ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal13b10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_468187.1| Oryza sativa (japonica cultivar-group), mRNA 305 1e-79
2ref|XM_468186.1| Oryza sativa (japonica cultivar-group), mRNA 305 1e-79
3dbj|AK066747.1| Oryza sativa (japonica cultivar-group) cDNA clon... 297 3e-77
4dbj|AK060825.1| Oryza sativa (japonica cultivar-group) cDNA clon... 293 4e-76
5gb|AY106678.1| Zea mays PCO130308 mRNA sequence 248 2e-62
6dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 153 1e-33
7dbj|AP005535.3| Oryza sativa (japonica cultivar-group) genomic D... 153 1e-33
8dbj|AP003984.3| Oryza sativa (japonica cultivar-group) genomic D... 153 1e-33
9ref|NM_129684.2| Arabidopsis thaliana amino acid permease AT2G41... 42 2.5
10gb|AC120348.9| Mus musculus chromosome 5, clone RP23-55P22, comp... 42 2.5
11gb|AF487277.1| Lecanicillium muscarium, complete genome 42 2.5
12ref|XM_816496.1| Trypanosoma cruzi strain CL Brener hypothetical... 42 2.5
13gb|AC019028.13| Mus musculus chromosome 5, clone RP23-88A22, com... 42 2.5
14gb|BT000792.1| Arabidopsis thaliana clone RAFL05-20-J01 (R10342)... 42 2.5
15gb|AY079364.1| Arabidopsis thaliana unknown protein (At2g41190) ... 42 2.5
16gb|AY039978.1| Arabidopsis thaliana unknown protein (At2g41190) ... 42 2.5
17emb|X55026.1|MTPACG Podospora anserina complete mitochondrial ge... 42 2.5
18gb|AY945289.1| Fusarium oxysporum strain F11 mitochondrion, comp... 42 2.5
19emb|X13337.1|MINCND2D Neurospora crassa mitochondrial DNA with d... 42 2.5
20gb|AF447590.1| Hypocrea jecorina mitochondrion, complete genome 42 2.5
21gb|AC153774.3| Loxodonta africana clone VMRC15-554J14, complete ... 42 2.5
22gb|AY548158.1| Neurospora intermedia isolate M1991-60 tRNA-Met g... 42 2.5
23emb|Z34001.1|NCMT19SRR N.crassa (74-OR23-1A (FGSC #2489)) mitoch... 42 2.5
24gb|AY874423.1| Fusarium oxysporum voucher VPRI 19292 mitochondri... 42 2.5
25gb|AF029891.1|AF029891 Cryphonectria parasitica small subunit ri... 42 2.5
26emb|X14734.1|MIPASMRR Podospora anserina mtDNA for small subunit... 42 2.5
27emb|Z69896.1|MTPCSSURR P.curvicolla mitochondrial small subunit ... 42 2.5
28gb|L33367.1|NEU19RRTR Neurospora crassa (clone p19StyrB1) mitoch... 42 2.5
29gb|J05254.1|NEUMTRG N.crassa mitochondrial small (19S) rRNA and ... 42 2.5
30gb|AC119932.7| Mus musculus chromosome 15, clone RP24-260C11, co... 40 9.9
31gb|AC146338.2| Oryza sativa (japonica cultivar-group) chromosome... 40 9.9
32gb|AC145272.2| Oryza sativa (japonica cultivar-group) chromosome... 40 9.9
33ref|NM_175526.1| Mus musculus C-type lectin domain family 1, mem... 40 9.9
34gb|AC140313.2| Mus musculus BAC clone RP24-324C6 from chromosome... 40 9.9
35gb|AC098734.3| Mus musculus BAC clone RP23-121L4 from 14, comple... 40 9.9
36gb|AC105403.2| Mus musculus BAC clone RP24-111L5 from 3, complet... 40 9.9
37ref|XM_662925.1| Cryptosporidium hominis TU502 hypothetical prot... 40 9.9
38gb|AC114559.8| Mus musculus, clone RP23-50G21, complete sequence 40 9.9
39emb|CR538741.13| Zebrafish DNA sequence from clone DKEY-97J15 in... 40 9.9
40gb|AC161602.4| Mus musculus BAC clone RP23-336I5 from chromosome... 40 9.9
41gb|AC021010.8| Homo sapiens, clone RP11-69D2, complete sequence 40 9.9
42gb|AE014173.1| Mus musculus piebald deletion region section 1 of... 40 9.9
43gb|AC023934.6| Homo sapiens chromosome 17, clone RP11-618P13, co... 40 9.9
44gb|AC024681.12| Homo sapiens chromosome 8, clone RP11-622O11, co... 40 9.9
45gb|AC080021.3| Genomic sequence for Mus musculus, clone RP23-422... 40 9.9
46dbj|AK031121.1| Mus musculus 13 days embryo forelimb cDNA, RIKEN... 40 9.9
47dbj|AK036846.1| Mus musculus adult female vagina cDNA, RIKEN ful... 40 9.9
48dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.9
49gb|AC104031.6| Homo sapiens chromosome 11, clone RP11-483L5, com... 40 9.9
50gb|AC106901.4| Homo sapiens BAC clone RP11-1178E6 from 2, comple... 40 9.9
51gb|AC009496.3| Homo sapiens BAC clone RP11-500G18 from 2, comple... 40 9.9
52dbj|BA000001.2| Pyrococcus horikoshii OT3 DNA, complete genome 40 9.9
53emb|BX005181.5| Mouse DNA sequence from clone RP24-364O14 on chr... 40 9.9
54gb|AC138620.4| Mus musculus BAC clone RP23-250E1 from 6, complet... 40 9.9 
>ref|XM_468187.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2143

