 RIYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLA 381 R+Y+ NLP DV L++LF + G++ R D+ ++G+++G + Sbjct: 150 RVYVGNLPWDVDTSRLEQLF---SEHGKVVSARVVSDR----------ETGRSRGFGFVT 196 Query: 380 YEDPSAAHSAGGFYNDYDMRGRKISVVMAEKSAPRA 273 S + A + + GR + V +AE+ RA Sbjct: 197 MSSESEVNDAIAALDGQTLDGRAVRVNVAEERPRRA 232
>NONO_RAT (Q5FVM4) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 476 Score = 37.0 bits (84), Expect = 0.061 Identities = 13/29 (44%), Positives = 22/29 (75%) Frame = -3 Query: 560 RIYISNLPPDVTVEELQELFGGIGQVGRI 474 R+++ NLPPD+T EE+++LF G+ G + Sbjct: 80 RLFVGNLPPDITEEEMRKLFEKYGKAGEV 108
>NONO_PONPY (Q5RFL9) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 471 Score = 37.0 bits (84), Expect = 0.061 Identities = 13/29 (44%), Positives = 22/29 (75%) Frame = -3 Query: 560 RIYISNLPPDVTVEELQELFGGIGQVGRI 474 R+++ NLPPD+T EE+++LF G+ G + Sbjct: 75 RLFVGNLPPDITEEEMRKLFEKYGKAGEV 103
>NONO_HUMAN (Q15233) Non-POU domain-containing octamer-binding protein (NonO| protein) (54 kDa nuclear RNA- and DNA-binding protein) (p54(nrb)) (p54nrb) (55 kDa nuclear protein) (NMT55) (DNA-binding p52/p100 complex, 52 kDa subunit) Length = 471 Score = 37.0 bits (84), Expect = 0.061 Identities = 13/29 (44%), Positives = 22/29 (75%) Frame = -3 Query: 560 RIYISNLPPDVTVEELQELFGGIGQVGRI 474 R+++ NLPPD+T EE+++LF G+ G + Sbjct: 75 RLFVGNLPPDITEEEMRKLFEKYGKAGEV 103
>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)| Length = 291 Score = 37.0 bits (84), Expect = 0.061 Identities = 28/95 (29%), Positives = 39/95 (41%) Frame = -3 Query: 560 RIYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLA 381 R+Y+ NL V L+ELF G V K +Y DSG+++G + Sbjct: 208 RVYVGNLSWGVDDLALKELFSEQGNVVDAK-------------VVYDRDSGRSRGFGFVT 254 Query: 380 YEDPSAAHSAGGFYNDYDMRGRKISVVMAEKSAPR 276 Y + A N D+ GR I V AE+ R Sbjct: 255 YSSSKEVNDAIDSLNGVDLDGRSIRVSAAEERPRR 289
>NONO_MOUSE (Q99K48) Non-POU domain-containing octamer-binding protein (NonO| protein) Length = 473 Score = 37.0 bits (84), Expect = 0.061 Identities = 13/29 (44%), Positives = 22/29 (75%) Frame = -3 Query: 560 RIYISNLPPDVTVEELQELFGGIGQVGRI 474 R+++ NLPPD+T EE+++LF G+ G + Sbjct: 77 RLFVGNLPPDITEEEMRKLFEKYGKAGEV 105
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 36.6 bits (83), Expect = 0.079 Identities = 22/94 (23%), Positives = 42/94 (44%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLAY 378 +Y+ NL P ++ E+L+E+F G V + K+ D +G +KG +A+ Sbjct: 320 LYVKNLDPSISDEKLKEIFSPFGTV--------------TSSKVMRDPNGTSKGSGFVAF 365 Query: 377 EDPSAAHSAGGFYNDYDMRGRKISVVMAEKSAPR 276 P A A + + + + V +A++ R Sbjct: 366 ATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDR 399
>PES4_YEAST (P39684) Protein PES4 (DNA polymerase epsilon suppressor 4)| Length = 611 Score = 36.6 bits (83), Expect = 0.079 Identities = 24/95 (25%), Positives = 41/95 (43%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLAY 378 I+I NLP T +++ F +G + I K ++ W A + Y Sbjct: 305 IFIKNLPTITTRDDILNFFSEVGPIKSIYLSNATKVKYLW---------------AFVTY 349 Query: 377 EDPSAAHSAGGFYNDYDMRGRKISVVMAEKSAPRA 273 ++ S + A YN++ RG+K+ V A+ RA Sbjct: 350 KNSSDSEKAIKRYNNFYFRGKKLLVTRAQDKEERA 384
>MYEF2_MOUSE (Q8C854) Myelin expression factor 2 (MyEF-2) (MEF-2)| Length = 591 Score = 36.6 bits (83), Expect = 0.079 Identities = 23/105 (21%), Positives = 47/105 (44%) Frame = -3 Query: 617 PTTKVKQXXXXXXXXXXXARIYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPW 438 P +K K R++ISN+P D+ + +++L +VG + Sbjct: 73 PYSKDKNSGTGEKKGPNRNRVFISNIPYDMKWQAIKDLMRE--KVGEVTY---------- 120 Query: 437 NIKIYTDDSGKAKGDACLAYEDPSAAHSAGGFYNDYDMRGRKISV 303 ++++ D GK++G + ++D A N YD+ GR +++ Sbjct: 121 -VELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNI 164 Score = 35.4 bits (80), Expect = 0.18 Identities = 24/86 (27%), Positives = 40/86 (46%) Frame = -3 Query: 560 RIYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLA 381 +I++ NLP D+T ++L+E F G V + K ++GK+KG + Sbjct: 515 QIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKM---------------ENGKSKGCGTVR 559 Query: 380 YEDPSAAHSAGGFYNDYDMRGRKISV 303 +E +A A N + GR+I V Sbjct: 560 FESAESAEKACRIMNGIKISGREIDV 585
>RSD1_SCHPO (O13845) RNA-binding protein rsd1| Length = 604 Score = 36.6 bits (83), Expect = 0.079 Identities = 23/99 (23%), Positives = 45/99 (45%) Frame = -3 Query: 560 RIYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLA 381 R+ +SN+ ++T E+++ +F G + + +R DD ++KG + Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQR--------------DDQNRSKGFGYIQ 386 Query: 380 YEDPSAAHSAGGFYNDYDMRGRKISVVMAEKSAPRAPTS 264 Y +P +A +A N +D+ GR + V + TS Sbjct: 387 YRNPISARNALEKMNGFDLAGRNMRVCLGNDKFTTETTS 425
>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein cp29) Length = 342 Score = 36.2 bits (82), Expect = 0.10 Identities = 28/95 (29%), Positives = 38/95 (40%) Frame = -3 Query: 560 RIYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLA 381 R+Y+ NL V L+ LF G+V + IY DSG++KG + Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARV-------------IYDRDSGRSKGFGFVT 304 Query: 380 YEDPSAAHSAGGFYNDYDMRGRKISVVMAEKSAPR 276 A N D+ GR+I V AE PR Sbjct: 305 LSSSQEVQKAINSLNGADLDGRQIRVSEAEARPPR 339
>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic| poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B) Length = 629 Score = 36.2 bits (82), Expect = 0.10 Identities = 23/94 (24%), Positives = 41/94 (43%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLAY 378 +YI N D+ + L+E+F G ++K+ D+SG+++G + Y Sbjct: 193 VYIKNFGEDMDDKRLKEIFSAFGNT--------------LSVKVMMDNSGRSRGFGFVNY 238 Query: 377 EDPSAAHSAGGFYNDYDMRGRKISVVMAEKSAPR 276 + A A N ++ GR + V A+K R Sbjct: 239 GNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIER 272
>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660| (Poly(A)-binding protein At2g36660) (PABP) Length = 609 Score = 36.2 bits (82), Expect = 0.10 Identities = 24/94 (25%), Positives = 41/94 (43%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLAY 378 IY+ N+ VT EEL++ F G + + K+ D+ GK+KG + + Sbjct: 306 IYVKNVNVAVTEEELRKHFSQCGTI--------------TSTKLMCDEKGKSKGFGFVCF 351 Query: 377 EDPSAAHSAGGFYNDYDMRGRKISVVMAEKSAPR 276 P A A ++ G+ + V +A+K R Sbjct: 352 STPEEAIDAVKTFHGQMFHGKPLYVAIAQKKEDR 385 Score = 34.3 bits (77), Expect = 0.39 Identities = 24/94 (25%), Positives = 41/94 (43%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLAY 378 +++ NLP VT LQ++F G + + K+ T + GK++G + + Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIV--------------SCKVATLEDGKSRGYGFVQF 159 Query: 377 EDPSAAHSAGGFYNDYDMRGRKISVVMAEKSAPR 276 E AAH+A N + ++I V K R Sbjct: 160 EQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDR 193
