ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal6k16 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009272.1| Triticum aestivum clone wlk8.pk0011.e10:fis, full insert mRNA sequence Length = 1878 Score = 1209 bits (610), Expect = 0.0 Identities = 693/718 (96%), Gaps = 2/718 (0%) Strand = Plus / Minus Query: 27 tatagcatatcagcgaaacatcttacagtatgtgcctgcaataagaaactattgacaaag 86 ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| Sbjct: 1793 tatagcatatcagcgaagcatcttacagtatgtgcctgcaataagaaactatcgacaaag 1734 Query: 87 ttcccatattctgtaaaatgcttggattccttttacataagatggcgcttcatcatggat 146 ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| Sbjct: 1733 ttcccatattctgtaaaatgcttggattccttttacatatggtggcgcttcatcatggat 1674 Query: 147 ctattgtttacatggacttgtcctcagttgtgcttcctgtttgcttcctt-gctgttgaa 205 ||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||| Sbjct: 1673 ctattgtttacatggacttgtcctcagctgtgcttcttgtttgcttcctttgctgttgaa 1614 Query: 206 acacagcagtgcttagttcttgtacttcatggtctctttctcgaatccgattgttgggaa 265 |||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct: 1613 acacagcagttcttagttcttgtacttcatggtctccttctcgaatccaattgttgggaa 1554 Query: 266 ttgttttgcatattcctccacatcgtggcgaagctttgcaatttcagcttggatgttgct 325 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1553 ttgtttcgcatattcctccacatcgtggcgaagctttgcaatttcagcttggatgttgct 1494 Query: 326 gtcggattgcaaagtggcaacaaagtccttcagtttggtacctgctgctgcagctttaac 385 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1493 gtcggattgcaaagtggcaacaaagtccttcagtttggtacctgctgctgcagctttaac 1434 Query: 386 cttcaaagccaagttcactgccgaatcgaagaattcggcaaccttggcgaagtcctcctc 445 |||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct: 1433 cttcaaggccaagttcactgccgaatcgaagaagtcagcaaccttggcgaagtcctcctc 1374 Query: 446 aacaaatcctcttgatgtaagcgcgggggttcccatcctgatgcctccgggtaccatagc 505 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 1373 aacaaatcctcttgatgtaagtgcgggggttcccatcctgatgcctccgggtaccatagc 1314 Query: 506 tgaaacatcaccaggaacagtgttcttgtttgctgcaatatgcacattttctaaaacctt 565 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 1313 tgaaacatcaccaggaaccgtgttcttgtttgctgcaatatgcacattttctaaaacctt 1254 Query: 566 ctccactcttgaaccatctattccctttttcttgaggttcaccaaaactaaatggttatc 625 |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1253 ctccacacgtgaaccatctattccctttttcttgaggttcaccaaaactaaatggttatc 1194 Query: 626 agtcccaccagagacaatgtcgtagcctttggaagtcaaactctcagcaaatctagcaga 685 |||||||||||| ||||| ||||||||||| ||||| || |||||||||||||||||||| Sbjct: 1193 agtcccaccagaaacaatatcgtagccttttgaagttaagctctcagcaaatctagcaga 1134 Query: 686 gttgctcataacttgctcttgataagctcggtactcctggagtagttgcctgcttaag 743 ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| Sbjct: 1133 gttgctcataacttgctcttgataagctctgtactcct-gagtagttgcctgcttaag 1077
>ref|XM_469653.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2052 Score = 609 bits (307), Expect = e-171 Identities = 473/527 (89%), Gaps = 1/527 (0%) Strand = Plus / Minus Query: 217 cttagttcttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcat 276 |||||||||||||||||||||| |||||||| || || ||||| ||||| |||||||||| Sbjct: 1675 cttagttcttgtacttcatggtttctttctcaaacccaattgtggggaactgttttgcat 1616 Query: 277 attcctccacatcgtggcgaagctttgcaatttcagcttggatgttgctgtcggattgca 336 ||||||||||||| |||||||| |||||||| || | ||| |||||||| || ||||||| Sbjct: 1615 attcctccacatcatggcgaagttttgcaatctcggattgaatgttgctatcagattgca 1556 Query: 337 aagtggcaacaaagtccttcagtttggtacctgctgctgcagctttaaccttcaaagcca 396 ||||||||||||||||||||||||| || || |||||||||| |||||||||||||||| Sbjct: 1555 aagtggcaacaaagtccttcagttttgttccacctgctgcagccttaaccttcaaagcca 1496 Query: 397 agttcactgccgaatcgaagaattcggcaaccttggcgaagtcctcctcaacaaatcctc 456 |||||||||| | ||||||||| || |||||||| || |||||||||||||||||||||| Sbjct: 1495 agttcactgctgcatcgaagaaatcagcaaccttagcaaagtcctcctcaacaaatcctc 1436 Query: 457 ttgatgtaagcgcgggggttcccatcctgatgcctccgggtaccatagctgaaacatcac 516 |||| || || || ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 1435 ttgaggtcagtgctggggttcccatcctgatgcctcctggtaccatagctgaaacatcac 1376 Query: 517 caggaacagtgttcttgtttgctgcaatatgcacattttctaaaaccttctccactcttg 576 ||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 1375 caggaactgtgttcttgtttgctgcaatgtgcacgttttctaaaaccttctccactcttg 1316 Query: 577 aaccatctattccctttttcttgaggttcaccaaaactaaatggttatcagtcccaccag 636 |||||||||| ||||| ||||||| || ||||| ||||||||||| ||||||||||||| Sbjct: 1315 aaccatctatgcccttgctcttgagatttaccaacactaaatggttgtcagtcccaccag 1256 Query: 637 agacaatgtcgtagcctttggaagtcaaactctcagcaaatctagcagagttgctcataa 696 |||||| ||||||||||| | ||||| |||| |||||| | ||| |||| ||||||| Sbjct: 1255 agacaagttcgtagccttttgctgtcaagctctgtgcaaattttgcacagttactcataa 1196 Query: 697 cttgctcttgataagctcggtactcctggagtagttgcctgcttaag 743 |||||||||||||||||| ||||||| |||||||||||||||||||| Sbjct: 1195 cttgctcttgataagctctgtactcc-ggagtagttgcctgcttaag 1150 Score = 54.0 bits (27), Expect = 7e-04 Identities = 77/91 (84%), Gaps = 2/91 (2%) Strand = Plus / Minus Query: 43 aacatcttacagtatgtgcctgcaataagaaactattgacaaagttcccatattctgtaa 102 |||||||||||||| ||| || | ||||||| |||||||||||||| ||| | |||||| Sbjct: 1876 aacatcttacagtaggtgtctacgataagaa-ctattgacaaagtttccacacgctgtaa 1818 Query: 103 aatg-cttggattccttttacataagatggc 132 |||| | || | |||||||||||||||||| Sbjct: 1817 aatgccaggggtcccttttacataagatggc 1787
>dbj|AK119226.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-H12, full insert sequence Length = 1923 Score = 609 bits (307), Expect = e-171 Identities = 473/527 (89%), Gaps = 1/527 (0%) Strand = Plus / Minus Query: 217 cttagttcttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcat 276 |||||||||||||||||||||| |||||||| || || ||||| ||||| |||||||||| Sbjct: 1598 cttagttcttgtacttcatggtttctttctcaaacccaattgtggggaactgttttgcat 1539 Query: 277 attcctccacatcgtggcgaagctttgcaatttcagcttggatgttgctgtcggattgca 336 ||||||||||||| |||||||| |||||||| || | ||| |||||||| || ||||||| Sbjct: 1538 attcctccacatcatggcgaagttttgcaatctcggattgaatgttgctatcagattgca 1479 Query: 337 aagtggcaacaaagtccttcagtttggtacctgctgctgcagctttaaccttcaaagcca 396 ||||||||||||||||||||||||| || || |||||||||| |||||||||||||||| Sbjct: 1478 aagtggcaacaaagtccttcagttttgttccacctgctgcagccttaaccttcaaagcca 1419 Query: 397 agttcactgccgaatcgaagaattcggcaaccttggcgaagtcctcctcaacaaatcctc 456 |||||||||| | ||||||||| || |||||||| || |||||||||||||||||||||| Sbjct: 1418 agttcactgctgcatcgaagaaatcagcaaccttagcaaagtcctcctcaacaaatcctc 1359 Query: 457 ttgatgtaagcgcgggggttcccatcctgatgcctccgggtaccatagctgaaacatcac 516 |||| || || || ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 1358 ttgaggtcagtgctggggttcccatcctgatgcctcctggtaccatagctgaaacatcac 1299 Query: 517 caggaacagtgttcttgtttgctgcaatatgcacattttctaaaaccttctccactcttg 576 ||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 1298 caggaactgtgttcttgtttgctgcaatgtgcacgttttctaaaaccttctccactcttg 1239 Query: 577 aaccatctattccctttttcttgaggttcaccaaaactaaatggttatcagtcccaccag 636 |||||||||| ||||| ||||||| || ||||| ||||||||||| ||||||||||||| Sbjct: 1238 aaccatctatgcccttgctcttgagatttaccaacactaaatggttgtcagtcccaccag 1179 Query: 637 agacaatgtcgtagcctttggaagtcaaactctcagcaaatctagcagagttgctcataa 696 |||||| ||||||||||| | ||||| |||| |||||| | ||| |||| ||||||| Sbjct: 1178 agacaagttcgtagccttttgctgtcaagctctgtgcaaattttgcacagttactcataa 1119 Query: 697 cttgctcttgataagctcggtactcctggagtagttgcctgcttaag 743 |||||||||||||||||| ||||||| |||||||||||||||||||| Sbjct: 1118 cttgctcttgataagctctgtactcc-ggagtagttgcctgcttaag 1073 Score = 54.0 bits (27), Expect = 7e-04 Identities = 77/91 (84%), Gaps = 2/91 (2%) Strand = Plus / Minus Query: 43 aacatcttacagtatgtgcctgcaataagaaactattgacaaagttcccatattctgtaa 102 |||||||||||||| ||| || | ||||||| |||||||||||||| ||| | |||||| Sbjct: 1799 aacatcttacagtaggtgtctacgataagaa-ctattgacaaagtttccacacgctgtaa 1741 Query: 103 aatg-cttggattccttttacataagatggc 132 |||| | || | |||||||||||||||||| Sbjct: 1740 aatgccaggggtcccttttacataagatggc 1710
>dbj|AK100404.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023086P20, full insert sequence Length = 1976 Score = 609 bits (307), Expect = e-171 Identities = 473/527 (89%), Gaps = 1/527 (0%) Strand = Plus / Minus Query: 217 cttagttcttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcat 276 |||||||||||||||||||||| |||||||| || || ||||| ||||| |||||||||| Sbjct: 1599 cttagttcttgtacttcatggtttctttctcaaacccaattgtggggaactgttttgcat 1540 Query: 277 attcctccacatcgtggcgaagctttgcaatttcagcttggatgttgctgtcggattgca 336 ||||||||||||| |||||||| |||||||| || | ||| |||||||| || ||||||| Sbjct: 1539 attcctccacatcatggcgaagttttgcaatctcggattgaatgttgctatcagattgca 1480 Query: 337 aagtggcaacaaagtccttcagtttggtacctgctgctgcagctttaaccttcaaagcca 396 ||||||||||||||||||||||||| || || |||||||||| |||||||||||||||| Sbjct: 1479 