 Score =  305 bits (154), Expect = 1e-79
 Identities = 269/306 (87%), Gaps = 1/306 (0%)
 Strand = Plus / Minus

                                                                        
Query: 398  atcttcaagaagcacaaggcgggcattatgacagccacaagtatactgagcagggatcca 457
            ||||||||||||||||  || ||||||||||| |||||||||||||| | ||| ||||||
Sbjct: 1791 atcttcaagaagcacagtgcaggcattatgacggccacaagtatactcaacagagatcca 1732

                                                                        
Query: 458  atcagagccatcaccaaaccgaagaatggaagaagaaatgcaatgacaacagttgatgcc 517
            || ||||||||||| | |||||| ||||| | |||||| ||||||   || |||||||| 
Sbjct: 1731 ataagagccatcacgagaccgaaaaatggcataagaaacgcaatgcacacggttgatgca 1672

                                                                        
Query: 518  acaaggctcgtcctcagtataatagagacaattgtttcgttcaaaaatccttcagggcgc 577
            ||||||   ||||||||||||||||||   ||||||||||||||||||||||||||||||
Sbjct: 1671 acaagggcagtcctcagtataatagagcagattgtttcgttcaaaaatccttcagggcgc 1612

                                                                        
Query: 578  aactcttctaaactccgagccaatgggtttaacaacaaggcaaatttggtgaaagggttg 637
            ||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 1611 aactcctctaaactccgagccaatgggtttaacaacagggcatatttggtgaaagggttg 1552

                                                                        
Query: 638  ataacccgtggtccacagagcaacttttgaggcaaatgactcttttggaagattcaaagt 697
            |||| ||||||||||||| || || || ||||||||||| | ||| |||||||||| |||
Sbjct: 1551 ataa-ccgtggtccacagtgcgaccttggaggcaaatgaatgtttaggaagattcagagt 1493

                  
Query: 698  tatttg 703
            ||||||
Sbjct: 1492 tatttg 1487
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>ref|XM_468186.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 864

 Score =  305 bits (154), Expect = 1e-79
 Identities = 269/306 (87%), Gaps = 1/306 (0%)
 Strand = Plus / Minus

                                                                       
Query: 398 atcttcaagaagcacaaggcgggcattatgacagccacaagtatactgagcagggatcca 457
           ||||||||||||||||  || ||||||||||| |||||||||||||| | ||| ||||||
Sbjct: 743 atcttcaagaagcacagtgcaggcattatgacggccacaagtatactcaacagagatcca 684

                                                                       
Query: 458 atcagagccatcaccaaaccgaagaatggaagaagaaatgcaatgacaacagttgatgcc 517
           || ||||||||||| | |||||| ||||| | |||||| ||||||   || |||||||| 
Sbjct: 683 ataagagccatcacgagaccgaaaaatggcataagaaacgcaatgcacacggttgatgca 624

                                                                       
Query: 518 acaaggctcgtcctcagtataatagagacaattgtttcgttcaaaaatccttcagggcgc 577
           ||||||   ||||||||||||||||||   ||||||||||||||||||||||||||||||
Sbjct: 623 acaagggcagtcctcagtataatagagcagattgtttcgttcaaaaatccttcagggcgc 564

                                                                       
Query: 578 aactcttctaaactccgagccaatgggtttaacaacaaggcaaatttggtgaaagggttg 637
           ||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 563 aactcctctaaactccgagccaatgggtttaacaacagggcatatttggtgaaagggttg 504

                                                                       
Query: 638 ataacccgtggtccacagagcaacttttgaggcaaatgactcttttggaagattcaaagt 697
           |||| ||||||||||||| || || || ||||||||||| | ||| |||||||||| |||
Sbjct: 503 ataa-ccgtggtccacagtgcgaccttggaggcaaatgaatgtttaggaagattcagagt 445