>HNRPM_HUMAN (P52272) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 729 Score = 35.8 bits (81), Expect = 0.13 Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 3/89 (3%) Frame = -3 Query: 560 RIYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTD---DSGKAKGDA 390 +I++ NLP D T + L++ F G V +Y D ++GK+KG Sbjct: 653 QIFVRNLPFDFTWKMLKDKFNECGHV------------------LYADIKMENGKSKGCG 694 Query: 389 CLAYEDPSAAHSAGGFYNDYDMRGRKISV 303 + +E P A A N + GR+I V Sbjct: 695 VVKFESPEVAERACRMMNGMKLSGREIDV 723
>MK67I_XENLA (Q7SYS2) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| Length = 278 Score = 35.8 bits (81), Expect = 0.13 Identities = 29/96 (30%), Positives = 39/96 (40%), Gaps = 2/96 (2%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLAY 378 IYI ++P + +LQE F G V R++ R K +G +KG A + Y Sbjct: 43 IYIGHIPKSLIEPQLQEYFNQFGTVTRLRLSRSKK-------------TGNSKGYAYVEY 89 Query: 377 EDPSAAHSAGGFYNDYDMRGR--KISVVMAEKSAPR 276 E A N+Y R K V EK PR Sbjct: 90 ECDEVAKIVADTMNNYLFCERLLKCEFVTPEKVHPR 125
>HNRPM_MOUSE (Q9D0E1) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 728 Score = 35.8 bits (81), Expect = 0.13 Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 3/89 (3%) Frame = -3 Query: 560 RIYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTD---DSGKAKGDA 390 +I++ NLP D T + L++ F G V +Y D ++GK+KG Sbjct: 652 QIFVRNLPFDFTWKMLKDKFNECGHV------------------LYADIKMENGKSKGCG 693 Query: 389 CLAYEDPSAAHSAGGFYNDYDMRGRKISV 303 + +E P A A N + GR+I V Sbjct: 694 VVKFESPEVAERACRMMNGMKLSGREIDV 722
>HNRPM_RAT (Q62826) Heterogeneous nuclear ribonucleoprotein M (hnRNP M) (M4| protein) Length = 689 Score = 35.8 bits (81), Expect = 0.13 Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 3/89 (3%) Frame = -3 Query: 560 RIYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTD---DSGKAKGDA 390 +I++ NLP D T + L++ F G V +Y D ++GK+KG Sbjct: 613 QIFVRNLPFDFTWKMLKDKFNECGHV------------------LYADIKMENGKSKGCG 654 Query: 389 CLAYEDPSAAHSAGGFYNDYDMRGRKISV 303 + +E P A A N + GR+I V Sbjct: 655 VVKFESPEVAERACRMMNGMKLSGREIDV 683
>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 35.4 bits (80), Expect = 0.18 Identities = 25/94 (26%), Positives = 42/94 (44%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLAY 378 +++ N+ D+ E+L+ELF G ++K+ D SGK+KG + Y Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTE--------------SVKVIRDASGKSKGFGFVRY 246 Query: 377 EDPSAAHSAGGFYNDYDMRGRKISVVMAEKSAPR 276 E AA A + + G+ + V A+K R Sbjct: 247 ETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIER 280
>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 35.4 bits (80), Expect = 0.18 Identities = 25/94 (26%), Positives = 42/94 (44%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLAY 378 +++ N+ D+ E+L+ELF G ++K+ D SGK+KG + Y Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTE--------------SVKVIRDASGKSKGFGFVRY 246 Query: 377 EDPSAAHSAGGFYNDYDMRGRKISVVMAEKSAPR 276 E AA A + + G+ + V A+K R Sbjct: 247 ETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIER 280
>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 35.4 bits (80), Expect = 0.18 Identities = 25/94 (26%), Positives = 42/94 (44%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLAY 378 +++ N+ D+ E+L+ELF G ++K+ D SGK+KG + Y Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTE--------------SVKVIRDASGKSKGFGFVRY 246 Query: 377 EDPSAAHSAGGFYNDYDMRGRKISVVMAEKSAPR 276 E AA A + + G+ + V A+K R Sbjct: 247 ETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIER 280
>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 35.4 bits (80), Expect = 0.18 Identities = 25/94 (26%), Positives = 42/94 (44%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLAY 378 +++ N+ D+ E+L+ELF G ++K+ D SGK+KG + Y Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTE--------------SVKVIRDASGKSKGFGFVRY 246 Query: 377 EDPSAAHSAGGFYNDYDMRGRKISVVMAEKSAPR 276 E AA A + + G+ + V A+K R Sbjct: 247 ETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIER 280
>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 35.4 bits (80), Expect = 0.18 Identities = 25/94 (26%), Positives = 42/94 (44%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLAY 378 +++ N+ D+ E+L+ELF G ++K+ D SGK+KG + Y Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTE--------------SVKVIRDASGKSKGFGFVRY 246 Query: 377 EDPSAAHSAGGFYNDYDMRGRKISVVMAEKSAPR 276 E AA A + + G+ + V A+K R Sbjct: 247 ETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIER 280
>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 35.4 bits (80), Expect = 0.18 Identities = 25/94 (26%), Positives = 42/94 (44%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLAY 378 +++ N+ D+ E+L+ELF G ++K+ D SGK+KG + Y Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTE--------------SVKVIRDASGKSKGFGFVRY 246 Query: 377 EDPSAAHSAGGFYNDYDMRGRKISVVMAEKSAPR 276 E AA A + + G+ + V A+K R Sbjct: 247 ETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIER 280
>NONA_DROLR (Q9GRX4) Protein no-on-transient A| Length = 698 Score = 35.0 bits (79), Expect = 0.23 Identities = 14/29 (48%), Positives = 21/29 (72%) Frame = -3 Query: 560 RIYISNLPPDVTVEELQELFGGIGQVGRI 474 R+Y+ NL D+T EEL+E+F G++G I Sbjct: 282 RLYVGNLTNDITDEELREMFKPYGEIGEI 310
>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Mel-N1) Length = 360 Score = 35.0 bits (79), Expect = 0.23 Identities = 27/92 (29%), Positives = 43/92 (46%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLAY 378 + ++ LP ++T EEL+ LFG IG++ K R KI +G++ G + Y Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRD---------KI----TGQSLGYGFVNY 87 Query: 377 EDPSAAHSAGGFYNDYDMRGRKISVVMAEKSA 282 DP A A N ++ + I V A S+ Sbjct: 88 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSS 119
>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2| Length = 359 Score = 35.0 bits (79), Expect = 0.23 Identities = 27/92 (29%), Positives = 43/92 (46%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLAY 378 + ++ LP ++T EEL+ LFG IG++ K R KI +G++ G + Y Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRD---------KI----TGQSLGYGFVNY 87 Query: 377 EDPSAAHSAGGFYNDYDMRGRKISVVMAEKSA 282 DP A A N ++ + I V A S+ Sbjct: 88 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSS 119
>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Hel-N1) Length = 359 Score = 35.0 bits (79), Expect = 0.23 Identities = 27/92 (29%), Positives = 43/92 (46%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLAY 378 + ++ LP ++T EEL+ LFG IG++ K R KI +G++ G + Y Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRD---------KI----TGQSLGYGFVNY 87 Query: 377 EDPSAAHSAGGFYNDYDMRGRKISVVMAEKSA 282 DP A A N ++ + I V A S+ Sbjct: 88 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSS 119
