ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal13b09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence 504 e-139
2dbj|AK071884.1| Oryza sativa (japonica cultivar-group) cDNA clon... 107 4e-20
3gb|AC069158.6| Genomic Sequence for Oryza sativa, Nipponbare str... 88 3e-14
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 88 3e-14
5dbj|AP004240.3| Oryza sativa (japonica cultivar-group) genomic D... 88 3e-14
6ref|NM_188205.1| Oryza sativa (japonica cultivar-group), mRNA 78 3e-11
7dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 78 3e-11
8dbj|AP005168.3| Oryza sativa (japonica cultivar-group) genomic D... 78 3e-11
9dbj|AP004264.4| Oryza sativa (japonica cultivar-group) genomic D... 78 3e-11
10dbj|AK120134.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 3e-11
11dbj|AP004336.2| Oryza sativa (japonica cultivar-group) genomic D... 78 3e-11
12ref|NM_102238.2| Arabidopsis thaliana GAMMA-ADAPTIN 1 (GAMMA-ADA... 56 1e-04
13ref|NM_179370.2| Arabidopsis thaliana GAMMA-ADAPTIN 1 (GAMMA-ADA... 56 1e-04
14emb|AJ133777.1|ATH133777 Arabidopsis thaliana mRNA for gamma-ada... 56 1e-04
15gb|BT005557.1| Arabidopsis thaliana clone U50014 putative gamma-... 56 1e-04
16gb|BT004307.1| Arabidopsis thaliana clone RAFL16-01-N23 (R50014)... 56 1e-04
17gb|AF124524.1|AF124524 Arabidopsis thaliana gamma-adaptin 1 gene... 56 1e-04
18gb|AF061286.1|AF061286 Arabidopsis thaliana gamma-adaptin 1 mRNA... 56 1e-04
19ref|XM_550363.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.008
20dbj|AK101686.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.008
21gb|AC002423.3|AC002423 Genomic sequence for Arabidopsis thaliana... 44 0.47
22emb|BX072532.7| Zebrafish DNA sequence from clone CH211-10B9 in ... 44 0.47
23gb|AC167537.7| Mus musculus chromosome 8, clone RP23-99B10, comp... 42 1.8
24gb|AC166782.4| Mus musculus chromosome 8, clone wi1-146O13, comp... 42 1.8
25ref|XM_658361.1| Aspergillus nidulans FGSC A4 hypothetical prote... 42 1.8
26gb|AY387697.1| Caenorhabditis elegans SOL-1 (sol-1) mRNA, comple... 42 1.8
27emb|Z79694.1|CEC15A11 Caenorhabditis elegans Cosmid C15A11, comp... 42 1.8
28ref|NM_059687.4| Caenorhabditis elegans Suppressor Of Lurcher mo... 42 1.8
29gb|AC008282.4| Homo sapiens BAC clone RP11-516B14 from 2, comple... 42 1.8
30gb|AC068943.4| Homo sapiens BAC clone RP11-769M2 from 2, complet... 42 1.8
31emb|BX470164.10| Zebrafish DNA sequence from clone DKEY-24L11 in... 42 1.8
32emb|CT009564.11| Mouse DNA sequence from clone RP23-16F13 on chr... 42 1.8
33emb|CR385047.19| Zebrafish DNA sequence from clone DKEY-221N16 i... 42 1.8
34gb|AE008590.1| Rickettsia conorii str. Malish 7, section 22 of 1... 40 7.3
35gb|AC102217.9| Mus musculus chromosome 1, clone RP24-160A23, com... 40 7.3
36gb|AC140375.2| Mus musculus BAC clone RP23-183J2 from chromosome... 40 7.3
37ref|XM_860637.1| PREDICTED: Canis familiaris similar to choline/... 40 7.3
38ref|XM_860622.1| PREDICTED: Canis familiaris similar to choline/... 40 7.3
39ref|XM_860607.1| PREDICTED: Canis familiaris similar to choline/... 40 7.3
40ref|XM_847331.1| PREDICTED: Canis familiaris similar to choline/... 40 7.3
41ref|XM_644429.1| Entamoeba histolytica HM-1:IMSS exonuclease (29... 40 7.3
42gb|CP000053.1| Rickettsia felis URRWXCal2, complete genome 40 7.3
43gb|AC137552.11| Medicago truncatula clone mth2-9k5, complete seq... 40 7.3
44gb|AC112083.7| Rattus norvegicus BAC CH230-288C21 (Children's H... 40 7.3
45dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
46ref|XM_395220.2| PREDICTED: Apis mellifera similar to ENSANGP000... 40 7.3
47gb|AC157363.6| Mus musculus chromosome 1, clone RP23-478L14, com... 40 7.3
48gb|AC009960.10| Homo sapiens BAC clone RP11-354N12 from 2, compl... 40 7.3
49dbj|AB023482.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
50gb|AC155945.4| Mus musculus 6 BAC RP24-466A6 (Roswell Park Cance... 40 7.3
51gb|AC140349.4| Mus musculus BAC clone RP24-250I16 from 12, compl... 40 7.3
52gb|AC142263.3| Mus musculus BAC clone RP24-449M10 from 12, compl... 40 7.3 
>gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence
          Length = 261265