                 
Query: 698 tatttg 703
           ||||||
Sbjct: 444 tatttg 439
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>dbj|AK066747.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013088E05, full
            insert sequence
          Length = 2143

 Score =  297 bits (150), Expect = 3e-77
 Identities = 268/306 (87%), Gaps = 1/306 (0%)
 Strand = Plus / Minus

                                                                        
Query: 398  atcttcaagaagcacaaggcgggcattatgacagccacaagtatactgagcagggatcca 457
            ||||||||||||||||  || ||||||||||| |||||||||||||| | ||| ||||||
Sbjct: 1791 atcttcaagaagcacagtgcaggcattatgacggccacaagtatactcaacagagatcca 1732

                                                                        
Query: 458  atcagagccatcaccaaaccgaagaatggaagaagaaatgcaatgacaacagttgatgcc 517
            || ||||||||||| | |||||| ||||| | |||||| ||||||   || ||||| || 
Sbjct: 1731 ataagagccatcacgagaccgaaaaatggcataagaaacgcaatgcacacggttgacgca 1672

                                                                        
Query: 518  acaaggctcgtcctcagtataatagagacaattgtttcgttcaaaaatccttcagggcgc 577
            ||||||   ||||||||||||||||||   ||||||||||||||||||||||||||||||
Sbjct: 1671 acaagggcagtcctcagtataatagagcagattgtttcgttcaaaaatccttcagggcgc 1612

                                                                        
Query: 578  aactcttctaaactccgagccaatgggtttaacaacaaggcaaatttggtgaaagggttg 637
            ||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 1611 aactcctctaaactccgagccaatgggtttaacaacagggcatatttggtgaaagggttg 1552

                                                                        
Query: 638  ataacccgtggtccacagagcaacttttgaggcaaatgactcttttggaagattcaaagt 697
            |||| ||||||||||||| || || || ||||||||||| | ||| |||||||||| |||
Sbjct: 1551 ataa-ccgtggtccacagtgcgaccttggaggcaaatgaatgtttaggaagattcagagt 1493

                  
Query: 698  tatttg 703
            ||||||
Sbjct: 1492 tatttg 1487
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>dbj|AK060825.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-B05, full
           insert sequence
          Length = 1219

 Score =  293 bits (148), Expect = 4e-76
 Identities = 260/296 (87%), Gaps = 1/296 (0%)
 Strand = Plus / Minus

                                                                       
Query: 398 atcttcaagaagcacaaggcgggcattatgacagccacaagtatactgagcagggatcca 457
           ||||||||||||||||  || ||||||||||| |||||||||||||| | ||| ||||||
Sbjct: 722 atcttcaagaagcacagtgcaggcattatgacggccacaagtatactcaacagagatcca 663

                                                                       
Query: 458 atcagagccatcaccaaaccgaagaatggaagaagaaatgcaatgacaacagttgatgcc 517
           || ||||||||||| | |||||| ||||| | |||||| ||||||   || |||||||| 
Sbjct: 662 ataagagccatcacgagaccgaaaaatggcataagaaacgcaatgcacacggttgatgca 603

                                                                       
Query: 518 acaaggctcgtcctcagtataatagagacaattgtttcgttcaaaaatccttcagggcgc 577
           ||||||   ||||||||||||||||||   ||||||||||||||||||||||||||||||
Sbjct: 602 acaagggcagtcctcagtataatagagcagattgtttcgttcaaaaatccttcagggcgc 543

                                                                       
Query: 578 aactcttctaaactccgagccaatgggtttaacaacaaggcaaatttggtgaaagggttg 637
           ||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 542 aactcctctaaactccgagccaatgggtttaacaacagggcatatttggtgaaagggttg 483

                                                                   
Query: 638 ataacccgtggtccacagagcaacttttgaggcaaatgactcttttggaagattca 693
           |||| ||||||||||||| || || || ||||||||||| | ||| ||||||||||
Sbjct: 482 ataa-ccgtggtccacagtgcgaccttggaggcaaatgaatgtttaggaagattca 428
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>gb|AY106678.1| Zea mays PCO130308 mRNA sequence
          Length = 920

 Score =  248 bits (125), Expect = 2e-62
 Identities = 273/321 (85%), Gaps = 1/321 (0%)
 Strand = Plus / Minus

                                                                       
Query: 383 gctttattctgtgcgatcttcaagaagcacaaggcgggcattatgacagccacaagtata 442
           ||||| ||||| |||||||||| ||| |||||||  ||||||||||| ||||||||||||
Sbjct: 604 gctttgttctgcgcgatcttcaggaaacacaagggtggcattatgactgccacaagtata 545