>NONA_DROVI (Q9GRW7) Protein no-on-transient A| Length = 697 Score = 35.0 bits (79), Expect = 0.23 Identities = 14/29 (48%), Positives = 21/29 (72%) Frame = -3 Query: 560 RIYISNLPPDVTVEELQELFGGIGQVGRI 474 R+Y+ NL D+T EEL+E+F G++G I Sbjct: 286 RLYVGNLTNDITDEELREMFKPYGEIGEI 314
>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1| Length = 838 Score = 34.7 bits (78), Expect = 0.30 Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 1/70 (1%) Frame = -3 Query: 473 KQKRGYKDQWPWNIKIYTDDSGKAKGDACLAYEDPSAAHSAGGFYNDYDMRGRKISVVMA 294 +Q RG +DQ ++KI D SG ++ A + Y A A ++N + +I V MA Sbjct: 28 QQGRGSEDQIT-DVKIVKDKSGNSRRFAFIGYRSEQDAFDAIEYFNGSFIDTARIEVAMA 86 Query: 293 EKSA-PRAPT 267 + A PR PT Sbjct: 87 KSFADPRVPT 96 Score = 29.6 bits (65), Expect = 9.7 Identities = 21/93 (22%), Positives = 42/93 (45%) Frame = -3 Query: 560 RIYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLA 381 +I + NLP + T +++ ELF GQ+ ++ + + A+G A + Sbjct: 713 KIIVKNLPFEATRKDVFELFSSFGQLKSVRVPKKF--------------DKSARGFAFVE 758 Query: 380 YEDPSAAHSAGGFYNDYDMRGRKISVVMAEKSA 282 + PS A +A + GR++ + AE+ + Sbjct: 759 FLLPSEAENAMDQLQGVHLLGRRLVMQYAEQES 791 Score = 29.6 bits (65), Expect = 9.7 Identities = 20/90 (22%), Positives = 46/90 (51%) Frame = -3 Query: 560 RIYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLA 381 R+++ N+ D T E+ ++LF G++ + ++ + T +G++KG A + Sbjct: 302 RLFLRNILYDATEEDFKQLFSPYGELEEV------------HVAVDTR-TGQSKGFAYVL 348 Query: 380 YEDPSAAHSAGGFYNDYDMRGRKISVVMAE 291 ++DP A +A + +GR + ++ A+ Sbjct: 349 FKDPEHAANAYIELDKQIFQGRLLHILPAD 378
>HRP65_CHITE (Q9U1N0) Hrp65 protein (Ct-Hrp65)| Length = 535 Score = 34.3 bits (77), Expect = 0.39 Identities = 15/26 (57%), Positives = 19/26 (73%) Frame = -3 Query: 560 RIYISNLPPDVTVEELQELFGGIGQV 483 R+YI NL DVT EEL+ELF G++ Sbjct: 114 RLYIGNLTSDVTEEELKELFSPYGEI 139
>SFRS1_XENTR (Q6DII2) Splicing factor, arginine/serine-rich 1| Length = 267 Score = 34.3 bits (77), Expect = 0.39 Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 2/88 (2%) Frame = -3 Query: 560 RIYISNLPPDVTVEELQELFGGIGQVGRI--KQKRGYKDQWPWNIKIYTDDSGKAKGDAC 387 RIY+ NLPPD+ ++++++F G + I K +RG A Sbjct: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRG------------------GPPFAF 58 Query: 386 LAYEDPSAAHSAGGFYNDYDMRGRKISV 303 + +EDP A A + YD G ++ V Sbjct: 59 VEFEDPRDAEDAVYGRDGYDYDGYRLRV 86
>SF1L1_BRARE (Q7SXP4) Splicing factor, arginine/serine-rich 1-like protein 1| Length = 245 Score = 34.3 bits (77), Expect = 0.39 Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 2/88 (2%) Frame = -3 Query: 560 RIYISNLPPDVTVEELQELFGGIGQVGRI--KQKRGYKDQWPWNIKIYTDDSGKAKGDAC 387 RIY+ NLPPD+ ++++++F G + I K +RG A Sbjct: 16 RIYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRG------------------GPPFAF 57 Query: 386 LAYEDPSAAHSAGGFYNDYDMRGRKISV 303 + +EDP A A + YD G ++ V Sbjct: 58 VEFEDPRDAEDAVYARDGYDYDGYRLRV 85
>SFRS1_PONPY (Q5R7H2) Splicing factor, arginine/serine-rich 1| Length = 247 Score = 34.3 bits (77), Expect = 0.39 Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 2/88 (2%) Frame = -3 Query: 560 RIYISNLPPDVTVEELQELFGGIGQVGRI--KQKRGYKDQWPWNIKIYTDDSGKAKGDAC 387 RIY+ NLPPD+ ++++++F G + I K +RG A Sbjct: 16 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRG------------------GPPFAF 57 Query: 386 LAYEDPSAAHSAGGFYNDYDMRGRKISV 303 + +EDP A A + YD G ++ V Sbjct: 58 VEFEDPRDAEDAVYGRDGYDYDGYRLRV 85
>SFRS1_MOUSE (Q6PDM2) Splicing factor, arginine/serine-rich 1| Length = 247 Score = 34.3 bits (77), Expect = 0.39 Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 2/88 (2%) Frame = -3 Query: 560 RIYISNLPPDVTVEELQELFGGIGQVGRI--KQKRGYKDQWPWNIKIYTDDSGKAKGDAC 387 RIY+ NLPPD+ ++++++F G + I K +RG A Sbjct: 16 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRG------------------GPPFAF 57 Query: 386 LAYEDPSAAHSAGGFYNDYDMRGRKISV 303 + +EDP A A + YD G ++ V Sbjct: 58 VEFEDPRDAEDAVYGRDGYDYDGYRLRV 85
>SFRS1_HUMAN (Q07955) Splicing factor, arginine/serine-rich 1 (pre-mRNA-splicing| factor SF2, P33 subunit) (Alternative splicing factor ASF-1) Length = 247 Score = 34.3 bits (77), Expect = 0.39 Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 2/88 (2%) Frame = -3 Query: 560 RIYISNLPPDVTVEELQELFGGIGQVGRI--KQKRGYKDQWPWNIKIYTDDSGKAKGDAC 387 RIY+ NLPPD+ ++++++F G + I K +RG A Sbjct: 16 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRG------------------GPPFAF 57 Query: 386 LAYEDPSAAHSAGGFYNDYDMRGRKISV 303 + +EDP A A + YD G ++ V Sbjct: 58 VEFEDPRDAEDAVYGRDGYDYDGYRLRV 85
>SFRS1_CHICK (Q5ZML3) Splicing factor, arginine/serine-rich 1| Length = 256 Score = 34.3 bits (77), Expect = 0.39 Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 2/88 (2%) Frame = -3 Query: 560 RIYISNLPPDVTVEELQELFGGIGQVGRI--KQKRGYKDQWPWNIKIYTDDSGKAKGDAC 387 RIY+ NLPPD+ ++++++F G + I K +RG A Sbjct: 16 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRG------------------GPPFAF 57 Query: 386 LAYEDPSAAHSAGGFYNDYDMRGRKISV 303 + +EDP A A + YD G ++ V Sbjct: 58 VEFEDPRDAEDAVYGRDGYDYDGYRLRV 85
>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1| Length = 887 Score = 33.9 bits (76), Expect = 0.51 Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 7/104 (6%) Frame = -3 Query: 560 RIYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYK------DQWPWNIKIYTDDSGKAK 399 RI + LP +T + L+E F R++QK ++ ++KI D +G+++ Sbjct: 3 RIIVKGLPVYLTDDNLREHF-----TKRLRQKHSHQAVNGSGPDLITDVKILRDRNGESR 57 Query: 398 GDACLAYEDPSAAHSAGGFYNDYDMRGRKISVVMAEKSA-PRAP 270 + Y + A A ++N + KI V MA+ A PR P Sbjct: 58 RFGFIGYRNEEDAFDAVEYFNGSFINTSKIEVSMAKSFADPRVP 101 Score = 29.6 bits (65), Expect = 9.7 Identities = 21/93 (22%), Positives = 42/93 (45%) Frame = -3 Query: 560 RIYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLA 381 +I + NLP + T +++ ELF GQ+ ++ + + A+G A + Sbjct: 764 KIIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKF--------------DKSARGFAFVE 809 Query: 380 YEDPSAAHSAGGFYNDYDMRGRKISVVMAEKSA 282 + P A +A + + GR++ + AE+ A Sbjct: 810 FLLPKEAENAMDQLHGVHLLGRRLVMQYAEEDA 842
>SART3_MOUSE (Q9JLI8) Squamous cell carcinoma antigen recognized by T-cells 3| (SART-3) (mSART-3) (Tumor-rejection antigen SART3) Length = 962 Score = 33.9 bits (76), Expect = 0.51 Identities = 27/97 (27%), Positives = 45/97 (46%) Frame = -3 Query: 560 RIYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLA 381 +++IS LP T EEL+++ G V KD +++ T+ +GK KG A + Sbjct: 802 KLFISGLPFSCTKEELEDICKAHGTV---------KD-----LRLVTNRAGKPKGLAYVE 847 Query: 380 YEDPSAAHSAGGFYNDYDMRGRKISVVMAEKSAPRAP 270 YE+ S A A + +R I V ++ + P Sbjct: 848 YENESQASQAVMKMDGMTIRENVIKVAISNPPQRKVP 884