 Score =  504 bits (254), Expect = e-139
 Identities = 284/294 (96%)
 Strand = Plus / Plus

                                                                          
Query: 1      acatacattgaacgcaagttgacaaacaaattaacctagaggaagcatacttttgaccat 60
              |||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct: 135027 acatacgttgaacgcaagttgacaaacaaattaacctagaggaagcatagttttgagcat 135086

                                                                          
Query: 61     cttaacaatcatctagaacacacaagttacaaaaagataaggactattggttactatgag 120
               |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 135087 gttaacaatcatctagaacacacaagtcacaaaaagataaggactattggttactacgag 135146

                                                                          
Query: 121    agacttcagatggtccagaacacacaagtttgtatctacatgcacaaagtgcaagcttcg 180
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | 
Sbjct: 135147 agacttcagatggtccagaacacacaagtttgtatctacatgcacaaagtgcaagctcca 135206

                                                                          
Query: 181    aaacactcgaaacaccaaatggtctacaagacaacaaggtccatgattacaggttggttg 240
              |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 135207 aaacactcgaaacaccaaatggtctacaagacaataaggtccatgattacaggttggttg 135266

                                                                    
Query: 241    gtccataaacgctagagagtcatcatgtccatgtgcatcaataggttgagtacc 294
              ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 135267 gtccataaacgctggagagtcatcatgtccatgtgcatcaataggttgagtacc 135320



 Score =  504 bits (254), Expect = e-139
 Identities = 284/294 (96%)
 Strand = Plus / Plus

                                                                         
Query: 1     acatacattgaacgcaagttgacaaacaaattaacctagaggaagcatacttttgaccat 60
             |||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct: 95314 acatacgttgaacgcaagttgacaaacaaattaacctagaggaagcatagttttgagcat 95373

                                                                         
Query: 61    cttaacaatcatctagaacacacaagttacaaaaagataaggactattggttactatgag 120
              |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 95374 gttaacaatcatctagaacacacaagtcacaaaaagataaggactattggttactacgag 95433

                                                                         
Query: 121   agacttcagatggtccagaacacacaagtttgtatctacatgcacaaagtgcaagcttcg 180
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | 
Sbjct: 95434 agacttcagatggtccagaacacacaagtttgtatctacatgcacaaagtgcaagctcca 95493

                                                                         
Query: 181   aaacactcgaaacaccaaatggtctacaagacaacaaggtccatgattacaggttggttg 240
             |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 95494 aaacactcgaaacaccaaatggtctacaagacaataaggtccatgattacaggttggttg 95553

                                                                   
Query: 241   gtccataaacgctagagagtcatcatgtccatgtgcatcaataggttgagtacc 294
             ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 95554 gtccataaacgctggagagtcatcatgtccatgtgcatcaataggttgagtacc 95607



 Score =  180 bits (91), Expect = 3e-42
 Identities = 94/95 (98%)
 Strand = Plus / Plus

                                                                          
Query: 291    taccggcattcaccccattgatatcctgtgtgagaatgagatcaggcgatgcatcaaaat 350
              ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 136018 taccggcattcaccccattgatatcctctgtgagaatgagatcaggcgatgcatcaaaat 136077

                                                 
Query: 351    cactatgcccaatcaccgagaacaaaatctcttcc 385
              |||||||||||||||||||||||||||||||||||
Sbjct: 136078 cactatgcccaatcaccgagaacaaaatctcttcc 136112