                                                                       
Query: 443 ctgagcagggatccaatcagagccatcaccaaaccgaagaatggaagaagaaatgcaatg 502
           || || || |||||||| |||| |||||| | ||| ||||| || |||||||| ||||||
Sbjct: 544 ctaagaagagatccaatgagagacatcacaagaccaaagaacggcagaagaaaggcaatg 485

                                                                       
Query: 503 acaacagttgatgccacaaggctcgtcctcagtataatagagacaattgtttcgttcaaa 562
              ||||||||||| | ||||   |||||||||||||||| |     ||||||||||| |
Sbjct: 484 catacagttgatgcaagaagggcagtcctcagtataatagcgcatgatgtttcgttcata 425

                                                                       
Query: 563 aatccttcagggcgcaactcttctaaactccgagccaatgggtttaacaacaaggcaaat 622
           || |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 424 aaaccttcaggacgcaactcttctaaactccgagctaatgggtttaacaacaaggcaaat 365

                                                                       
Query: 623 ttggtgaaagggttgataacccgtggtccacagagcaacttttgaggcaaatgactcttt 682
           ||||||||||||||||| | |||||||||| || ||||||| ||||||||| || |  ||
Sbjct: 364 ttggtgaaagggttgatca-ccgtggtccatagtgcaacttctgaggcaaacgaatgctt 306

                                
Query: 683 tggaagattcaaagttatttg 703
           |||||| || ||||| |||||
Sbjct: 305 tggaaggtttaaagtgatttg 285
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  153 bits (77), Expect = 1e-33
 Identities = 128/145 (88%)
 Strand = Plus / Plus

                                                                            
Query: 475      accgaagaatggaagaagaaatgcaatgacaacagttgatgccacaaggctcgtcctcag 534
                |||||| ||||| | |||||| ||||||   || |||||||| ||||||   ||||||||
Sbjct: 33531971 accgaaaaatggcataagaaacgcaatgcacacggttgatgcaacaagggcagtcctcag 33532030

                                                                            
Query: 535      tataatagagacaattgtttcgttcaaaaatccttcagggcgcaactcttctaaactccg 594
                ||||||||||   ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 33532031 tataatagagcagattgtttcgttcaaaaatccttcagggcgcaactcctctaaactccg 33532090

                                         
Query: 595      agccaatgggtttaacaacaaggca 619
                |||||||||||||||||||| ||||
Sbjct: 33532091 agccaatgggtttaacaacagggca 33532115



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 53/61 (86%)
 Strand = Plus / Plus

                                                                            
Query: 643      ccgtggtccacagagcaacttttgaggcaaatgactcttttggaagattcaaagttattt 702
                ||||||||||||| || || || ||||||||||| | ||| |||||||||| ||||||||
Sbjct: 33532364 ccgtggtccacagtgcgaccttggaggcaaatgaatgtttaggaagattcagagttattt 33532423

                 
Query: 703      g 703
                |
Sbjct: 33532424 g 33532424



 Score = 48.1 bits (24), Expect = 0.041
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                        
Query: 432      ccacaagtatactgagcagggatccaatcagagccatcac 471
                ||||||||||||| | ||| |||||||| |||||||||||
Sbjct: 33531192 ccacaagtatactcaacagagatccaataagagccatcac 33531231



 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 623      ttggtgaaagggttgataacc 643
                |||||||||||||||||||||
Sbjct: 33532262 ttggtgaaagggttgataacc 33532282



 Score = 40.1 bits (20), Expect = 9.9
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 398      atcttcaagaagcacaaggcgggcattatgac 429
                ||||||||||||||||  || |||||||||||
Sbjct: 33531064 atcttcaagaagcacagtgcaggcattatgac 33531095
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>dbj|AP005535.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0054K20
          Length = 153584

 Score =  153 bits (77), Expect = 1e-33
 Identities = 128/145 (88%)
 Strand = Plus / Plus

                                                                          
Query: 475    accgaagaatggaagaagaaatgcaatgacaacagttgatgccacaaggctcgtcctcag 534
              |||||| ||||| | |||||| ||||||   || |||||||| ||||||   ||||||||
Sbjct: 106846 accgaaaaatggcataagaaacgcaatgcacacggttgatgcaacaagggcagtcctcag 106905

                                                                          
Query: 535    tataatagagacaattgtttcgttcaaaaatccttcagggcgcaactcttctaaactccg 594
              ||||||||||   ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 106906 tataatagagcagattgtttcgttcaaaaatccttcagggcgcaactcctctaaactccg 106965