>SFRS1_BRARE (Q6NYA0) Splicing factor, arginine/serine-rich 1| Length = 245 Score = 33.9 bits (76), Expect = 0.51 Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 2/88 (2%) Frame = -3 Query: 560 RIYISNLPPDVTVEELQELFGGIGQVGRI--KQKRGYKDQWPWNIKIYTDDSGKAKGDAC 387 RIY+ NLPPD+ ++++++F G + I K +RG A Sbjct: 16 RIYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRG------------------GPPFAF 57 Query: 386 LAYEDPSAAHSAGGFYNDYDMRGRKISV 303 + +EDP A A + YD G ++ V Sbjct: 58 VEFEDPRDAEDAVYGRDGYDYDGYRLRV 85
>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)| Length = 359 Score = 33.9 bits (76), Expect = 0.51 Identities = 27/87 (31%), Positives = 40/87 (45%) Frame = -3 Query: 542 LPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLAYEDPSA 363 LP ++T EEL+ LFG IG++ K R KI +G++ G + Y DP Sbjct: 46 LPQNMTQEELKSLFGSIGEIESCKLVRD---------KI----TGQSLGYGFVNYIDPKD 92 Query: 362 AHSAGGFYNDYDMRGRKISVVMAEKSA 282 A A N ++ + I V A S+ Sbjct: 93 AEKAINTLNGLRLQTKTIKVSYARPSS 119
>SART3_PONPY (Q5REG1) Squamous cell carcinoma antigen recognized by T-cells 3| (SART-3) Length = 981 Score = 33.9 bits (76), Expect = 0.51 Identities = 27/97 (27%), Positives = 45/97 (46%) Frame = -3 Query: 560 RIYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLA 381 +++IS LP T EEL+E+ G V KD +++ T+ +GK KG A + Sbjct: 820 KLFISGLPFSCTKEELEEICKAHGTV---------KD-----LRLVTNRAGKPKGLAYVE 865 Query: 380 YEDPSAAHSAGGFYNDYDMRGRKISVVMAEKSAPRAP 270 YE+ S A A + ++ I V ++ + P Sbjct: 866 YENESQASQAVMKMDGMTIKENVIKVAISNPPQRKVP 902
>PM14_MOUSE (P59708) Pre-mRNA branch site protein p14 (SF3B 14 kDa subunit)| Length = 125 Score = 33.9 bits (76), Expect = 0.51 Identities = 21/86 (24%), Positives = 41/86 (47%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLAY 378 +YI NLP +T EE+ ++FG G + +I+ ++ + +G A + Y Sbjct: 21 LYIRNLPYKITAEEMYDIFGKYGPIRQIR----------------VGNTPETRGTAYVVY 64 Query: 377 EDPSAAHSAGGFYNDYDMRGRKISVV 300 ED A +A + +++ R + V+ Sbjct: 65 EDIFDAKNACDHLSGFNVCNRYLVVL 90
>PM14_HUMAN (Q9Y3B4) Pre-mRNA branch site protein p14 (SF3B 14 kDa subunit)| Length = 125 Score = 33.9 bits (76), Expect = 0.51 Identities = 21/86 (24%), Positives = 41/86 (47%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLAY 378 +YI NLP +T EE+ ++FG G + +I+ ++ + +G A + Y Sbjct: 21 LYIRNLPYKITAEEMYDIFGKYGPIRQIR----------------VGNTPETRGTAYVVY 64 Query: 377 EDPSAAHSAGGFYNDYDMRGRKISVV 300 ED A +A + +++ R + V+ Sbjct: 65 EDIFDAKNACDHLSGFNVCNRYLVVL 90
>SART3_HUMAN (Q15020) Squamous cell carcinoma antigen recognized by T-cells 3| (SART-3) (hSART-3) (Tat-interacting protein of 110 kDa) (Tip110) Length = 963 Score = 33.5 bits (75), Expect = 0.67 Identities = 24/70 (34%), Positives = 36/70 (51%) Frame = -3 Query: 560 RIYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLA 381 +++IS LP T EEL+E+ G V KD +++ T+ +GK KG A + Sbjct: 802 KLFISGLPFSCTKEELEEICKAHGTV---------KD-----LRLVTNRAGKPKGLAYVE 847 Query: 380 YEDPSAAHSA 351 YE+ S A A Sbjct: 848 YENESQASQA 857
>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 373 Score = 33.5 bits (75), Expect = 0.67 Identities = 26/92 (28%), Positives = 42/92 (45%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLAY 378 + ++ LP ++T EE + LFG IG++ K R KI +G++ G + Y Sbjct: 41 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRD---------KI----TGQSLGYGFVNY 87 Query: 377 EDPSAAHSAGGFYNDYDMRGRKISVVMAEKSA 282 DP A A N ++ + I V A S+ Sbjct: 88 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSS 119
>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 385 Score = 33.5 bits (75), Expect = 0.67 Identities = 26/92 (28%), Positives = 42/92 (45%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLAY 378 + ++ LP ++T EE + LFG IG++ K R KI +G++ G + Y Sbjct: 53 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRD---------KI----TGQSLGYGFVNY 99 Query: 377 EDPSAAHSAGGFYNDYDMRGRKISVVMAEKSA 282 DP A A N ++ + I V A S+ Sbjct: 100 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSS 131
>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 380 Score = 33.5 bits (75), Expect = 0.67 Identities = 26/92 (28%), Positives = 42/92 (45%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLAY 378 + ++ LP ++T EE + LFG IG++ K R KI +G++ G + Y Sbjct: 48 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRD---------KI----TGQSLGYGFVNY 94 Query: 377 EDPSAAHSAGGFYNDYDMRGRKISVVMAEKSA 282 DP A A N ++ + I V A S+ Sbjct: 95 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSS 126
>PM14_ARATH (Q9FMP4) Pre-mRNA branch site p14-like protein| Length = 124 Score = 33.5 bits (75), Expect = 0.67 Identities = 25/86 (29%), Positives = 44/86 (51%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLAY 378 +Y+ NLP ++T EE+ ++F G+ G I+Q I+I D + KG A + Y Sbjct: 21 LYVRNLPFNITSEEMYDIF---GKYGAIRQ-----------IRIGCDKA--TKGTAFVVY 64 Query: 377 EDPSAAHSAGGFYNDYDMRGRKISVV 300 ED A +A + +++ R + V+ Sbjct: 65 EDIYDAKNAVDHLSGFNVANRYLIVL 90
>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 668 Score = 33.1 bits (74), Expect = 0.87 Identities = 22/94 (23%), Positives = 40/94 (42%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLAY 378 +Y+ NLP ++T +EL++ FG G + + + D SG ++ + + Sbjct: 227 VYVKNLPKEITDDELKKTFGKYGDIS--------------SAVVMKDQSGNSRSFGFVNF 272 Query: 377 EDPSAAHSAGGFYNDYDMRGRKISVVMAEKSAPR 276 P AA A N + + V A+K + R Sbjct: 273 VSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDR 306
>SFRS9_MOUSE (Q9D0B0) Splicing factor, arginine/serine-rich 9| Length = 222 Score = 32.7 bits (73), Expect = 1.1 Identities = 14/32 (43%), Positives = 22/32 (68%) Frame = -3 Query: 560 RIYISNLPPDVTVEELQELFGGIGQVGRIKQK 465 RIY+ NLP DV ++L++LF G++ I+ K Sbjct: 16 RIYVGNLPSDVREKDLEDLFYKYGRIREIELK 47
>SFRS9_RAT (Q5PPI1) Splicing factor, arginine/serine-rich 9| Length = 221 Score = 32.7 bits (73), Expect = 1.1 Identities = 14/32 (43%), Positives = 22/32 (68%) Frame = -3 Query: 560 RIYISNLPPDVTVEELQELFGGIGQVGRIKQK 465 RIY+ NLP DV ++L++LF G++ I+ K Sbjct: 15 RIYVGNLPTDVREKDLEDLFYKYGRIREIELK 46
>SFRS9_HUMAN (Q13242) Splicing factor, arginine/serine-rich 9 (Pre-mRNA-splicing| factor SRp30C) Length = 221 Score = 32.7 bits (73), Expect = 1.1 Identities = 14/32 (43%), Positives = 22/32 (68%) Frame = -3 Query: 560 RIYISNLPPDVTVEELQELFGGIGQVGRIKQK 465 RIY+ NLP DV ++L++LF G++ I+ K Sbjct: 15 RIYVGNLPTDVREKDLEDLFYKYGRIREIELK 46
>PABP2_HUMAN (Q86U42) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 305 Score = 32.7 bits (73), Expect = 1.1 Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 1/99 (1%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDD-SGKAKGDACLA 381 IY+ N+ T EEL+ F G G V R + I D SG KG A + Sbjct: 173 IYVGNVDYGATAEELEAHFHGCGSVNR--------------VTILCDKFSGHPKGFAYIE 218 Query: 380 YEDPSAAHSAGGFYNDYDMRGRKISVVMAEKSAPRAPTS 264 + D + ++ ++ RGR+I V+ + P T+ Sbjct: 219 FSDKESVRTSLAL-DESLFRGRQIKVIPKRTNRPGISTT 256