aagtggcaacaaagtccttcagttttgttccacctgctgcagccttaaccttcaaagcca 1420 Query: 397 agttcactgccgaatcgaagaattcggcaaccttggcgaagtcctcctcaacaaatcctc 456 |||||||||| | ||||||||| || |||||||| || |||||||||||||||||||||| Sbjct: 1419 agttcactgctgcatcgaagaaatcagcaaccttagcaaagtcctcctcaacaaatcctc 1360 Query: 457 ttgatgtaagcgcgggggttcccatcctgatgcctccgggtaccatagctgaaacatcac 516 |||| || || || ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 1359 ttgaggtcagtgctggggttcccatcctgatgcctcctggtaccatagctgaaacatcac 1300 Query: 517 caggaacagtgttcttgtttgctgcaatatgcacattttctaaaaccttctccactcttg 576 ||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 1299 caggaactgtgttcttgtttgctgcaatgtgcacgttttctaaaaccttctccactcttg 1240 Query: 577 aaccatctattccctttttcttgaggttcaccaaaactaaatggttatcagtcccaccag 636 |||||||||| ||||| ||||||| || ||||| ||||||||||| ||||||||||||| Sbjct: 1239 aaccatctatgcccttgctcttgagatttaccaacactaaatggttgtcagtcccaccag 1180 Query: 637 agacaatgtcgtagcctttggaagtcaaactctcagcaaatctagcagagttgctcataa 696 |||||| ||||||||||| | ||||| |||| |||||| | ||| |||| ||||||| Sbjct: 1179 agacaagttcgtagccttttgctgtcaagctctgtgcaaattttgcacagttactcataa 1120 Query: 697 cttgctcttgataagctcggtactcctggagtagttgcctgcttaag 743 |||||||||||||||||| ||||||| |||||||||||||||||||| Sbjct: 1119 cttgctcttgataagctctgtactcc-ggagtagttgcctgcttaag 1074 Score = 54.0 bits (27), Expect = 7e-04 Identities = 77/91 (84%), Gaps = 2/91 (2%) Strand = Plus / Minus Query: 43 aacatcttacagtatgtgcctgcaataagaaactattgacaaagttcccatattctgtaa 102 |||||||||||||| ||| || | ||||||| |||||||||||||| ||| | |||||| Sbjct: 1800 aacatcttacagtaggtgtctacgataagaa-ctattgacaaagtttccacacgctgtaa 1742 Query: 103 aatg-cttggattccttttacataagatggc 132 |||| | || | |||||||||||||||||| Sbjct: 1741 aatgccaggggtcccttttacataagatggc 1711
>dbj|AK060674.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-A01, full insert sequence Length = 1844 Score = 609 bits (307), Expect = e-171 Identities = 473/527 (89%), Gaps = 1/527 (0%) Strand = Plus / Minus Query: 217 cttagttcttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcat 276 |||||||||||||||||||||| |||||||| || || ||||| ||||| |||||||||| Sbjct: 1591 cttagttcttgtacttcatggtttctttctcaaacccaattgtggggaactgttttgcat 1532 Query: 277 attcctccacatcgtggcgaagctttgcaatttcagcttggatgttgctgtcggattgca 336 ||||||||||||| |||||||| |||||||| || | ||| |||||||| || ||||||| Sbjct: 1531 attcctccacatcatggcgaagttttgcaatctcggattgaatgttgctatcagattgca 1472 Query: 337 aagtggcaacaaagtccttcagtttggtacctgctgctgcagctttaaccttcaaagcca 396 ||||||||||||||||||||||||| || || |||||||||| |||||||||||||||| Sbjct: 1471 aagtggcaacaaagtccttcagttttgttccacctgctgcagccttaaccttcaaagcca 1412 Query: 397 agttcactgccgaatcgaagaattcggcaaccttggcgaagtcctcctcaacaaatcctc 456 |||||||||| | ||||||||| || |||||||| || |||||||||||||||||||||| Sbjct: 1411 agttcactgctgcatcgaagaaatcagcaaccttagcaaagtcctcctcaacaaatcctc 1352 Query: 457 ttgatgtaagcgcgggggttcccatcctgatgcctccgggtaccatagctgaaacatcac 516 |||| || || || ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 1351 ttgaggtcagtgctggggttcccatcctgatgcctcctggtaccatagctgaaacatcac 1292 Query: 517 caggaacagtgttcttgtttgctgcaatatgcacattttctaaaaccttctccactcttg 576 ||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 1291 caggaactgtgttcttgtttgctgcaatgtgcacgttttctaaaaccttctccactcttg 1232 Query: 577 aaccatctattccctttttcttgaggttcaccaaaactaaatggttatcagtcccaccag 636 |||||||||| ||||| ||||||| || ||||| ||||||||||| ||||||||||||| Sbjct: 1231 aaccatctatgcccttgctcttgagatttaccaacactaaatggttgtcagtcccaccag 1172 Query: 637 agacaatgtcgtagcctttggaagtcaaactctcagcaaatctagcagagttgctcataa 696 |||||| ||||||||||| | ||||| |||| |||||| | ||| |||| ||||||| Sbjct: 1171 agacaagttcgtagccttttgctgtcaagctctgtgcaaattttgcacagttactcataa 1112 Query: 697 cttgctcttgataagctcggtactcctggagtagttgcctgcttaag 743 |||||||||||||||||| ||||||| |||||||||||||||||||| Sbjct: 1111 cttgctcttgataagctctgtactcc-ggagtagttgcctgcttaag 1066 Score = 54.0 bits (27), Expect = 7e-04 Identities = 77/91 (84%), Gaps = 2/91 (2%) Strand = Plus / Minus Query: 43 aacatcttacagtatgtgcctgcaataagaaactattgacaaagttcccatattctgtaa 102 |||||||||||||| ||| || | ||||||| |||||||||||||| ||| | |||||| Sbjct: 1792 aacatcttacagtaggtgtctacgataagaa-ctattgacaaagtttccacacgctgtaa 1734 Query: 103 aatg-cttggattccttttacataagatggc 132 |||| | || | |||||||||||||||||| Sbjct: 1733 aatgccaggggtcccttttacataagatggc 1703