                                       
Query: 595    agccaatgggtttaacaacaaggca 619
              |||||||||||||||||||| ||||
Sbjct: 106966 agccaatgggtttaacaacagggca 106990



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 53/61 (86%)
 Strand = Plus / Plus

                                                                          
Query: 643    ccgtggtccacagagcaacttttgaggcaaatgactcttttggaagattcaaagttattt 702
              ||||||||||||| || || || ||||||||||| | ||| |||||||||| ||||||||
Sbjct: 107239 ccgtggtccacagtgcgaccttggaggcaaatgaatgtttaggaagattcagagttattt 107298

               
Query: 703    g 703
              |
Sbjct: 107299 g 107299



 Score = 48.1 bits (24), Expect = 0.041
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                      
Query: 432    ccacaagtatactgagcagggatccaatcagagccatcac 471
              ||||||||||||| | ||| |||||||| |||||||||||
Sbjct: 106067 ccacaagtatactcaacagagatccaataagagccatcac 106106



 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 623    ttggtgaaagggttgataacc 643
              |||||||||||||||||||||
Sbjct: 107137 ttggtgaaagggttgataacc 107157



 Score = 40.1 bits (20), Expect = 9.9
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 398    atcttcaagaagcacaaggcgggcattatgac 429
              ||||||||||||||||  || |||||||||||
Sbjct: 105939 atcttcaagaagcacagtgcaggcattatgac 105970
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>dbj|AP003984.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1046_F07
          Length = 114184

 Score =  153 bits (77), Expect = 1e-33
 Identities = 128/145 (88%)
 Strand = Plus / Plus

                                                                        
Query: 475  accgaagaatggaagaagaaatgcaatgacaacagttgatgccacaaggctcgtcctcag 534
            |||||| ||||| | |||||| ||||||   || |||||||| ||||||   ||||||||
Sbjct: 2642 accgaaaaatggcataagaaacgcaatgcacacggttgatgcaacaagggcagtcctcag 2701

                                                                        
Query: 535  tataatagagacaattgtttcgttcaaaaatccttcagggcgcaactcttctaaactccg 594
            ||||||||||   ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 2702 tataatagagcagattgtttcgttcaaaaatccttcagggcgcaactcctctaaactccg 2761

                                     
Query: 595  agccaatgggtttaacaacaaggca 619
            |||||||||||||||||||| ||||
Sbjct: 2762 agccaatgggtttaacaacagggca 2786



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 53/61 (86%)
 Strand = Plus / Plus

                                                                        
Query: 643  ccgtggtccacagagcaacttttgaggcaaatgactcttttggaagattcaaagttattt 702
            ||||||||||||| || || || ||||||||||| | ||| |||||||||| ||||||||
Sbjct: 3035 ccgtggtccacagtgcgaccttggaggcaaatgaatgtttaggaagattcagagttattt 3094

             
Query: 703  g 703
            |
Sbjct: 3095 g 3095



 Score = 48.1 bits (24), Expect = 0.041
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                    
Query: 432  ccacaagtatactgagcagggatccaatcagagccatcac 471
            ||||||||||||| | ||| |||||||| |||||||||||
Sbjct: 1863 ccacaagtatactcaacagagatccaataagagccatcac 1902



 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 623  ttggtgaaagggttgataacc 643
            |||||||||||||||||||||
Sbjct: 2933 ttggtgaaagggttgataacc 2953



 Score = 40.1 bits (20), Expect = 9.9
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 398  atcttcaagaagcacaaggcgggcattatgac 429
            ||||||||||||||||  || |||||||||||
Sbjct: 1735 atcttcaagaagcacagtgcaggcattatgac 1766
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>ref|NM_129684.2| Arabidopsis thaliana amino acid permease AT2G41190 mRNA, complete cds
          Length = 2155

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                        
Query: 406  gaagcacaaggcgggcattatgacagccacaagtatactgagcagggatccaatcagagc 465
            |||||| || || |||||||| |  ||||| ||||||||||| || ||||| || |||||
Sbjct: 1741 gaagcataaagctggcattattattgccactagtatactgagaagagatcctataagagc 1682

                 
Query: 466  catca 470
            |||||
Sbjct: 1681 catca 1677
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>gb|AC120348.9| Mus musculus chromosome 5, clone RP23-55P22, complete sequence
          Length = 244565

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 535    tataatagagacaattgtttc 555
              |||||||||||||||||||||
Sbjct: 122536 tataatagagacaattgtttc 122556
to top
>gb|AF487277.1| Lecanicillium muscarium, complete genome
          Length = 24499

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 456   caatcagagccatcaccaaac 476
             |||||||||||||||||||||
Sbjct: 20118 caatcagagccatcaccaaac 20098
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>ref|XM_816496.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053506925.450) partial mRNA
          Length = 2046