>PABP2_BOVIN (Q28165) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA-binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 305 Score = 32.7 bits (73), Expect = 1.1 Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 1/99 (1%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDD-SGKAKGDACLA 381 IY+ N+ T EEL+ F G G V R + I D SG KG A + Sbjct: 173 IYVGNVDYGATAEELEAHFHGCGSVNR--------------VTILCDKFSGHPKGFAYIE 218 Query: 380 YEDPSAAHSAGGFYNDYDMRGRKISVVMAEKSAPRAPTS 264 + D + ++ ++ RGR+I V+ + P T+ Sbjct: 219 FSDKESVRTSLAL-DESLFRGRQIKVIPKRTNRPGISTT 256
>SXL_CHRRU (O97018) Sex-lethal homolog| Length = 307 Score = 32.7 bits (73), Expect = 1.1 Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 2/92 (2%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLAY 378 +Y++NLP +T +EL+++F G+ G I QK +D+ +GK +G A + + Sbjct: 173 LYVTNLPRTITDDELEKIF---GKYGNIVQKNILRDKL----------TGKPRGVAFVRF 219 Query: 377 EDPSAAHSAGGFYNDYDMRG--RKISVVMAEK 288 A A N+ G + ++V +AE+ Sbjct: 220 NKREEAQEAISALNNVIPEGASQPLTVRLAEE 251
>RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15| Length = 296 Score = 32.7 bits (73), Expect = 1.1 Identities = 19/81 (23%), Positives = 38/81 (46%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLAY 378 +Y+ ++P D T E++ +L +G V +K ++ +G++KG A + + Sbjct: 20 VYLGSIPYDQTEEQILDLCSNVGPVINLKM-------------MFDPQTGRSKGYAFIEF 66 Query: 377 EDPSAAHSAGGFYNDYDMRGR 315 D ++ SA N Y + R Sbjct: 67 RDLESSASAVRNLNGYQLGSR 87
>MLO3_SCHPO (Q09330) Protein mlo3| Length = 199 Score = 32.7 bits (73), Expect = 1.1 Identities = 23/80 (28%), Positives = 39/80 (48%) Frame = -3 Query: 560 RIYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLA 381 +I +SNLP DVT +++ELF + +G K+ + + +G++KG A + Sbjct: 56 KIIVSNLPTDVTEAQVKELF--VKSIGPCKR-----------VSLAYGPNGRSKGIATII 102 Query: 380 YEDPSAAHSAGGFYNDYDMR 321 + P A A Y Y+ R Sbjct: 103 FSRPGDATRA---YEQYEGR 119
>PABP2_MOUSE (Q8CCS6) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 301 Score = 32.7 bits (73), Expect = 1.1 Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 1/99 (1%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDD-SGKAKGDACLA 381 IY+ N+ T EEL+ F G G V R + I D SG KG A + Sbjct: 169 IYVGNVDYGATAEELEAHFHGCGSVNR--------------VTILCDKFSGHPKGFAYIE 214 Query: 380 YEDPSAAHSAGGFYNDYDMRGRKISVVMAEKSAPRAPTS 264 + D + ++ ++ RGR+I V+ + P T+ Sbjct: 215 FSDKESVRTSLAL-DESLFRGRQIKVIPKRTNRPGISTT 252
>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein| 23) (RNA-binding region-containing protein 4) (Splicing factor SF2) Length = 439 Score = 32.3 bits (72), Expect = 1.5 Identities = 19/86 (22%), Positives = 40/86 (46%) Frame = -3 Query: 560 RIYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLA 381 R+Y+ +L ++T + L+ +F G++ I + + D+G++KG + Sbjct: 264 RLYVGSLHFNITEDMLRGIFEPFGKIDNI-------------VLMKDSDTGRSKGYGFIT 310 Query: 380 YEDPSAAHSAGGFYNDYDMRGRKISV 303 + D A A N +++ GR + V Sbjct: 311 FSDSECARRALEQLNGFELAGRPMRV 336
>NUCL_XENLA (P20397) Nucleolin (Protein C23)| Length = 650 Score = 32.3 bits (72), Expect = 1.5 Identities = 25/85 (29%), Positives = 37/85 (43%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLAY 378 +++ N+P TVEELQE+F KD I+I T G KG A + + Sbjct: 326 LFVKNIPYSTTVEELQEIF------------ENAKD-----IRIPTGKDGSNKGIAYVEF 368 Query: 377 EDPSAAHSAGGFYNDYDMRGRKISV 303 + A+ A ++ GR I V Sbjct: 369 SNEDEANKALEEKQGAEIEGRSIFV 393
>RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2| Length = 326 Score = 32.3 bits (72), Expect = 1.5 Identities = 23/85 (27%), Positives = 38/85 (44%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLAY 378 I++ LP ++T ++ +F G++ I R K +GK+KG L Y Sbjct: 38 IFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKK-------------TGKSKGFCFLCY 84 Query: 377 EDPSAAHSAGGFYNDYDMRGRKISV 303 ED + A +N ++GR I V Sbjct: 85 EDQRSTVLAVDNFNGIKIKGRTIRV 109
>RBMX2_HUMAN (Q9Y388) RNA-binding motif protein, X-linked 2| Length = 322 Score = 32.0 bits (71), Expect = 1.9 Identities = 23/85 (27%), Positives = 38/85 (44%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLAY 378 I++ LP ++T ++ +F G++ I R K +GK+KG L Y Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKK-------------TGKSKGFCFLCY 84 Query: 377 EDPSAAHSAGGFYNDYDMRGRKISV 303 ED + A +N ++GR I V Sbjct: 85 EDQRSTILAVDNFNGIKIKGRTIRV 109
>PM14_DROME (Q9VRV7) Pre-mRNA branch site p14-like protein| Length = 121 Score = 32.0 bits (71), Expect = 1.9 Identities = 19/86 (22%), Positives = 41/86 (47%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLAY 378 +Y+ NLP +T +E+ ++FG G + +I+ ++ + +G A + Y Sbjct: 17 LYVRNLPYKITSDEMYDIFGKFGAIRQIR----------------VGNTPETRGTAFVVY 60 Query: 377 EDPSAAHSAGGFYNDYDMRGRKISVV 300 ED A +A + +++ R + V+ Sbjct: 61 EDIFDAKNACDHLSGFNVCNRYLVVL 86
>GBP2_YEAST (P25555) Single-strand telomeric DNA-binding protein GBP2| (G-strand-binding protein 2) (RAP1 localization factor 6) Length = 427 Score = 32.0 bits (71), Expect = 1.9 Identities = 23/90 (25%), Positives = 39/90 (43%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLAY 378 IY SNLP +L +LFG IG++ N ++ ++G+ G A + Y Sbjct: 351 IYCSNLPFSTARSDLFDLFGPIGKIN--------------NAELKPQENGQPTGVAVVEY 396 Query: 377 EDPSAAHSAGGFYNDYDMRGRKISVVMAEK 288 E+ A N+Y+ G + + A + Sbjct: 397 ENLVDADFCIQKLNNYNYGGCSLQISYARR 426 Score = 30.8 bits (68), Expect = 4.3 Identities = 13/25 (52%), Positives = 19/25 (76%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQV 483 I++ NL D T E+L+ELFG +G+V Sbjct: 124 IFVRNLTFDCTPEDLKELFGTVGEV 148
>HNRPC_RAT (P17132) Heterogeneous nuclear ribonucleoprotein C (hnRNP C) (hnRNP| core protein C) (Fragment) Length = 158 Score = 31.6 bits (70), Expect = 2.5 Identities = 12/30 (40%), Positives = 20/30 (66%) Frame = -3 Query: 560 RIYISNLPPDVTVEELQELFGGIGQVGRIK 471 +I++ L PD E+++E FGG G+V I+ Sbjct: 35 KIFVGGLSPDTPEEKIREYFGGFGEVESIE 64
>NONA_DROME (Q04047) Protein no-on-transient A (Puff-specific protein Bj6)| Length = 700 Score = 31.6 bits (70), Expect = 2.5 Identities = 12/29 (41%), Positives = 20/29 (68%) Frame = -3 Query: 560 RIYISNLPPDVTVEELQELFGGIGQVGRI 474 R+Y+ NL D+T +EL+E+F G++ I Sbjct: 303 RLYVGNLTNDITDDELREMFKPYGEISEI 331
>SXL_MUSDO (O17310) Sex-lethal homolog| Length = 324 Score = 31.6 bits (70), Expect = 2.5 Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 2/92 (2%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLAY 378 +Y++NLP +T +EL+++F G+ G I QK +D+ +G+ +G A + + Sbjct: 190 LYVTNLPRTITDDELEKIF---GKYGNIVQKNILRDKL----------TGRPRGVAFVRF 236 Query: 377 EDPSAAHSAGGFYNDYDMRG--RKISVVMAEK 288 A A N+ G + ++V +AE+ Sbjct: 237 NKREEAQEAISALNNVIPEGASQPLTVRLAEE 268