 Score =  180 bits (91), Expect = 3e-42
 Identities = 94/95 (98%)
 Strand = Plus / Plus

                                                                         
Query: 291   taccggcattcaccccattgatatcctgtgtgagaatgagatcaggcgatgcatcaaaat 350
             ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 96305 taccggcattcaccccattgatatcctctgtgagaatgagatcaggcgatgcatcaaaat 96364

                                                
Query: 351   cactatgcccaatcaccgagaacaaaatctcttcc 385
             |||||||||||||||||||||||||||||||||||
Sbjct: 96365 cactatgcccaatcaccgagaacaaaatctcttcc 96399



 Score =  131 bits (66), Expect = 3e-27
 Identities = 75/78 (96%)
 Strand = Plus / Plus

                                                                          
Query: 384    ccaacgaaatgtcagtgttagtaaccagagtataatttgtcttcttctcaaagtgtttct 443
              ||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 136229 ccaacgaaatgtcacggttagtaaccagagtgtaatttgtcttcttctcaaagtgtttct 136288

                                
Query: 444    ttcagcatatgccaactc 461
              ||||||||||||||||||
Sbjct: 136289 ttcagcatatgccaactc 136306



 Score =  131 bits (66), Expect = 3e-27
 Identities = 75/78 (96%)
 Strand = Plus / Plus

                                                                         
Query: 384   ccaacgaaatgtcagtgttagtaaccagagtataatttgtcttcttctcaaagtgtttct 443
             ||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 96516 ccaacgaaatgtcacggttagtaaccagagtgtaatttgtcttcttctcaaagtgtttct 96575

                               
Query: 444   ttcagcatatgccaactc 461
             ||||||||||||||||||
Sbjct: 96576 ttcagcatatgccaactc 96593
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>dbj|AK071884.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013047F12, full
            insert sequence
          Length = 3763

 Score =  107 bits (54), Expect = 4e-20
 Identities = 69/74 (93%)
 Strand = Plus / Minus

                                                                        
Query: 464  ggataaaaccttgaacatctgatcaagataccataacttttcttgagaaaacttttcagc 523
            ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
Sbjct: 1499 ggataaaaccttgaacatctgatcaaggtaccataacttctcttgagaaaacttttcaac 1440

                          
Query: 524  catagagcatatct 537
             || ||||||||||
Sbjct: 1439 tattgagcatatct 1426
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>gb|AC069158.6| Genomic Sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0049O12, from chromosome 2, complete sequence
          Length = 155154

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 50/52 (96%)
 Strand = Plus / Minus

                                                                  
Query: 464    ggataaaaccttgaacatctgatcaagataccataacttttcttgagaaaac 515
              ||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 145983 ggataaaaccttgaacatctgatcaaggtaccataacttctcttgagaaaac 145932
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 50/52 (96%)
 Strand = Plus / Plus

                                                                    
Query: 464      ggataaaaccttgaacatctgatcaagataccataacttttcttgagaaaac 515
                ||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 34359123 ggataaaaccttgaacatctgatcaaggtaccataacttctcttgagaaaac 34359174
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>dbj|AP004240.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1548_F12
          Length = 118814

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 50/52 (96%)
 Strand = Plus / Plus

                                                                 
Query: 464   ggataaaaccttgaacatctgatcaagataccataacttttcttgagaaaac 515
             ||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 56770 ggataaaaccttgaacatctgatcaaggtaccataacttctcttgagaaaac 56821
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>ref|NM_188205.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 633

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 66/75 (88%)
 Strand = Plus / Minus

                                                                       
Query: 305 ccattgatatcctgtgtgagaatgagatcaggcgatgcatcaaaatcactatgcccaatc 364
           ||||||| |||||  || || ||||||||||| |  |||||||||||||| |||||||||
Sbjct: 611 ccattgaaatcctccgtcaggatgagatcaggagcagcatcaaaatcactgtgcccaatc 552

                          
Query: 365 accgagaacaaaatc 379
           |||||||||||||||
Sbjct: 551 accgagaacaaaatc 537
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 66/75 (88%)
 Strand = Plus / Plus

                                                                            
Query: 305      ccattgatatcctgtgtgagaatgagatcaggcgatgcatcaaaatcactatgcccaatc 364
                ||||||| |||||  || || ||||||||||| |  |||||||||||||| |||||||||
Sbjct: 13229181 ccattgaaatcctccgtcaggatgagatcaggagcagcatcaaaatcactgtgcccaatc 13229240