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 378 gtgtggctttattctgtgcgatctt 402
           |||||| ||||||||||||||||||
Sbjct: 155 gtgtggttttattctgtgcgatctt 179
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>gb|AC019028.13| Mus musculus chromosome 5, clone RP23-88A22, complete sequence
          Length = 264425

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 535    tataatagagacaattgtttc 555
              |||||||||||||||||||||
Sbjct: 230346 tataatagagacaattgtttc 230326
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>gb|BT000792.1| Arabidopsis thaliana clone RAFL05-20-J01 (R10342) unknown protein
            (At2g41190) mRNA, partial cds
          Length = 1329

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                        
Query: 406  gaagcacaaggcgggcattatgacagccacaagtatactgagcagggatccaatcagagc 465
            |||||| || || |||||||| |  ||||| ||||||||||| || ||||| || |||||
Sbjct: 1094 gaagcataaagctggcattattattgccactagtatactgagaagagatcctataagagc 1035

                 
Query: 466  catca 470
            |||||
Sbjct: 1034 catca 1030
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>gb|AY079364.1| Arabidopsis thaliana unknown protein (At2g41190) mRNA, complete cds
          Length = 1642

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                        
Query: 406  gaagcacaaggcgggcattatgacagccacaagtatactgagcagggatccaatcagagc 465
            |||||| || || |||||||| |  ||||| ||||||||||| || ||||| || |||||
Sbjct: 1479 gaagcataaagctggcattattattgccactagtatactgagaagagatcctataagagc 1420

                 
Query: 466  catca 470
            |||||
Sbjct: 1419 catca 1415
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>gb|AY039978.1| Arabidopsis thaliana unknown protein (At2g41190) mRNA, complete cds
          Length = 2030

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                        
Query: 406  gaagcacaaggcgggcattatgacagccacaagtatactgagcagggatccaatcagagc 465
            |||||| || || |||||||| |  ||||| ||||||||||| || ||||| || |||||
Sbjct: 1741 gaagcataaagctggcattattattgccactagtatactgagaagagatcctataagagc 1682

                 
Query: 466  catca 470
            |||||
Sbjct: 1681 catca 1677
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>emb|X55026.1|MTPACG Podospora anserina complete mitochondrial genome
          Length = 100314

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 456   caatcagagccatcaccaaac 476
             |||||||||||||||||||||
Sbjct: 15747 caatcagagccatcaccaaac 15727
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>gb|AY945289.1| Fusarium oxysporum strain F11 mitochondrion, complete genome
          Length = 34477

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 456   caatcagagccatcaccaaac 476
             |||||||||||||||||||||
Sbjct: 28217 caatcagagccatcaccaaac 28197
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>emb|X13337.1|MINCND2D Neurospora crassa mitochondrial DNA with duplications of tRNA-Met,
            tRNA-Cys and ND2 fragments (NADH dehydrogenase complex
            subunit)
          Length = 3884

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 456  caatcagagccatcaccaaac 476
            |||||||||||||||||||||
Sbjct: 3390 caatcagagccatcaccaaac 3370
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>gb|AF447590.1| Hypocrea jecorina mitochondrion, complete genome
          Length = 42130

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 456  caatcagagccatcaccaaac 476
            |||||||||||||||||||||
Sbjct: 4820 caatcagagccatcaccaaac 4800
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>gb|AC153774.3| Loxodonta africana clone VMRC15-554J14, complete sequence
          Length = 136822

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 605   tttaacaacaaggcaaatttg 625
             |||||||||||||||||||||
Sbjct: 73990 tttaacaacaaggcaaatttg 74010
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>gb|AY548158.1| Neurospora intermedia isolate M1991-60 tRNA-Met gene, partial
            sequence; UrfLM gene, complete cds; tRNA-Cys gene,
            complete sequence; disrupted small subunit ribosomal RNA
            gene, partial sequence; and integrated plasmid pMADDUR1
            reverse transcriptase gene, partial cds; mitochondrial
          Length = 6030

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 456  caatcagagccatcaccaaac 476
            |||||||||||||||||||||
Sbjct: 3375 caatcagagccatcaccaaac 3355
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>emb|Z34001.1|NCMT19SRR N.crassa (74-OR23-1A (FGSC #2489)) mitochondrial gene for 19S
           ribosomal RNA and transfer RNA-Tyr
          Length = 2071

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 456 caatcagagccatcaccaaac 476
           |||||||||||||||||||||
Sbjct: 76  caatcagagccatcaccaaac 56
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>gb|AY874423.1| Fusarium oxysporum voucher VPRI 19292 mitochondrion, partial genome
          Length = 33396