>RBM12_MOUSE (Q8R4X3) RNA-binding protein 12 (RNA-binding motif protein 12)| (SH3/WW domain anchor protein in the nucleus) (SWAN) Length = 1002 Score = 31.6 bits (70), Expect = 2.5 Identities = 20/87 (22%), Positives = 41/87 (47%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLAY 378 I + N+P V+++E+ + F G + P ++ + ++ G G+A +A+ Sbjct: 928 IKVQNMPFTVSIDEILDFFYGYQVI-------------PGSVCLKYNEKGMPTGEAMVAF 974 Query: 377 EDPSAAHSAGGFYNDYDMRGRKISVVM 297 E A +A ND + RK+ +V+ Sbjct: 975 ESRDEATAAVIDLNDRPIGSRKVKLVL 1001
>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1| Length = 841 Score = 31.6 bits (70), Expect = 2.5 Identities = 25/96 (26%), Positives = 43/96 (44%) Frame = -3 Query: 560 RIYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLA 381 +I I NLP + T ++L ELFG GQ+ ++ + + DQ A+G A + Sbjct: 718 KIIIKNLPFEATRKDLLELFGAFGQLKSVRVPKKF-DQ-------------SARGFAFVE 763 Query: 380 YEDPSAAHSAGGFYNDYDMRGRKISVVMAEKSAPRA 273 + A +A + GR++ + AE+ A Sbjct: 764 FNLMKEAETAMSQLEGVHLLGRRLVMQYAEQDPENA 799
>HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 31.6 bits (70), Expect = 2.5 Identities = 12/30 (40%), Positives = 20/30 (66%) Frame = -3 Query: 560 RIYISNLPPDVTVEELQELFGGIGQVGRIK 471 +I++ L PD E+++E FGG G+V I+ Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIE 212
>HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 31.6 bits (70), Expect = 2.5 Identities = 12/30 (40%), Positives = 20/30 (66%) Frame = -3 Query: 560 RIYISNLPPDVTVEELQELFGGIGQVGRIK 471 +I++ L PD E+++E FGG G+V I+ Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIE 212
>HNRU2_HUMAN (P07029) Heterogeneous nuclear ribonucleoprotein UP2 (Fragment)| Length = 225 Score = 31.6 bits (70), Expect = 2.5 Identities = 12/30 (40%), Positives = 20/30 (66%) Frame = -3 Query: 560 RIYISNLPPDVTVEELQELFGGIGQVGRIK 471 +I++ L PD E+++E FGG G+V I+ Sbjct: 173 KIFVGGLSPDTPEEKIREYFGGFGEVESIE 202
>RSP6_CAEEL (Q18409) Probable splicing factor, arginine/serine-rich 6| (RNA-binding protein srp-1) (CeSRp20) Length = 179 Score = 31.6 bits (70), Expect = 2.5 Identities = 10/29 (34%), Positives = 20/29 (68%) Frame = -3 Query: 560 RIYISNLPPDVTVEELQELFGGIGQVGRI 474 ++Y+ LP D T +EL+E+F G++ ++ Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKV 32
>HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 353 Score = 31.6 bits (70), Expect = 2.5 Identities = 12/30 (40%), Positives = 20/30 (66%) Frame = -3 Query: 560 RIYISNLPPDVTVEELQELFGGIGQVGRIK 471 +I++ L PD E+++E FGG G+V I+ Sbjct: 181 KIFVGGLSPDTPEEKIREYFGGFGEVESIE 210
>THOC4_HUMAN (Q86V81) THO complex subunit 4 (Tho4) (Ally of AML-1 and LEF-1)| (Transcriptional coactivator Aly/REF) (bZIP-enhancing factor BEF) Length = 256 Score = 31.6 bits (70), Expect = 2.5 Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 2/99 (2%) Frame = -3 Query: 560 RIYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLA 381 ++ +SNL V+ ++QELF G + + ++ D SG++ G A + Sbjct: 106 KLLVSNLDFGVSDADIQELFAEFGTLKKAA--------------VHYDRSGRSLGTADVH 151 Query: 380 YEDPSAAHSAGGFYNDYDMRGR--KISVVMAEKSAPRAP 270 +E + A A YN + GR I +V ++ A R P Sbjct: 152 FERKADALKAMKQYNGVPLDGRPMNIQLVTSQIDAQRRP 190
>RBM12_MACMU (Q8SQ27) RNA-binding protein 12 (RNA-binding motif protein 12)| (SH3/WW domain anchor protein in the nucleus) (SWAN) Length = 932 Score = 31.6 bits (70), Expect = 2.5 Identities = 20/87 (22%), Positives = 41/87 (47%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLAY 378 I + N+P V+++E+ + F G + P ++ + ++ G G+A +A+ Sbjct: 858 IKVQNMPFTVSIDEILDFFYGYQVI-------------PGSVCLKYNEKGMPTGEAMVAF 904 Query: 377 EDPSAAHSAGGFYNDYDMRGRKISVVM 297 E A +A ND + RK+ +V+ Sbjct: 905 ESRDEATAAVIDLNDRPIGSRKVKLVL 931
>RBM12_HUMAN (Q9NTZ6) RNA-binding protein 12 (RNA-binding motif protein 12)| (SH3/WW domain anchor protein in the nucleus) (SWAN) Length = 932 Score = 31.6 bits (70), Expect = 2.5 Identities = 20/87 (22%), Positives = 41/87 (47%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLAY 378 I + N+P V+++E+ + F G + P ++ + ++ G G+A +A+ Sbjct: 858 IKVQNMPFTVSIDEILDFFYGYQVI-------------PGSVCLKYNEKGMPTGEAMVAF 904 Query: 377 EDPSAAHSAGGFYNDYDMRGRKISVVM 297 E A +A ND + RK+ +V+ Sbjct: 905 ESRDEATAAVIDLNDRPIGSRKVKLVL 931
>NRP1_YEAST (P32770) Asparagine-rich protein (Protein ARP)| Length = 719 Score = 31.2 bits (69), Expect = 3.3 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 8/62 (12%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFG--GIGQVG------RIKQKRGYKDQWPWNIKIYTDDSGKA 402 +Y++NLPPD T EL+ F G+ VG ++ + W N Y +D Sbjct: 228 LYMNNLPPDTTQSELESWFTQYGVRPVGFWTVKNIVEDTSNVNNNWSLNNSPYVEDQDSI 287 Query: 401 KG 396 G Sbjct: 288 SG 289
>SRP2_SCHPO (P78814) Pre-mRNA-splicing factor srp2| Length = 365 Score = 31.2 bits (69), Expect = 3.3 Identities = 11/35 (31%), Positives = 20/35 (57%) Frame = -3 Query: 560 RIYISNLPPDVTVEELQELFGGIGQVGRIKQKRGY 456 R+++ +PP T E++ + F G GQ+ K G+ Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQILDCKLMNGF 39
>IF34_SCHPO (P78795) Probable eukaryotic translation initiation factor 3| RNA-binding subunit (eIF-3 RNA-binding subunit) (eIF3 p33) (Translation initiation factor eIF3, p33 subunit) Length = 282 Score = 31.2 bits (69), Expect = 3.3 Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 3/95 (3%) Frame = -3 Query: 551 ISNLPPDVTVEELQEL---FGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLA 381 ++NL D EEL++L FGGI +V K K ++G+AKG A ++ Sbjct: 206 VTNLSDDTREEELRDLFRRFGGIQRVYLAKDK----------------ETGRAKGFAFVS 249 Query: 380 YEDPSAAHSAGGFYNDYDMRGRKISVVMAEKSAPR 276 Y D A A + Y G ++ E S PR Sbjct: 250 YYDRDCAIKARDRLDGY---GWNNLILRCEFSKPR 281
>SXL_DROME (P19339) Protein sex-lethal| Length = 354 Score = 31.2 bits (69), Expect = 3.3 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 2/92 (2%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLAY 378 +Y++NLP +T ++L +F G+ G I QK +D+ +G+ +G A + Y Sbjct: 213 LYVTNLPRTITDDQLDTIF---GKYGSIVQKNILRDKL----------TGRPRGVAFVRY 259 Query: 377 EDPSAAHSAGGFYNDYDMRG--RKISVVMAEK 288 A A N+ G + +SV +AE+ Sbjct: 260 NKREEAQEAISALNNVIPEGGSQPLSVRLAEE 291
>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 960 Score = 31.2 bits (69), Expect = 3.3 Identities = 14/33 (42%), Positives = 17/33 (51%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRG 459 I + NLP ELQE FG G +GR+ G Sbjct: 589 ILVKNLPAGTLAAELQETFGRFGSLGRVLLPEG 621
>IF34_CAEEL (Q19706) Probable eukaryotic translation initiation factor 3| subunit 4 (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3g) Length = 256 Score = 31.2 bits (69), Expect = 3.3 Identities = 13/26 (50%), Positives = 21/26 (80%) Frame = -3 Query: 551 ISNLPPDVTVEELQELFGGIGQVGRI 474 ++NLP ++ +EL++LFG IG+V RI Sbjct: 180 VTNLPQEMNEDELRDLFGKIGRVIRI 205