                               
Query: 365      accgagaacaaaatc 379
                |||||||||||||||
Sbjct: 13229241 accgagaacaaaatc 13229255
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>dbj|AP005168.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBa0066B06
          Length = 154025

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 66/75 (88%)
 Strand = Plus / Plus

                                                                          
Query: 305    ccattgatatcctgtgtgagaatgagatcaggcgatgcatcaaaatcactatgcccaatc 364
              ||||||| |||||  || || ||||||||||| |  |||||||||||||| |||||||||
Sbjct: 147508 ccattgaaatcctccgtcaggatgagatcaggagcagcatcaaaatcactgtgcccaatc 147567

                             
Query: 365    accgagaacaaaatc 379
              |||||||||||||||
Sbjct: 147568 accgagaacaaaatc 147582
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>dbj|AP004264.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0025D09
          Length = 142593

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 66/75 (88%)
 Strand = Plus / Plus

                                                                         
Query: 305   ccattgatatcctgtgtgagaatgagatcaggcgatgcatcaaaatcactatgcccaatc 364
             ||||||| |||||  || || ||||||||||| |  |||||||||||||| |||||||||
Sbjct: 17044 ccattgaaatcctccgtcaggatgagatcaggagcagcatcaaaatcactgtgcccaatc 17103

                            
Query: 365   accgagaacaaaatc 379
             |||||||||||||||
Sbjct: 17104 accgagaacaaaatc 17118
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>dbj|AK120134.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013027E07, full
           insert sequence
          Length = 3987

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 66/75 (88%)
 Strand = Plus / Minus

                                                                       
Query: 305 ccattgatatcctgtgtgagaatgagatcaggcgatgcatcaaaatcactatgcccaatc 364
           ||||||| |||||  || || ||||||||||| |  |||||||||||||| |||||||||
Sbjct: 667 ccattgaaatcctccgtcaggatgagatcaggagcagcatcaaaatcactgtgcccaatc 608

                          
Query: 365 accgagaacaaaatc 379
           |||||||||||||||
Sbjct: 607 accgagaacaaaatc 593
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>dbj|AP004336.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0498D08, complete sequence
          Length = 53801

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 66/75 (88%)
 Strand = Plus / Plus

                                                                         
Query: 305   ccattgatatcctgtgtgagaatgagatcaggcgatgcatcaaaatcactatgcccaatc 364
             ||||||| |||||  || || ||||||||||| |  |||||||||||||| |||||||||
Sbjct: 45503 ccattgaaatcctccgtcaggatgagatcaggagcagcatcaaaatcactgtgcccaatc 45562

                            
Query: 365   accgagaacaaaatc 379
             |||||||||||||||
Sbjct: 45563 accgagaacaaaatc 45577
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>ref|NM_102238.2| Arabidopsis thaliana GAMMA-ADAPTIN 1 (GAMMA-ADAPTIN 1); clathrin
            binding AT1G23900 (GAMMA-ADAPTIN 1) transcript variant
            AT1G23900.1 mRNA, complete cds
          Length = 3141

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                
Query: 470  aaccttgaacatctgatcaagataccataacttttcttgagaaaacttttca 521
            |||||||| |||||||||||  |||||||  |||||| ||||||||||||||
Sbjct: 1430 aaccttgagcatctgatcaatgtaccatagtttttctggagaaaacttttca 1379
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>ref|NM_179370.2| Arabidopsis thaliana GAMMA-ADAPTIN 1 (GAMMA-ADAPTIN 1); clathrin
            binding AT1G23900 (GAMMA-ADAPTIN 1) transcript variant
            AT1G23900.2 mRNA, complete cds
          Length = 3211

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                
Query: 470  aaccttgaacatctgatcaagataccataacttttcttgagaaaacttttca 521
            |||||||| |||||||||||  |||||||  |||||| ||||||||||||||
Sbjct: 1500 aaccttgagcatctgatcaatgtaccatagtttttctggagaaaacttttca 1449
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>emb|AJ133777.1|ATH133777 Arabidopsis thaliana mRNA for gamma-adaptin 2
          Length = 3100