>dbj|AK061913.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-A08, full insert sequence Length = 1402 Score = 601 bits (303), Expect = e-168 Identities = 472/527 (89%), Gaps = 1/527 (0%) Strand = Plus / Minus Query: 217 cttagttcttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcat 276 |||||||||||||||||||||| |||||||| || || ||||| ||||| |||||||||| Sbjct: 1128 cttagttcttgtacttcatggtttctttctcaaacccaattgtggggaactgttttgcat 1069 Query: 277 attcctccacatcgtggcgaagctttgcaatttcagcttggatgttgctgtcggattgca 336 ||||||||||||| |||||||| |||||||| || | ||| |||||||| || ||||||| Sbjct: 1068 attcctccacatcatggcgaagttttgcaatctcggattgaatgttgctatcagattgca 1009 Query: 337 aagtggcaacaaagtccttcagtttggtacctgctgctgcagctttaaccttcaaagcca 396 ||||||||||||||||||||||||| || || |||||||||| |||||||||||||||| Sbjct: 1008 aagtggcaacaaagtccttcagttttgttccacctgctgcagccttaaccttcaaagcca 949 Query: 397 agttcactgccgaatcgaagaattcggcaaccttggcgaagtcctcctcaacaaatcctc 456 |||||||||| | ||||||||| || |||||||| || |||||||||||||||||||||| Sbjct: 948 agttcactgctgcatcgaagaaatcagcaaccttagcaaagtcctcctcaacaaatcctc 889 Query: 457 ttgatgtaagcgcgggggttcccatcctgatgcctccgggtaccatagctgaaacatcac 516 |||| || || || ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 888 ttgaggtcagtgctggggttcccatcctgatgcctcctggtaccatagctgaaacatcac 829 Query: 517 caggaacagtgttcttgtttgctgcaatatgcacattttctaaaaccttctccactcttg 576 ||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct: 828 caggaactgtgttcttgtttgctgcaatgtgcacgttttctaaaaccttctccactcttg 769 Query: 577 aaccatctattccctttttcttgaggttcaccaaaactaaatggttatcagtcccaccag 636 |||||||||| ||||| ||||||| || ||||| ||||||||||| ||||||||||||| Sbjct: 768 aaccatctatgcccttgctcttgagatttaccaacactaaatggttgtcagtcccaccag 709 Query: 637 agacaatgtcgtagcctttggaagtcaaactctcagcaaatctagcagagttgctcataa 696 || ||| ||||||||||| | ||||| |||| |||||| | ||| |||| ||||||| Sbjct: 708 aggcaagttcgtagccttttgctgtcaagctctgtgcaaattttgcacagttactcataa 649 Query: 697 cttgctcttgataagctcggtactcctggagtagttgcctgcttaag 743 |||||||||||||||||| ||||||| |||||||||||||||||||| Sbjct: 648 cttgctcttgataagctctgtactcc-ggagtagttgcctgcttaag 603 Score = 54.0 bits (27), Expect = 7e-04 Identities = 77/91 (84%), Gaps = 2/91 (2%) Strand = Plus / Minus Query: 43 aacatcttacagtatgtgcctgcaataagaaactattgacaaagttcccatattctgtaa 102 |||||||||||||| ||| || | ||||||| |||||||||||||| ||| | |||||| Sbjct: 1329 aacatcttacagtaggtgtctacgataagaa-ctattgacaaagtttccacacgctgtaa 1271 Query: 103 aatgcttggattcc-ttttacataagatggc 132 ||||| || ||| |||||||||||||||| Sbjct: 1270 aatgccaggggtcccttttacataagatggc 1240
>gb|AY105738.1| Zea mays PCO070960 mRNA sequence Length = 1476 Score = 466 bits (235), Expect = e-128 Identities = 453/523 (86%), Gaps = 7/523 (1%) Strand = Plus / Minus Query: 218 ttagttcttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcata 277 |||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||| | Sbjct: 1231 ttagttcttgtatttcatggtctctttctcaaatccaattgttgggaattgttttgcaaa 1172 Query: 278 ttcctccacatcgtggcgaagctttgcaatttcagcttggatgttgctgtcggattgcaa 337 |||||| ||||| ||||||||||||||||| ||| |||||||| || || |||||||| Sbjct: 1171 ttcctctacatcatggcgaagctttgcaatctcaacttggatg---ctatcagattgcaa 1115 Query: 338 agtggcaacaaagtccttcagtttggt---acctgctgctgcagctttaaccttcaaagc 394 ||||||||||||||||||||| || || ||||| | |||||| |||| |||||| || Sbjct: 1114 agtggcaacaaagtccttcagctttgttccacctgtcgttgcagccttaatcttcaaggc 1055 Query: 395 caagttcactgccgaatcgaagaattcggcaaccttggcgaagtcctcctcaacaaatcc 454 || |||||||| | ||||||||| || ||||| || ||||| || || ||||||||||| Sbjct: 1054 cagattcactgctgcatcgaagaagtcagcaactttagcgaaatcttcttcaacaaatcc 995 Query: 455 tcttgatgtaagcgcgggggttcccatcctgatgcctccgggtaccatagctgaaacatc 514 ||| || ||||| || ||||||||||||||||||||||| || ||||||||||||||||| Sbjct: 994 tctcgacgtaagggctggggttcccatcctgatgcctcctggcaccatagctgaaacatc 935 Query: 515 accaggaacagtgttcttgtttgctgcaatatgcacattttctaaaaccttctccactct 574 ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| || Sbjct: 934 accaggaactgtgttcttgtttgctgcaatatgcacactttctaaaaccttctccaccct 875 Query: 575 tgaaccatctattccctttttcttgaggttcaccaaaactaaatggttatcagtcccacc 634 |||||||||||| ||||| |||||||| ||||||| |||||||||||| ||||||||||| Sbjct: 874 tgaaccatctatccccttattcttgagattcaccagaactaaatggttgtcagtcccacc 815 Query: 635 agagacaatgtcgtagcctttggaagtcaaactctcagcaaatctagcagagttgctcat 694 ||||| | || || ||||| ||| ||| |||| |||||| ||||| | || || || Sbjct: 814 ggagacgagttcatatccttttgaaatcaggctctgcgcaaatttagcacaattactgat 755 Query: 695 aacttgctcttgataagctcggtactcctggagtagttgcctg 737 |||||||||||| ||||||| ||| | |||||||||||||||| Sbjct: 754 aacttgctcttggtaagctctgta-ttctggagtagttgcctg 713