>SFRS1_ARATH (O22315) Pre-mRNA-splicing factor SF2 (SR1 protein)| Length = 303 Score = 31.2 bits (69), Expect = 3.3 Identities = 22/88 (25%), Positives = 40/88 (45%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLAY 378 +Y+ NLP D+ E+++LF G V +I ++K+ + G A + + Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQI------------DLKV----PPRPPGYAFVEF 52 Query: 377 EDPSAAHSAGGFYNDYDMRGRKISVVMA 294 +D A A + YD G ++ V +A Sbjct: 53 DDARDAEDAIHGRDGYDFDGHRLRVELA 80
>MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing protein 1| Length = 828 Score = 30.8 bits (68), Expect = 4.3 Identities = 21/96 (21%), Positives = 41/96 (42%) Frame = -3 Query: 560 RIYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLA 381 +I I NLP + T +++Q+LFG G + ++ + + + +++G A Sbjct: 704 KILIKNLPFEATKKDVQKLFGAFGSLKTVRVPKKF--------------NSESRGFAFAE 749 Query: 380 YEDPSAAHSAGGFYNDYDMRGRKISVVMAEKSAPRA 273 Y A A + GR++ + A+ A A Sbjct: 750 YVSAKEAEHAMSALQGTHLLGRRLVLQYAQADASNA 785
>CLCB_ECO57 (Q8X794) Voltage-gated ClC-type chloride channel clcB| Length = 418 Score = 30.8 bits (68), Expect = 4.3 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 5/82 (6%) Frame = +3 Query: 387 ASISFGFSRIISVDFYVPGPLVFVATFLLDPSNLANSSKKLLQFLNSHIRGQV*DVNPCI 566 A + FG + S+ GP++ A L SNL N S LL + + Q D I Sbjct: 171 AEVLFGTMMLASL-----GPVIISAVVALLVSNLINHSDALLYSVQLSVTVQARDYALII 225 Query: 567 VAGIIT-----VCITLLNLCSR 617 G++ + +TL+N C R Sbjct: 226 STGVLAGLCGPLLLTLMNACHR 247
>RNP4F_DROME (Q9W4D2) RNA-binding protein 4F| Length = 941 Score = 30.8 bits (68), Expect = 4.3 Identities = 23/89 (25%), Positives = 37/89 (41%) Frame = -3 Query: 560 RIYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLA 381 +I++ NL P + EEL ELF G + ++ Q+ KG A + Sbjct: 725 KIFVRNLHPACSKEELHELFSPFGTIKDVRLVHKLNKQF--------------KGIAYVE 770 Query: 380 YEDPSAAHSAGGFYNDYDMRGRKISVVMA 294 +E P A A + +G ISV ++ Sbjct: 771 FEKPGEAQRAVAGRDGCLFKGMNISVAIS 799
>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) Length = 660 Score = 30.4 bits (67), Expect = 5.7 Identities = 22/94 (23%), Positives = 40/94 (42%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLAY 378 +Y+ NLP ++ +EL++ FG G + + + D SG ++ + + Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVIS--------------SAVVMRDQSGNSRCFGFVNF 276 Query: 377 EDPSAAHSAGGFYNDYDMRGRKISVVMAEKSAPR 276 E AA SA N + + V A+K + R Sbjct: 277 ECTEAAASAVEKMNGISLGDDVLYVGRAQKKSER 310
>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1| Length = 861 Score = 30.4 bits (67), Expect = 5.7 Identities = 22/96 (22%), Positives = 42/96 (43%) Frame = -3 Query: 560 RIYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLA 381 +I + NLP + T +++ ELF GQ+ ++ + + A+G A + Sbjct: 739 KIIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKF--------------DKSARGFAFVE 784 Query: 380 YEDPSAAHSAGGFYNDYDMRGRKISVVMAEKSAPRA 273 + P A +A + GR++ + AE+ A A Sbjct: 785 FVLPKEAENAMDQLQGVHLLGRRLVMQPAEQEAANA 820
>WHI3_YEAST (P34761) Protein WHI3| Length = 661 Score = 30.4 bits (67), Expect = 5.7 Identities = 11/21 (52%), Positives = 16/21 (76%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGG 495 +Y+ NLP D T +EL++LF G Sbjct: 540 LYVGNLPSDATEQELRQLFSG 560
>HSH49_YEAST (Q99181) Protein HSH49| Length = 213 Score = 30.4 bits (67), Expect = 5.7 Identities = 14/29 (48%), Positives = 19/29 (65%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIK 471 +Y+ N+ P +T E+L ELF I V RIK Sbjct: 11 VYVGNIDPRITKEQLYELFIQINPVLRIK 39
>CLCB_ECOLI (P76175) Voltage-gated ClC-type chloride channel clcB| Length = 418 Score = 30.4 bits (67), Expect = 5.7 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 5/82 (6%) Frame = +3 Query: 387 ASISFGFSRIISVDFYVPGPLVFVATFLLDPSNLANSSKKLLQFLNSHIRGQV*DVNPCI 566 A + FG + S+ GP++ A L SNL N S LL + + Q D I Sbjct: 171 AEVLFGTMMLASL-----GPVIISAVVALLVSNLINHSDALLYNVQLSVTVQARDYALII 225 Query: 567 VAGIIT-----VCITLLNLCSR 617 G++ + +TL+N C R Sbjct: 226 STGVLAGLCGPLLLTLMNACHR 247
>CLCB_ECOL6 (Q8FHC1) Voltage-gated ClC-type chloride channel clcB| Length = 418 Score = 30.4 bits (67), Expect = 5.7 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 5/82 (6%) Frame = +3 Query: 387 ASISFGFSRIISVDFYVPGPLVFVATFLLDPSNLANSSKKLLQFLNSHIRGQV*DVNPCI 566 A + FG + S+ GP++ A L SNL N S LL + + Q D I Sbjct: 171 AEVLFGTMMLASL-----GPVIISAVVALLISNLINHSDALLYSVQLSVTVQARDYALII 225 Query: 567 VAGIIT-----VCITLLNLCSR 617 G++ + +TL+N C R Sbjct: 226 STGVLAGLCGPLLLTLMNACHR 247
>TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (RA301) Length = 288 Score = 30.4 bits (67), Expect = 5.7 Identities = 21/89 (23%), Positives = 37/89 (41%) Frame = -3 Query: 527 TVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLAYEDPSAAHSAG 348 T +L+E+F G + + +Y S +++G A + +E+ A A Sbjct: 130 TERDLREVFSKYGPIADVSI-------------VYDQQSRRSRGFAFVYFENVDDAKEAK 176 Query: 347 GFYNDYDMRGRKISVVMAEKSAPRAPTSG 261 N ++ GR+I V + P PT G Sbjct: 177 ERANGMELDGRRIRVDFSITKRPHTPTPG 205
>TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (Silica-induced gene 41 protein) (SIG-41) Length = 288 Score = 30.4 bits (67), Expect = 5.7 Identities = 21/89 (23%), Positives = 37/89 (41%) Frame = -3 Query: 527 TVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLAYEDPSAAHSAG 348 T +L+E+F G + + +Y S +++G A + +E+ A A Sbjct: 130 TERDLREVFSKYGPIADVSI-------------VYDQQSRRSRGFAFVYFENVDDAKEAK 176 Query: 347 GFYNDYDMRGRKISVVMAEKSAPRAPTSG 261 N ++ GR+I V + P PT G Sbjct: 177 ERANGMELDGRRIRVDFSITKRPHTPTPG 205
>TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) Length = 288 Score = 30.4 bits (67), Expect = 5.7 Identities = 21/89 (23%), Positives = 37/89 (41%) Frame = -3 Query: 527 TVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLAYEDPSAAHSAG 348 T +L+E+F G + + +Y S +++G A + +E+ A A Sbjct: 130 TERDLREVFSKYGPIADVSI-------------VYDQQSRRSRGFAFVYFENVDDAKEAK 176 Query: 347 GFYNDYDMRGRKISVVMAEKSAPRAPTSG 261 N ++ GR+I V + P PT G Sbjct: 177 ERANGMELDGRRIRVDFSITKRPHTPTPG 205
>HRB1_YEAST (P38922) Protein HRB1 (Protein TOM34)| Length = 429 Score = 30.4 bits (67), Expect = 5.7 Identities = 23/90 (25%), Positives = 37/90 (41%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLAY 378 IY SNLP +L +LF IG+V N ++ D G G A + Y Sbjct: 353 IYCSNLPFSTAKSDLYDLFETIGKVN--------------NAELRYDSKGAPTGIAVVEY 398 Query: 377 EDPSAAHSAGGFYNDYDMRGRKISVVMAEK 288 ++ A N+Y+ G + + A++ Sbjct: 399 DNVDDADVCIERLNNYNYGGCDLDISYAKR 428