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 456   caatcagagccatcaccaaac 476
             |||||||||||||||||||||
Sbjct: 21885 caatcagagccatcaccaaac 21865
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>gb|AF029891.1|AF029891 Cryphonectria parasitica small subunit ribosomal RNA gene, complete
            sequence; including introns with putative maturase
            (mtSrRNA I1), (mtSrRNA I2), (mtSrRNA I3), and (mtSrRNA
            I4) genes, complete cds, mitochondrial genes for
            mitochondrial products
          Length = 11565

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 456  caatcagagccatcaccaaac 476
            |||||||||||||||||||||
Sbjct: 1551 caatcagagccatcaccaaac 1531
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>emb|X14734.1|MIPASMRR Podospora anserina mtDNA for small subunit rRNA
          Length = 3981

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 456 caatcagagccatcaccaaac 476
           |||||||||||||||||||||
Sbjct: 612 caatcagagccatcaccaaac 592
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>emb|Z69896.1|MTPCSSURR P.curvicolla mitochondrial small subunit rRNA gene (partial)
          Length = 249

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 456 caatcagagccatcaccaaac 476
           |||||||||||||||||||||
Sbjct: 172 caatcagagccatcaccaaac 152
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>gb|L33367.1|NEU19RRTR Neurospora crassa (clone p19StyrB1) mitochondrial 19S ribosomal RNA
           gene and transfer RNA-Tyr gene, complete
          Length = 2071

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 456 caatcagagccatcaccaaac 476
           |||||||||||||||||||||
Sbjct: 76  caatcagagccatcaccaaac 56
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>gb|J05254.1|NEUMTRG N.crassa mitochondrial small (19S) rRNA and Cys-tRNA
          Length = 2146

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 456  caatcagagccatcaccaaac 476
            |||||||||||||||||||||
Sbjct: 1343 caatcagagccatcaccaaac 1323
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>gb|AC119932.7| Mus musculus chromosome 15, clone RP24-260C11, complete sequence
          Length = 170117

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 457  aatcagagccatcaccaaac 476
            ||||||||||||||||||||
Sbjct: 8884 aatcagagccatcaccaaac 8865
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>gb|AC146338.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0093C16,
              complete sequence
          Length = 206612

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 610    caacaaggcaaatttggtga 629
              ||||||||||||||||||||
Sbjct: 112736 caacaaggcaaatttggtga 112717
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>gb|AC145272.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
            OSJNBa0002L02, complete sequence
          Length = 165685

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 610  caacaaggcaaatttggtga 629
            ||||||||||||||||||||
Sbjct: 4875 caacaaggcaaatttggtga 4856
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>ref|NM_175526.1| Mus musculus C-type lectin domain family 1, member a (Clec1a), mRNA
          Length = 3084

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 478  gaagaatggaagaagaaatg 497
            ||||||||||||||||||||
Sbjct: 1493 gaagaatggaagaagaaatg 1512
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>gb|AC140313.2| Mus musculus BAC clone RP24-324C6 from chromosome 15, complete sequence
          Length = 215861

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 457   aatcagagccatcaccaaac 476
             ||||||||||||||||||||
Sbjct: 37388 aatcagagccatcaccaaac 37407
to top
>gb|AC098734.3| Mus musculus BAC clone RP23-121L4 from 14, complete sequence
          Length = 196797

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 476    ccgaagaatggaagaagaaa 495
              ||||||||||||||||||||
Sbjct: 183092 ccgaagaatggaagaagaaa 183111
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>gb|AC105403.2| Mus musculus BAC clone RP24-111L5 from 3, complete sequence
          Length = 141439

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 647   ggtccacagagcaacttttg 666
             ||||||||||||||||||||
Sbjct: 85845 ggtccacagagcaacttttg 85864
to top
>ref|XM_662925.1| Cryptosporidium hominis TU502 hypothetical protein (Chro.10327)
           partial mRNA
          Length = 777

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 685 gaagattcaaagttatttgg 704
           ||||||||||||||||||||
Sbjct: 258 gaagattcaaagttatttgg 277
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>gb|AC114559.8| Mus musculus, clone RP23-50G21, complete sequence
          Length = 173404

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 476   ccgaagaatggaagaagaaa 495
             ||||||||||||||||||||
Sbjct: 89326 ccgaagaatggaagaagaaa 89345
to top
>emb|CR538741.13| Zebrafish DNA sequence from clone DKEY-97J15 in linkage group 5,
             complete sequence
          Length = 122930

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 95    atgatatagcagcagctaaa 114
             ||||||||||||||||||||
Sbjct: 17268 atgatatagcagcagctaaa 17249
to top
>gb|AC161602.4| Mus musculus BAC clone RP23-336I5 from chromosome 6, complete sequence
          Length = 224158