>gb|AF439728.1|AF439728 Zea mays serine hydroxymethyltransferase mRNA, partial cds Length = 1028 Score = 283 bits (143), Expect = 4e-73 Identities = 237/267 (88%), Gaps = 1/267 (0%) Strand = Plus / Minus Query: 471 ggggttcccatcctgatgcctccgggtaccatagctgaaacatcaccaggaacagtgttc 530 ||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||| Sbjct: 1025 ggggttcccatcctgatgcctcctggcaccatagctgaaacatcaccaggaactgtgttc 966 Query: 531 ttgtttgctgcaatatgcacattttctaaaaccttctccactcttgaaccatctattccc 590 ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||| Sbjct: 965 ttgtttgctgcaatatgcacactttctaaaaccttctccacccttgaaccatctatcccc 906 Query: 591 tttttcttgaggttcaccaaaactaaatggttatcagtcccaccagagacaatgtcgtag 650 || |||||||| ||||||| |||||||||||| ||||||||||||||||| | || || Sbjct: 905 ttattcttgagattcaccagaactaaatggttgtcagtcccaccagagacgagttcatat 846 Query: 651 cctttggaagtcaaactctcagcaaatctagcagagttgctcataacttgctcttgataa 710 ||||| ||| ||| |||| |||||| ||||| | || || |||||||||||||| ||| Sbjct: 845 ccttttgaaatcaggctctgcgcaaatttagcacaattactgataacttgctcttggtaa 786 Query: 711 gctcggtactcctggagtagttgcctg 737 |||| ||| | |||||||||||||||| Sbjct: 785 gctctgta-ttctggagtagttgcctg 760
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 188 bits (95), Expect = 2e-44 Identities = 110/115 (95%) Strand = Plus / Minus Query: 477 cccatcctgatgcctccgggtaccatagctgaaacatcaccaggaacagtgttcttgttt 536 ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| Sbjct: 30010834 cccatcctgatgcctcctggtaccatagctgaaacatcaccaggaactgtgttcttgttt 30010775 Query: 537 gctgcaatatgcacattttctaaaaccttctccactcttgaaccatctattccct 591 |||||||| ||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct: 30010774 gctgcaatgtgcacgttttctaaaaccttctccactcttgaaccatctatgccct 30010720 Score = 176 bits (89), Expect = 7e-41 Identities = 131/145 (90%) Strand = Plus / Minus Query: 217 cttagttcttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcat 276 |||||||||||||||||||||| |||||||| || || ||||| ||||| |||||||||| Sbjct: 30011320 cttagttcttgtacttcatggtttctttctcaaacccaattgtggggaactgttttgcat 30011261 Query: 277 attcctccacatcgtggcgaagctttgcaatttcagcttggatgttgctgtcggattgca 336 ||||||||||||| |||||||| |||||||| || | ||| |||||||| || ||||||| Sbjct: 30011260 attcctccacatcatggcgaagttttgcaatctcggattgaatgttgctatcagattgca 30011201 Query: 337 aagtggcaacaaagtccttcagttt 361 ||||||||||||||||||||||||| Sbjct: 30011200 aagtggcaacaaagtccttcagttt 30011176 Score = 129 bits (65), Expect = 1e-26 Identities = 98/109 (89%) Strand = Plus / Minus Query: 370 ctgctgcagctttaaccttcaaagccaagttcactgccgaatcgaagaattcggcaacct 429 |||||||||| |||||||||||||||||||||||||| | ||||||||| || ||||||| Sbjct: 30011026 ctgctgcagccttaaccttcaaagccaagttcactgctgcatcgaagaaatcagcaacct 30010967 Query: 430 tggcgaagtcctcctcaacaaatcctcttgatgtaagcgcgggggttcc 478 | || |||||||||||||||||||||||||| || || || |||||||| Sbjct: 30010966 tagcaaagtcctcctcaacaaatcctcttgaggtcagtgctggggttcc 30010918 Score = 75.8 bits (38), Expect = 2e-10 Identities = 60/66 (90%), Gaps = 1/66 (1%) Strand = Plus / Minus Query: 672 gcaaatctagcagagttgctcataacttgctcttgataagctcggtactcctggagtagt 731 |||||| | ||| |||| ||||||||||||||||||||||||| ||||||| |||||||| Sbjct: 30010174 gcaaattttgcacagttactcataacttgctcttgataagctctgtactcc-ggagtagt 30010116 Query: 732 tgcctg 737 |||||| Sbjct: 30010115 tgcctg 30010110 Score = 73.8 bits (37), Expect = 7e-10 Identities = 55/61 (90%) Strand = Plus / Minus Query: 595 tcttgaggttcaccaaaactaaatggttatcagtcccaccagagacaatgtcgtagcctt 654 ||||||| || ||||| ||||||||||| ||||||||||||||||||| |||||||||| Sbjct: 30010458 tcttgagatttaccaacactaaatggttgtcagtcccaccagagacaagttcgtagcctt 30010399 Query: 655 t 655 | Sbjct: 30010398 t 30010398 Score = 54.0 bits (27), Expect = 7e-04 Identities = 77/91 (84%), Gaps = 2/91 (2%) Strand = Plus / Minus Query: 43 aacatcttacagtatgtgcctgcaataagaaactattgacaaagttcccatattctgtaa 102 |||||||||||||| ||| || | ||||||| |||||||||||||| ||| | |||||| Sbjct: 30011757 aacatcttacagtaggtgtctacgataagaa-ctattgacaaagtttccacacgctgtaa 30011699 Query: 103 aatgcttggattcc-ttttacataagatggc 132 ||||| || ||| |||||||||||||||| Sbjct: 30011698 aatgccaggggtcccttttacataagatggc 30011668
>gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genomic sequence, complete sequence Length = 155106 Score = 188 bits (95), Expect = 2e-44 Identities = 110/115 (95%) Strand = Plus / Plus Query: 477 cccatcctgatgcctccgggtaccatagctgaaacatcaccaggaacagtgttcttgttt 536 ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| Sbjct: 96917 cccatcctgatgcctcctggtaccatagctgaaacatcaccaggaactgtgttcttgttt 96976 Query: 537 gctgcaatatgcacattttctaaaaccttctccactcttgaaccatctattccct 591 |||||||| ||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct: 96977 gctgcaatgtgcacgttttctaaaaccttctccactcttgaaccatctatgccct 97031 Score = 176 bits (89), Expect = 7e-41 Identities = 131/145 (90%) Strand = Plus / Plus Query: 217 cttagttcttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcat 276 |||||||||||||||||||||| |||||||| || || ||||| ||||| |||||||||| Sbjct: 96431 cttagttcttgtacttcatggtttctttctcaaacccaattgtggggaactgttttgcat 96490 Query: 277 attcctccacatcgtggcgaagctttgcaatttcagcttggatgttgctgtcggattgca 336 ||||||||||||| |||||||| |||||||| || | ||| |||||||| || ||||||| Sbjct: 96491 attcctccacatcatggcgaagttttgcaatctcggattgaatgttgctatcagattgca 96550 Query: 337 aagtggcaacaaagtccttcagttt 361 ||||||||||||||||||||||||| Sbjct: 96551 aagtggcaacaaagtccttcagttt 96575 Score = 129 bits (65), Expect = 1e-26 Identities = 98/109 (89%) Strand = Plus / Plus Query: 370 ctgctgcagctttaaccttcaaagccaagttcactgccgaatcgaagaattcggcaacct 429 |||||||||| |||||||||||||||||||||||||| | ||||||||| || ||||||| Sbjct: 96725 ctgctgcagccttaaccttcaaagccaagttcactgctgcatcgaagaaatcagcaacct 96784 Query: 430 tggcgaagtcctcctcaacaaatcctcttgatgtaagcgcgggggttcc 478 | || |||||||||||||||||||||||||| || || || |||||||| Sbjct: 96785 tagcaaagtcctcctcaacaaatcctcttgaggtcagtgctggggttcc 96833 Score = 75.8 bits (38), Expect = 2e-10 Identities = 60/66 (90%), Gaps = 1/66 (1%) Strand = Plus / Plus Query: 672 gcaaatctagcagagttgctcataacttgctcttgataagctcggtactcctggagtagt 731 |||||| | ||| |||| ||||||||||||||||||||||||| ||||||| |||||||| Sbjct: 97577 gcaaattttgcacagttactcataacttgctcttgataagctctgtactcc-ggagtagt 97635 Query: 732 tgcctg 737 |||||| Sbjct: 97636 tgcctg 97641 Score = 73.8 bits (37), Expect = 7e-10 Identities = 55/61 (90%) Strand = Plus / Plus Query: 595 tcttgaggttcaccaaaactaaatggttatcagtcccaccagagacaatgtcgtagcctt 654 ||||||| || ||||| ||||||||||| ||||||||||||||||||| |||||||||| Sbjct: 97293 tcttgagatttaccaacactaaatggttgtcagtcccaccagagacaagttcgtagcctt 97352 Query: 655 t 655 | Sbjct: 97353 t 97353 Score = 54.0 bits (27), Expect = 7e-04 Identities = 77/91 (84%), Gaps = 2/91 (2%) Strand = Plus / Plus Query: 43 aacatcttacagtatgtgcctgcaataagaaactattgacaaagttcccatattctgtaa 102 |||||||||||||| ||| || | ||||||| |||||||||||||| ||| | |||||| Sbjct: 95994 aacatcttacagtaggtgtctacgataagaa-ctattgacaaagtttccacacgctgtaa 96052 Query: 103 aatg-cttggattccttttacataagatggc 132 |||| | || | |||||||||||||||||| Sbjct: 96053 aatgccaggggtcccttttacataagatggc 96083
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 188 bits (95), Expect = 2e-44 Identities = 110/115 (95%) Strand = Plus / Minus Query: 477 cccatcctgatgcctccgggtaccatagctgaaacatcaccaggaacagtgttcttgttt 536 ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| Sbjct: 30102256 cccatcctgatgcctcctggtaccatagctgaaacatcaccaggaactgtgttcttgttt 30102197 Query: 537 gctgcaatatgcacattttctaaaaccttctccactcttgaaccatctattccct 591 |||||||| ||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct: 30102196 gctgcaatgtgcacgttttctaaaaccttctccactcttgaaccatctatgccct 30102142 Score = 176 bits (89), Expect = 7e-41 Identities = 131/145 (90%) Strand = Plus / Minus Query: 217 cttagttcttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcat 276 |||||||||||||||||||||| |||||||| || || ||||| ||||| |||||||||| Sbjct: 30102742 cttagttcttgtacttcatggtttctttctcaaacccaattgtggggaactgttttgcat 30102683 Query: 277 attcctccacatcgtggcgaagctttgcaatttcagcttggatgttgctgtcggattgca 336 ||||||||||||| |||||||| |||||||| || | ||| |||||||| || ||||||| Sbjct: 30102682 attcctccacatcatggcgaagttttgcaatctcggattgaatgttgctatcagattgca 30102623 Query: 337 aagtggcaacaaagtccttcagttt 361 ||||||||||||||||||||||||| Sbjct: 30102622 aagtggcaacaaagtccttcagttt 30102598 Score = 129 bits (65), Expect = 1e-26 Identities = 98/109 (89%) Strand = Plus / Minus Query: 370 ctgctgcagctttaaccttcaaagccaagttcactgccgaatcgaagaattcggcaacct 429 |||||||||| |||||||||||||||||||||||||| | ||||||||| || ||||||| Sbjct: 30102448 