>PTBP1_RAT (Q00438) Polypyrimidine tract-binding protein 1 (PTB)| (Heterogeneous nuclear ribonucleoprotein I) (hnRNP I) (Pyrimidine-binding protein) (PYBP) Length = 555 Score = 30.0 bits (66), Expect = 7.4 Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 1/100 (1%) Frame = -3 Query: 557 IYISNLPPD-VTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLA 381 + +SNL P+ VT + L LFG G V R+K K+ +A + Sbjct: 363 LLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKE------------------NALVE 404 Query: 380 YEDPSAAHSAGGFYNDYDMRGRKISVVMAEKSAPRAPTSG 261 D S A A N + + G+ + + +++ + + P G Sbjct: 405 MADGSQAQLAMSHLNGHKLHGKSVRITLSKHQSVQLPREG 444
>PTBP1_BOVIN (Q8WN55) Polypyrimidine tract-binding protein 1 (PTB)| Length = 531 Score = 30.0 bits (66), Expect = 7.4 Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 1/100 (1%) Frame = -3 Query: 557 IYISNLPPD-VTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLA 381 + +SNL P+ VT + L LFG G V R+K K+ +A + Sbjct: 339 LLVSNLNPERVTPQSLFILFGVYGDVQRVKVLFNKKE------------------NALVQ 380 Query: 380 YEDPSAAHSAGGFYNDYDMRGRKISVVMAEKSAPRAPTSG 261 D S A A N + + G+ + + +++ + + P G Sbjct: 381 MADGSQAQLAMSHLNGHKLHGKPVRITLSKHQSVQLPREG 420
>SXL_DROSU (Q24668) Protein sex-lethal| Length = 354 Score = 30.0 bits (66), Expect = 7.4 Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 2/92 (2%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLAY 378 +Y++NLP +T ++L +F G+ G I QK +D+ +G+ +G A + Y Sbjct: 215 LYVTNLPRTITDDQLDTIF---GKYGSIVQKNILRDKL----------TGRPRGVAFVRY 261 Query: 377 EDPSAAHSAGGFYNDYDMRG--RKISVVMAEK 288 A A N+ G + +SV +A++ Sbjct: 262 NKREEAQEAISALNNVIPEGGSQPLSVRLAQE 293
>THOC4_MOUSE (O08583) THO complex subunit 4 (Tho4) (RNA and export| factor-binding protein 1) (REF1-I) (Ally of AML-1 and LEF-1) (Aly/REF) Length = 254 Score = 30.0 bits (66), Expect = 7.4 Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 2/99 (2%) Frame = -3 Query: 560 RIYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLA 381 ++ +SNL V+ ++QELF G + + ++ D SG++ G A + Sbjct: 105 KLLVSNLDFGVSDADIQELFAEFGTLKKAA--------------VHYDRSGRSLGTADVH 150 Query: 380 YEDPSAAHSAGGFYNDYDMRGR--KISVVMAEKSAPRAP 270 +E + A A YN + GR I +V ++ R P Sbjct: 151 FERKADALKAMKQYNGVPLDGRPMNIQLVTSQIDTQRRP 189
>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription| termination factor ctf1) Length = 363 Score = 30.0 bits (66), Expect = 7.4 Identities = 19/85 (22%), Positives = 36/85 (42%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLAY 378 +++ N+P DV+ +++ E+F +G V K + ++G KG + Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFK-------------LVLDPETGSGKGYGFCEF 55 Query: 377 EDPSAAHSAGGFYNDYDMRGRKISV 303 D A N+ ++ RKI V Sbjct: 56 FDSETTAMAVRKLNNSELGPRKIRV 80
>SXL_CERCA (O61374) Sex-lethal homolog (CCSXL)| Length = 348 Score = 29.6 bits (65), Expect = 9.7 Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 2/92 (2%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLAY 378 +Y++NLP +T ++L +F G+ G I QK +D+ +GK +G A + + Sbjct: 198 LYVTNLPRTITDDQLDTIF---GKYGMIVQKNILRDKL----------TGKPRGVAFVRF 244 Query: 377 EDPSAAHSAGGFYNDYDMRG--RKISVVMAEK 288 A A N+ G + ++V +AE+ Sbjct: 245 NKREEAQEAISALNNVIPEGASQPLTVRLAEE 276
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor| Length = 324 Score = 29.6 bits (65), Expect = 9.7 Identities = 22/100 (22%), Positives = 40/100 (40%) Frame = -3 Query: 560 RIYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLA 381 R+Y+ NLP +T +L E+F G V ++ +Y + +++G A + Sbjct: 115 RLYVGNLPFSMTSSQLSEIFAEAGTVANVE-------------IVYDRVTDRSRGFAFVT 161 Query: 380 YEDPSAAHSAGGFYNDYDMRGRKISVVMAEKSAPRAPTSG 261 A A ++ + GR + V + P P G Sbjct: 162 MGSVEEAKEAIRLFDGSQVGGRTVKV-----NFPEVPRGG 196
>PAB2_SCHPO (O14327) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (Poly(A)-binding protein II) (PABII) Length = 166 Score = 29.6 bits (65), Expect = 9.7 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 1/70 (1%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDD-SGKAKGDACLA 381 +Y+ N+ VT EELQ F G V R + I D +G KG A + Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVNR--------------VTILCDKFTGHPKGFAYIE 102 Query: 380 YEDPSAAHSA 351 + +PS +A Sbjct: 103 FSEPSLVPNA 112
>PTBP2_RAT (Q66H20) Polypyrimidine tract-binding protein 2 (Neural| polypyrimidine tract-binding protein) (PTB-like protein) Length = 531 Score = 29.6 bits (65), Expect = 9.7 Identities = 13/36 (36%), Positives = 23/36 (63%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKD 450 +++SN+PP V E+L+ LF G G +K + ++D Sbjct: 457 LHLSNIPPSVAEEDLRTLFANTG--GTVKAFKFFQD 490
>PTBP2_MOUSE (Q91Z31) Polypyrimidine tract-binding protein 2 (Brain-enriched| polypyrimidine tract-binding protein) (Brain-enriched PTB) (RRM-type RNA-binding protein brPTB) (Neural polypyrimidine tract-binding protein) Length = 531 Score = 29.6 bits (65), Expect = 9.7 Identities = 13/36 (36%), Positives = 23/36 (63%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKD 450 +++SN+PP V E+L+ LF G G +K + ++D Sbjct: 457 LHLSNIPPSVAEEDLRTLFANTG--GTVKAFKFFQD 490
>PTBP2_HUMAN (Q9UKA9) Polypyrimidine tract-binding protein 2 (Neurally-enriched| homolog of PTB) (Neural polypyrimidine tract-binding protein) (PTB-like protein) Length = 531 Score = 29.6 bits (65), Expect = 9.7 Identities = 13/36 (36%), Positives = 23/36 (63%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKD 450 +++SN+PP V E+L+ LF G G +K + ++D Sbjct: 457 LHLSNIPPSVAEEDLRTLFANTG--GTVKAFKFFQD 490
>RU17_MOUSE (Q62376) U1 small nuclear ribonucleoprotein 70 kDa (U1 SNRNP 70| kDa) (snRNP70) Length = 448 Score = 29.6 bits (65), Expect = 9.7 Identities = 21/85 (24%), Positives = 37/85 (43%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLAY 378 ++++ + D T +L+ F G + RI +Y+ SGK +G A + Y Sbjct: 105 LFVARVNYDTTESKLRREFEVYGPIKRIHM-------------VYSKRSGKPRGYAFIEY 151 Query: 377 EDPSAAHSAGGFYNDYDMRGRKISV 303 E HSA + + GR++ V Sbjct: 152 EHERDMHSAYKHADGKKIDGRRVLV 176
>RU17_HUMAN (P08621) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 437 Score = 29.6 bits (65), Expect = 9.7 Identities = 21/85 (24%), Positives = 37/85 (43%) Frame = -3 Query: 557 IYISNLPPDVTVEELQELFGGIGQVGRIKQKRGYKDQWPWNIKIYTDDSGKAKGDACLAY 378 ++++ + D T +L+ F G + RI +Y+ SGK +G A + Y Sbjct: 105 LFVARVNYDTTESKLRREFEVYGPIKRIHM-------------VYSKRSGKPRGYAFIEY 151 Query: 377 EDPSAAHSAGGFYNDYDMRGRKISV 303 E HSA + + GR++ V Sbjct: 152 EHERDMHSAYKHADGKKIDGRRVLV 176 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 88,665,514 Number of Sequences: 219361 Number of extensions: 1667353 Number of successful extensions: 4981 Number of sequences better than 10.0: 149 Number of HSP's better than 10.0 without gapping: 4662 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4939 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7309604013 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