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                
Query: 470  aaccttgaacatctgatcaagataccataacttttcttgagaaaacttttca 521
            |||||||| |||||||||||  |||||||  |||||| ||||||||||||||
Sbjct: 1422 aaccttgagcatctgatcaatgtaccatagtttttctggagaaaacttttca 1371
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>gb|BT005557.1| Arabidopsis thaliana clone U50014 putative gamma-adaptin (At1g23900)
            mRNA, complete cds
          Length = 2662

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                
Query: 470  aaccttgaacatctgatcaagataccataacttttcttgagaaaacttttca 521
            |||||||| |||||||||||  |||||||  |||||| ||||||||||||||
Sbjct: 1287 aaccttgagcatctgatcaatgtaccatagtttttctggagaaaacttttca 1236
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>gb|BT004307.1| Arabidopsis thaliana clone RAFL16-01-N23 (R50014) putative
            gamma-adaptin (At1g23900) mRNA, complete cds
          Length = 3236

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                
Query: 470  aaccttgaacatctgatcaagataccataacttttcttgagaaaacttttca 521
            |||||||| |||||||||||  |||||||  |||||| ||||||||||||||
Sbjct: 1503 aaccttgagcatctgatcaatgtaccatagtttttctggagaaaacttttca 1452
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>gb|AF124524.1|AF124524 Arabidopsis thaliana gamma-adaptin 1 gene, complete cds
          Length = 7510

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                
Query: 470  aaccttgaacatctgatcaagataccataacttttcttgagaaaacttttca 521
            |||||||| |||||||||||  |||||||  |||||| ||||||||||||||
Sbjct: 3801 aaccttgagcatctgatcaatgtaccatagtttttctggagaaaacttttca 3750
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>gb|AF061286.1|AF061286 Arabidopsis thaliana gamma-adaptin 1 mRNA, complete cds
          Length = 3213

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                                
Query: 470  aaccttgaacatctgatcaagataccataacttttcttgagaaaacttttca 521
            |||||||| |||||||||||  |||||||  |||||| ||||||||||||||
Sbjct: 1437 aaccttgagcatctgatcaatgtaccatagtttttctggagaaaacttttca 1386
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>ref|XM_550363.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3082

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 61/73 (83%)
 Strand = Plus / Minus

                                                                        
Query: 465  gataaaaccttgaacatctgatcaagataccataacttttcttgagaaaacttttcagcc 524
            |||||||||||||||||||| || |  ||||| |  || ||||| |||||||||||| | 
Sbjct: 1493 gataaaaccttgaacatctggtctaagtaccaaagtttatcttgggaaaacttttcaaca 1434

                         
Query: 525  atagagcatatct 537
            || ||||||||||
Sbjct: 1433 attgagcatatct 1421
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>dbj|AK101686.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033058P13, full
            insert sequence
          Length = 3082

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 61/73 (83%)
 Strand = Plus / Minus

                                                                        
Query: 465  gataaaaccttgaacatctgatcaagataccataacttttcttgagaaaacttttcagcc 524
            |||||||||||||||||||| || |  ||||| |  || ||||| |||||||||||| | 
Sbjct: 1493 gataaaaccttgaacatctggtctaagtaccaaagtttatcttgggaaaacttttcaaca 1434

                         
Query: 525  atagagcatatct 537
            || ||||||||||
Sbjct: 1433 attgagcatatct 1421
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>gb|AC002423.3|AC002423 Genomic sequence for Arabidopsis thaliana BAC T23E23, complete sequence
          Length = 99254

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                           
Query: 470   aaccttgaacatctgatcaagataccataacttttcttgagaaaac 515
             |||||||| |||||||||||  |||||||  |||||| ||||||||
Sbjct: 19032 aaccttgagcatctgatcaatgtaccatagtttttctggagaaaac 18987
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>emb|BX072532.7| Zebrafish DNA sequence from clone CH211-10B9 in linkage group 12,
             complete sequence
          Length = 160268

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 427   cttctcaaagtgtttctttcag 448
             ||||||||||||||||||||||
Sbjct: 29212 cttctcaaagtgtttctttcag 29233
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>gb|AC167537.7| Mus musculus chromosome 8, clone RP23-99B10, complete sequence
          Length = 201791

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 437   tgtttctttcagcatatgcca 457
             |||||||||||||||||||||
Sbjct: 74908 tgtttctttcagcatatgcca 74888
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>gb|AC166782.4| Mus musculus chromosome 8, clone wi1-146O13, complete sequence
          Length = 37508

