ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal13a17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MS84B_DROME (Q01643) Male-specific sperm protein Mst84Db 30 2.1
2MS84C_DROME (Q01644) Male-specific sperm protein Mst84Dc 29 3.6
3MS84D_DROME (Q01645) Male-specific sperm protein Mst84Dd 28 4.6
4DPOE_EMENI (O93845) DNA polymerase epsilon, catalytic subunit A ... 28 4.6
5KRA11_HUMAN (Q07627) Keratin-associated protein 1-1 (Keratin-ass... 28 6.1
6KR414_HUMAN (Q9BYQ6) Keratin-associated protein 4-14 (Keratin-as... 28 7.9

>MS84B_DROME (Q01643) Male-specific sperm protein Mst84Db|
          Length = 74

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 185 CRPCGASPRSCG*CRPWC 238
           C PCG     CG CRP+C
Sbjct: 55  CGPCGPCGPCCGPCRPYC 72



 Score = 28.5 bits (62), Expect = 4.6
 Identities = 11/22 (50%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
 Frame = +2

Query: 182 CCRPCGASPRSCG*CRPW--CC 241
           CC PCG+    CG C P   CC
Sbjct: 31  CCSPCGSCCAPCGPCGPCGPCC 52



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>MS84C_DROME (Q01644) Male-specific sperm protein Mst84Dc|
          Length = 55

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 185 CRPCGASPRSCG*CRPWCCPYFS 253
           C PCG+    CG C P C P+ S
Sbjct: 26  CGPCGSCCGPCGPCGPCCGPFGS 48



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>MS84D_DROME (Q01645) Male-specific sperm protein Mst84Dd|
          Length = 72

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +2

Query: 182 CCRPCGASPRSCG*CRPWC 238
           CC PCG     CG C P C
Sbjct: 39  CCGPCGPRCGPCGPCGPCC 57



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>DPOE_EMENI (O93845) DNA polymerase epsilon, catalytic subunit A (EC 2.7.7.7)|
            (DNA polymerase II subunit A)
          Length = 2207

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 188  RPCGASPRSCG*CRPWCCPY 247
            R  G+ P S    RPWCCP+
Sbjct: 2096 RGSGSGPDSATSSRPWCCPF 2115



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>KRA11_HUMAN (Q07627) Keratin-associated protein 1-1 (Keratin-associated protein|
           1.1) (High sulfur keratin-associated protein 1.1)
           (Keratin-associated protein 1.6) (Keratin-associated
           protein 1.7)
          Length = 177

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 15/26 (57%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = +2

Query: 182 CCRP--CGASPRSCG*CRPWCCPYFS 253
           CCRP  CG   +SC  CRP CC Y S
Sbjct: 153 CCRPSYCG---QSC--CRPVCCCYCS 173



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>KR414_HUMAN (Q9BYQ6) Keratin-associated protein 4-14 (Keratin-associated|
           protein 4.14) (Ultrahigh sulfur keratin-associated
           protein 4.14)
          Length = 195

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 11/22 (50%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
 Frame = +2

Query: 182 CCRPCGASPRSC--G*CRPWCC 241
           CC+P    PR C    CRP CC
Sbjct: 94  CCQPTCCRPRCCISSCCRPSCC 115



 Score = 27.7 bits (60), Expect = 7.9
 Identities = 11/22 (50%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
 Frame = +2

Query: 182 CCRPCGASPRSC--G*CRPWCC 241
           CC+P    PR C    CRP CC
Sbjct: 59  CCQPTCCRPRCCISSCCRPSCC 80


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,969,824
Number of Sequences: 219361
Number of extensions: 124418
Number of successful extensions: 583
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 80,573,946
effective HSP length: 68
effective length of database: 65,657,398
effective search space used: 1575777552
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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