ctgctgcagccttaaccttcaaagccaagttcactgctgcatcgaagaaatcagcaacct 30102389 Query: 430 tggcgaagtcctcctcaacaaatcctcttgatgtaagcgcgggggttcc 478 | || |||||||||||||||||||||||||| || || || |||||||| Sbjct: 30102388 tagcaaagtcctcctcaacaaatcctcttgaggtcagtgctggggttcc 30102340 Score = 75.8 bits (38), Expect = 2e-10 Identities = 60/66 (90%), Gaps = 1/66 (1%) Strand = Plus / Minus Query: 672 gcaaatctagcagagttgctcataacttgctcttgataagctcggtactcctggagtagt 731 |||||| | ||| |||| ||||||||||||||||||||||||| ||||||| |||||||| Sbjct: 30101596 gcaaattttgcacagttactcataacttgctcttgataagctctgtactcc-ggagtagt 30101538 Query: 732 tgcctg 737 |||||| Sbjct: 30101537 tgcctg 30101532 Score = 73.8 bits (37), Expect = 7e-10 Identities = 55/61 (90%) Strand = Plus / Minus Query: 595 tcttgaggttcaccaaaactaaatggttatcagtcccaccagagacaatgtcgtagcctt 654 ||||||| || ||||| ||||||||||| ||||||||||||||||||| |||||||||| Sbjct: 30101880 tcttgagatttaccaacactaaatggttgtcagtcccaccagagacaagttcgtagcctt 30101821 Query: 655 t 655 | Sbjct: 30101820 t 30101820 Score = 54.0 bits (27), Expect = 7e-04 Identities = 77/91 (84%), Gaps = 2/91 (2%) Strand = Plus / Minus Query: 43 aacatcttacagtatgtgcctgcaataagaaactattgacaaagttcccatattctgtaa 102 |||||||||||||| ||| || | ||||||| |||||||||||||| ||| | |||||| Sbjct: 30103179 aacatcttacagtaggtgtctacgataagaa-ctattgacaaagtttccacacgctgtaa 30103121 Query: 103 aatg-cttggattccttttacataagatggc 132 |||| | || | |||||||||||||||||| Sbjct: 30103120 aatgccaggggtcccttttacataagatggc 30103090
>ref|NM_180750.1| Arabidopsis thaliana glycine hydroxymethyltransferase AT5G26780 transcript variant AT5G26780.2 mRNA, complete cds Length = 1966 Score = 168 bits (85), Expect = 2e-38 Identities = 169/197 (85%) Strand = Plus / Minus Query: 441 tcctcaacaaatcctcttgatgtaagcgcgggggttcccatcctgatgcctccgggtacc 500 ||||||| |||||||||||||| || || || |||||||| | |||||| ||||| ||| Sbjct: 1483 tcctcaatgaatcctcttgatgtgagggctggtgttcccatacggatgccaccgggaacc 1424 Query: 501 atagctgaaacatcaccaggaacagtgttcttgtttgctgcaatatgcacattttctaaa 560 || || |||||||||||||||||||| |||||||||||||||||||| || |||||| Sbjct: 1423 atggcagaaacatcaccaggaacagtattcttgtttgctgcaatatgtactaattctaat 1364 Query: 561 accttctccactcttgaaccatctattccctttttcttgaggttcaccaaaactaaatgg 620 || || ||||||||||| |||||||||||||| || || || ||||||||||||||||| Sbjct: 1363 actttttccactcttgatccatctattcccttgtttttcagattcaccaaaactaaatga 1304 Query: 621 ttatcagtcccaccaga 637 |||||||| || ||||| Sbjct: 1303 ttatcagtgcctccaga 1287 Score = 50.1 bits (25), Expect = 0.011 Identities = 43/49 (87%) Strand = Plus / Minus Query: 232 tcatggtctctttctcgaatccgattgttgggaattgttttgcatattc 280 |||| |||||||||||||| || || ||||||||||| || |||||||| Sbjct: 1692 tcatcgtctctttctcgaacccaatcgttgggaattgcttagcatattc 1644
>ref|NM_122560.2| Arabidopsis thaliana glycine hydroxymethyltransferase AT5G26780 transcript variant AT5G26780.3 mRNA, complete cds Length = 2072 Score = 168 bits (85), Expect = 2e-38 Identities = 169/197 (85%) Strand = Plus / Minus Query: 441 tcctcaacaaatcctcttgatgtaagcgcgggggttcccatcctgatgcctccgggtacc 500 ||||||| |||||||||||||| || || || |||||||| | |||||| ||||| ||| Sbjct: 1483 tcctcaatgaatcctcttgatgtgagggctggtgttcccatacggatgccaccgggaacc 1424 Query: 501 atagctgaaacatcaccaggaacagtgttcttgtttgctgcaatatgcacattttctaaa 560 || || |||||||||||||||||||| |||||||||||||||||||| || |||||| Sbjct: 1423 atggcagaaacatcaccaggaacagtattcttgtttgctgcaatatgtactaattctaat 1364 Query: 561 accttctccactcttgaaccatctattccctttttcttgaggttcaccaaaactaaatgg 620 || || ||||||||||| |||||||||||||| || || || ||||||||||||||||| Sbjct: 1363 actttttccactcttgatccatctattcccttgtttttcagattcaccaaaactaaatga 1304 Query: 621 ttatcagtcccaccaga 637 |||||||| || ||||| Sbjct: 1303 ttatcagtgcctccaga 1287 Score = 50.1 bits (25), Expect = 0.011 Identities = 43/49 (87%) Strand = Plus / Minus Query: 232 tcatggtctctttctcgaatccgattgttgggaattgttttgcatattc 280 |||| |||||||||||||| || || ||||||||||| || |||||||| Sbjct: 1692 tcatcgtctctttctcgaacccaatcgttgggaattgcttagcatattc 1644