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 478    gaagaatggaagaagaaatg 497
              ||||||||||||||||||||
Sbjct: 165505 gaagaatggaagaagaaatg 165524
to top
>gb|AC021010.8| Homo sapiens, clone RP11-69D2, complete sequence
          Length = 187599

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 680   ttttggaagattcaaagtta 699
             ||||||||||||||||||||
Sbjct: 95247 ttttggaagattcaaagtta 95228
to top
>gb|AE014173.1| Mus musculus piebald deletion region section 1 of 11 of the complete
              sequence
          Length = 400029

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 476    ccgaagaatggaagaagaaa 495
              ||||||||||||||||||||
Sbjct: 275960 ccgaagaatggaagaagaaa 275941
to top
>gb|AC023934.6| Homo sapiens chromosome 17, clone RP11-618P13, complete sequence
          Length = 157069

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 680    ttttggaagattcaaagtta 699
              ||||||||||||||||||||
Sbjct: 141341 ttttggaagattcaaagtta 141322
to top
>gb|AC024681.12| Homo sapiens chromosome 8, clone RP11-622O11, complete sequence
          Length = 194516

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 681    tttggaagattcaaagttatttgg 704
              ||||||| ||||||||||||||||
Sbjct: 156672 tttggaaaattcaaagttatttgg 156649
to top
>gb|AC080021.3| Genomic sequence for Mus musculus, clone RP23-422L7, complete sequence
          Length = 200065

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 476    ccgaagaatggaagaagaaa 495
              ||||||||||||||||||||
Sbjct: 185546 ccgaagaatggaagaagaaa 185527
to top
>dbj|AK031121.1| Mus musculus 13 days embryo forelimb cDNA, RIKEN full-length enriched
            library, clone:5930406N14 product:weakly similar to
            C-TYPE LECTIN-LIKE RECEPTOR-1 [Homo sapiens], full insert
            sequence
          Length = 3084

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 478  gaagaatggaagaagaaatg 497
            ||||||||||||||||||||
Sbjct: 1493 gaagaatggaagaagaaatg 1512
to top
>dbj|AK036846.1| Mus musculus adult female vagina cDNA, RIKEN full-length enriched
            library, clone:9930017N20 product:weakly similar to
            C-TYPE LECTIN-LIKE RECEPTOR-1 [Homo sapiens], full insert
            sequence
          Length = 4988

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 478  gaagaatggaagaagaaatg 497
            ||||||||||||||||||||
Sbjct: 1477 gaagaatggaagaagaaatg 1496
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 610     caacaaggcaaatttggtga 629
               ||||||||||||||||||||
Sbjct: 9882109 caacaaggcaaatttggtga 9882090
to top
>gb|AC104031.6| Homo sapiens chromosome 11, clone RP11-483L5, complete sequence
          Length = 212779

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 663   tttgaggcaaatgactcttt 682
             ||||||||||||||||||||
Sbjct: 50317 tttgaggcaaatgactcttt 50336
to top
>gb|AC106901.4| Homo sapiens BAC clone RP11-1178E6 from 2, complete sequence
          Length = 91323

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 60    gatgcagtctttataaatcg 79
             ||||||||||||||||||||
Sbjct: 14411 gatgcagtctttataaatcg 14430
to top
>gb|AC009496.3| Homo sapiens BAC clone RP11-500G18 from 2, complete sequence
          Length = 96843

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 290   attatgctggccacagagga 309
             ||||||||||||||||||||
Sbjct: 46866 attatgctggccacagagga 46847
to top
>dbj|BA000001.2| Pyrococcus horikoshii OT3 DNA, complete genome
          Length = 1738505

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 478    gaagaatggaagaagaaatg 497
              ||||||||||||||||||||
Sbjct: 143314 gaagaatggaagaagaaatg 143333
to top
>emb|BX005181.5| Mouse DNA sequence from clone RP24-364O14 on chromosome 2, complete
             sequence
          Length = 118597

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 669   gcaaatgactcttttggaag 688
             ||||||||||||||||||||
Sbjct: 50026 gcaaatgactcttttggaag 50045
to top
>gb|AC138620.4| Mus musculus BAC clone RP23-250E1 from 6, complete sequence
          Length = 209846

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 478    gaagaatggaagaagaaatg 497
              ||||||||||||||||||||
Sbjct: 159037 gaagaatggaagaagaaatg 159018


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,566,856
Number of Sequences: 3902068
Number of extensions: 5566856
Number of successful extensions: 99244
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 99036
Number of HSP's gapped (non-prelim): 203
length of query: 722
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 699
effective length of database: 17,143,297,704
effective search space: 11983165095096
effective search space used: 11983165095096
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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