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 437   tgtttctttcagcatatgcca 457
             |||||||||||||||||||||
Sbjct: 19995 tgtttctttcagcatatgcca 19975
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>ref|XM_658361.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN5849.2), mRNA
          Length = 3174

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 471 accttgaacatctgatcaaga 491
           |||||||||||||||||||||
Sbjct: 944 accttgaacatctgatcaaga 924
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>gb|AY387697.1| Caenorhabditis elegans SOL-1 (sol-1) mRNA, complete cds
          Length = 1785

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 377 atctcttccaacgaaatgtca 397
           |||||||||||||||||||||
Sbjct: 933 atctcttccaacgaaatgtca 953
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>emb|Z79694.1|CEC15A11 Caenorhabditis elegans Cosmid C15A11, complete sequence
          Length = 41954

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 377  atctcttccaacgaaatgtca 397
            |||||||||||||||||||||
Sbjct: 9184 atctcttccaacgaaatgtca 9164
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>ref|NM_059687.4| Caenorhabditis elegans Suppressor Of Lurcher movement defect family
           member (sol-1) (sol-1) mRNA, complete cds
          Length = 1838

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 377 atctcttccaacgaaatgtca 397
           |||||||||||||||||||||
Sbjct: 968 atctcttccaacgaaatgtca 988
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>gb|AC008282.4| Homo sapiens BAC clone RP11-516B14 from 2, complete sequence
          Length = 203241

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 151   tgtatctacatgcacaaagtg 171
             |||||||||||||||||||||
Sbjct: 83660 tgtatctacatgcacaaagtg 83680
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>gb|AC068943.4| Homo sapiens BAC clone RP11-769M2 from 2, complete sequence
          Length = 72719

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 418   atttgtcttcttctcaaagtg 438
             |||||||||||||||||||||
Sbjct: 49402 atttgtcttcttctcaaagtg 49382
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>emb|BX470164.10| Zebrafish DNA sequence from clone DKEY-24L11 in linkage group 18,
              complete sequence
          Length = 248419

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 177    ttcgaaacactcgaaacacca 197
              |||||||||||||||||||||
Sbjct: 166894 ttcgaaacactcgaaacacca 166914
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>emb|CT009564.11| Mouse DNA sequence from clone RP23-16F13 on chromosome 17, complete
             sequence
          Length = 157729

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 502   tttcttgagaaaacttttcag 522
             |||||||||||||||||||||
Sbjct: 88910 tttcttgagaaaacttttcag 88890
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>emb|CR385047.19| Zebrafish DNA sequence from clone DKEY-221N16 in linkage group 18,
              complete sequence
          Length = 193827

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 177    ttcgaaacactcgaaacacca 197
              |||||||||||||||||||||
Sbjct: 186470 ttcgaaacactcgaaacacca 186490
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>gb|AE008590.1| Rickettsia conorii str. Malish 7, section 22 of 114 of the complete
            genome
          Length = 12509

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 29   aattaacctagaggaagcat 48
            ||||||||||||||||||||
Sbjct: 8416 aattaacctagaggaagcat 8397
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>gb|AC102217.9| Mus musculus chromosome 1, clone RP24-160A23, complete sequence
          Length = 214578

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 75     agaacacacaagttacaaaa 94
              ||||||||||||||||||||
Sbjct: 118669 agaacacacaagttacaaaa 118688
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>gb|AC140375.2| Mus musculus BAC clone RP23-183J2 from chromosome 19, complete sequence
          Length = 198254

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 80    acacaagttacaaaaagata 99
             ||||||||||||||||||||
Sbjct: 90191 acacaagttacaaaaagata 90172
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>ref|XM_860637.1| PREDICTED: Canis familiaris similar to
            choline/ethanolaminephosphotransferase, transcript
            variant 4 (LOC612948), mRNA
          Length = 2691

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 312  tatcctgtgtgagaatgaga 331
            ||||||||||||||||||||
Sbjct: 1530 tatcctgtgtgagaatgaga 1549
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>ref|XM_860622.1| PREDICTED: Canis familiaris similar to
            choline/ethanolaminephosphotransferase, transcript
            variant 3 (LOC612948), mRNA
          Length = 2595

