ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal13b05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SYP1_YEAST (P25623) Suppressor of yeast profilin deletion 32 2.3
2YB79_YEAST (P38138) Putative family 31 glucosidase in FAT2-PBP2 ... 32 2.3
3PSR1_YEAST (Q07800) Phosphatase PSR1 (EC 3.1.3.-) (Plasma membra... 30 5.2
4ZCHC6_MOUSE (Q5BLK4) Zinc finger CCHC domain-containing protein 6 30 8.8

>SYP1_YEAST (P25623) Suppressor of yeast profilin deletion|
          Length = 870

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
 Frame = -3

Query: 659 PSSASPTRSVRAYAKADEEEGEKKVP----KQSLFGNITEALDFSQVRSEKDAELLYEAR 492
           P+SA+  R V     A   E EKK P    ++S FGNI   L  +      +  +  E  
Sbjct: 265 PASATGARPVSVSNGAANTEREKKSPQKDKRKSAFGNIGHRLASASSSLTHNDLMNNEFS 324

Query: 491 DSIKDEGRMTREQYAALRRKIGGTY 417
           DS  +    +++    LR K+G  +
Sbjct: 325 DSTNNSSLKSKKSSHTLRSKVGSIF 349



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>YB79_YEAST (P38138) Putative family 31 glucosidase in FAT2-PBP2 intergenic|
           region (EC 3.2.1.-)
          Length = 954

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 74  IYLECAYMLIKKYFTWTTHYYPDTLRL 154
           I+L+  Y   KKYFTW  H +P+  RL
Sbjct: 422 IWLDLEYTNDKKYFTWKQHSFPNPKRL 448



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>PSR1_YEAST (Q07800) Phosphatase PSR1 (EC 3.1.3.-) (Plasma membrane sodium|
           response protein 1)
          Length = 427

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
 Frame = -3

Query: 662 KPSSASPTRSVRAYAKADEEEGEKKVPKQSLFGNITEALDFSQVRSE---KDAELLYEAR 492
           K   +SPT +V A    +  + EK++ K  L+    E  +  ++  E   +   ++ E  
Sbjct: 84  KKKPSSPTAAVTATTTNNMTKVEKRISKDDLYEEKYEVDEDEEIDDEDNRRSRGIVQEKG 143

Query: 491 DSIKDEGRMTREQ 453
           D++KD  R  ++Q
Sbjct: 144 DAVKDTSRQKKQQ 156



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>ZCHC6_MOUSE (Q5BLK4) Zinc finger CCHC domain-containing protein 6|
          Length = 1491

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 7/90 (7%)
 Frame = -3

Query: 668  CFKPSSASPTRSVRAYAKADEEEGEKKVPKQSLFGNITEALDFSQVRSEKDAELLYEA-- 495
            CF PS  S T +   +   +EEE E++  +  L  N+TE  D   V +E   +  Y    
Sbjct: 828  CFSPSVQSRTSAAMHFDDEEEEEEEEEEEEPRLSINLTE--DEEGVANEHQVDSRYAGSG 885

Query: 494  -RDSIKDEGRMTR----EQYAALRRKIGGT 420
              D++ +E  +      E        +GGT
Sbjct: 886  EEDALSEEDDLAEPAKGEDTGECGENVGGT 915


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,752,325
Number of Sequences: 219361
Number of extensions: 1918387
Number of successful extensions: 6466
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6439
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6655306086
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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