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 312  tatcctgtgtgagaatgaga 331
            ||||||||||||||||||||
Sbjct: 1434 tatcctgtgtgagaatgaga 1453
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>ref|XM_860607.1| PREDICTED: Canis familiaris similar to
            choline/ethanolaminephosphotransferase, transcript
            variant 2 (LOC612948), mRNA
          Length = 2436

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 312  tatcctgtgtgagaatgaga 331
            ||||||||||||||||||||
Sbjct: 1275 tatcctgtgtgagaatgaga 1294
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>ref|XM_847331.1| PREDICTED: Canis familiaris similar to
            choline/ethanolaminephosphotransferase, transcript
            variant 1 (LOC612948), mRNA
          Length = 2595

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 312  tatcctgtgtgagaatgaga 331
            ||||||||||||||||||||
Sbjct: 1434 tatcctgtgtgagaatgaga 1453
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>ref|XM_644429.1| Entamoeba histolytica HM-1:IMSS exonuclease (293.t00010)  partial
            mRNA
          Length = 1887

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 256  agagtcatcatgtccatgtgcatcaata 283
            |||| |||| ||||||||||||||||||
Sbjct: 1563 agagacatcttgtccatgtgcatcaata 1536
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>gb|CP000053.1| Rickettsia felis URRWXCal2, complete genome
          Length = 1485148

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 29      aattaacctagaggaagcat 48
               ||||||||||||||||||||
Sbjct: 1152626 aattaacctagaggaagcat 1152645
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>gb|AC137552.11| Medicago truncatula clone mth2-9k5, complete sequence
          Length = 122089

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 412   agtataatttgtcttcttct 431
             ||||||||||||||||||||
Sbjct: 31996 agtataatttgtcttcttct 31977
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>gb|AC112083.7| Rattus norvegicus  BAC CH230-288C21 (Children's Hospital Oakland Research
              Institute Rat (BN/SsNHsd/MCW) BAC library) complete
              sequence
          Length = 191137

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 80     acacaagttacaaaaagata 99
              ||||||||||||||||||||
Sbjct: 100403 acacaagttacaaaaagata 100422
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 465     gataaaaccttgaacatctg 484
               ||||||||||||||||||||
Sbjct: 3380841 gataaaaccttgaacatctg 3380822
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>ref|XM_395220.2| PREDICTED: Apis mellifera similar to ENSANGP00000006622
           (LOC411753), mRNA
          Length = 2904

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 105 tattggttactatgagagac 124
           ||||||||||||||||||||
Sbjct: 944 tattggttactatgagagac 963
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>gb|AC157363.6| Mus musculus chromosome 1, clone RP23-478L14, complete sequence
          Length = 209942

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 75     agaacacacaagttacaaaa 94
              ||||||||||||||||||||
Sbjct: 160183 agaacacacaagttacaaaa 160164
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>gb|AC009960.10| Homo sapiens BAC clone RP11-354N12 from 2, complete sequence
          Length = 207983

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 90     caaaaagataaggactattg 109
              ||||||||||||||||||||
Sbjct: 158928 caaaaagataaggactattg 158909
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>dbj|AB023482.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, clone
             P0680A03
          Length = 156054

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 465   gataaaaccttgaacatctg 484
             ||||||||||||||||||||
Sbjct: 72395 gataaaaccttgaacatctg 72376
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>gb|AC155945.4| Mus musculus 6 BAC RP24-466A6 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 162561

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 496    ataacttttcttgagaaaactttt 519
              |||| |||||||||||||||||||
Sbjct: 110709 ataagttttcttgagaaaactttt 110686
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>gb|AC140349.4| Mus musculus BAC clone RP24-250I16 from 12, complete sequence
          Length = 177344

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 93    aaagataaggactattggttacta 116
             ||||| ||||||||||||||||||
Sbjct: 20258 aaagagaaggactattggttacta 20235
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>gb|AC142263.3| Mus musculus BAC clone RP24-449M10 from 12, complete sequence
          Length = 182060

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 93     aaagataaggactattggttacta 116
              ||||| ||||||||||||||||||
Sbjct: 153522 aaagagaaggactattggttacta 153499


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,032,045
Number of Sequences: 3902068
Number of extensions: 5032045
Number of successful extensions: 131226
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 131055
Number of HSP's gapped (non-prelim): 167
length of query: 537
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 514
effective length of database: 17,143,297,704
effective search space: 8811655019856
effective search space used: 8811655019856
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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