>ref|NM_180749.2| Arabidopsis thaliana glycine hydroxymethyltransferase AT5G26780 transcript variant AT5G26780.1 mRNA, complete cds Length = 1962 Score = 168 bits (85), Expect = 2e-38 Identities = 169/197 (85%) Strand = Plus / Minus Query: 441 tcctcaacaaatcctcttgatgtaagcgcgggggttcccatcctgatgcctccgggtacc 500 ||||||| |||||||||||||| || || || |||||||| | |||||| ||||| ||| Sbjct: 1435 tcctcaatgaatcctcttgatgtgagggctggtgttcccatacggatgccaccgggaacc 1376 Query: 501 atagctgaaacatcaccaggaacagtgttcttgtttgctgcaatatgcacattttctaaa 560 || || |||||||||||||||||||| |||||||||||||||||||| || |||||| Sbjct: 1375 atggcagaaacatcaccaggaacagtattcttgtttgctgcaatatgtactaattctaat 1316 Query: 561 accttctccactcttgaaccatctattccctttttcttgaggttcaccaaaactaaatgg 620 || || ||||||||||| |||||||||||||| || || || ||||||||||||||||| Sbjct: 1315 actttttccactcttgatccatctattcccttgtttttcagattcaccaaaactaaatga 1256 Query: 621 ttatcagtcccaccaga 637 |||||||| || ||||| Sbjct: 1255 ttatcagtgcctccaga 1239 Score = 50.1 bits (25), Expect = 0.011 Identities = 43/49 (87%) Strand = Plus / Minus Query: 232 tcatggtctctttctcgaatccgattgttgggaattgttttgcatattc 280 |||| |||||||||||||| || || ||||||||||| || |||||||| Sbjct: 1644 tcatcgtctctttctcgaacccaatcgttgggaattgcttagcatattc 1596
>gb|BT001097.1| Arabidopsis thaliana clone C104687 (D) putative glycine hydroxymethyltransferase (At5g26780) mRNA, complete cds Length = 1633 Score = 168 bits (85), Expect = 2e-38 Identities = 169/197 (85%) Strand = Plus / Minus Query: 441 tcctcaacaaatcctcttgatgtaagcgcgggggttcccatcctgatgcctccgggtacc 500 ||||||| |||||||||||||| || || || |||||||| | |||||| ||||| ||| Sbjct: 1379 tcctcaatgaatcctcttgatgtgagggctggtgttcccatacggatgccaccgggaacc 1320 Query: 501 atagctgaaacatcaccaggaacagtgttcttgtttgctgcaatatgcacattttctaaa 560 || || |||||||||||||||||||| |||||||||||||||||||| || |||||| Sbjct: 1319 atggcagaaacatcaccaggaacagtattcttgtttgctgcaatatgtactaattctaat 1260 Query: 561 accttctccactcttgaaccatctattccctttttcttgaggttcaccaaaactaaatgg 620 || || ||||||||||| |||||||||||||| || || || ||||||||||||||||| Sbjct: 1259 actttttccactcttgatccatctattcccttgtttttcagattcaccaaaactaaatga 1200 Query: 621 ttatcagtcccaccaga 637 |||||||| || ||||| Sbjct: 1199 ttatcagtgcctccaga 1183 Score = 50.1 bits (25), Expect = 0.011 Identities = 43/49 (87%) Strand = Plus / Minus Query: 232 tcatggtctctttctcgaatccgattgttgggaattgttttgcatattc 280 |||| |||||||||||||| || || ||||||||||| || |||||||| Sbjct: 1588 tcatcgtctctttctcgaacccaatcgttgggaattgcttagcatattc 1540
>dbj|AK220785.1| Arabidopsis thaliana mRNA for glycine hydroxymethyltransferase -like protein, complete cds, clone: RAFL22-26-M08 Length = 909 Score = 168 bits (85), Expect = 2e-38 Identities = 169/197 (85%) Strand = Plus / Minus Query: 441 tcctcaacaaatcctcttgatgtaagcgcgggggttcccatcctgatgcctccgggtacc 500 ||||||| |||||||||||||| || || || |||||||| | |||||| ||||| ||| Sbjct: 343 tcctcaatgaatcctcttgatgtgagggctggtgttcccatacggatgccaccgggaacc 284 Query: 501 atagctgaaacatcaccaggaacagtgttcttgtttgctgcaatatgcacattttctaaa 560 || || |||||||||||||||||||| |||||||||||||||||||| || |||||| Sbjct: 283 atggcagaaacatcaccaggaacagtattcttgtttgctgcaatatgtactaattctaat 224 Query: 561 accttctccactcttgaaccatctattccctttttcttgaggttcaccaaaactaaatgg 620 || || ||||||||||| |||||||||||||| || || || ||||||||||||||||| Sbjct: 223 actttttccactcttgatccatctattcccttgtttttcagattcaccaaaactaaatga 164 Query: 621 ttatcagtcccaccaga 637 |||||||| || ||||| Sbjct: 163 ttatcagtgcctccaga 147 Score = 50.1 bits (25), Expect = 0.011 Identities = 43/49 (87%) Strand = Plus / Minus Query: 232 tcatggtctctttctcgaatccgattgttgggaattgttttgcatattc 280 |||| |||||||||||||| || || ||||||||||| || |||||||| Sbjct: 552 tcatcgtctctttctcgaacccaatcgttgggaattgcttagcatattc 504
>emb|BX830710.1|CNS09YQU Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS16ZG06 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1960 Score = 168 bits (85), Expect = 2e-38 Identities = 169/197 (85%) Strand = Plus / Minus Query: 441 tcctcaacaaatcctcttgatgtaagcgcgggggttcccatcctgatgcctccgggtacc 500 ||||||| |||||||||||||| || || || |||||||| | |||||| ||||| ||| Sbjct: 1429 tcctcaatgaatcctcttgatgtgagggctggtgttcccatacggatgccaccgggaacc 1370 Query: 501 atagctgaaacatcaccaggaacagtgttcttgtttgctgcaatatgcacattttctaaa 560 || || |||||||||||||||||||| |||||||||||||||||||| || |||||| Sbjct: 1369 atggcagaaacatcaccaggaacagtattcttgtttgctgcaatatgtactaattctaat 1310 Query: 561 accttctccactcttgaaccatctattccctttttcttgaggttcaccaaaactaaatgg 620 || || ||||||||||| |||||||||||||| || || || ||||||||||||||||| Sbjct: 1309 actttttccactcttgatccatctattcccttgtttttcagattcaccaaaactaaatga 1250 Query: 621 ttatcagtcccaccaga 637 |||||||| || ||||| Sbjct: 1249 ttatcagtgcctccaga 1233 Score = 50.1 bits (25), Expect = 0.011 Identities = 43/49 (87%) Strand = Plus / Minus Query: 232 tcatggtctctttctcgaatccgattgttgggaattgttttgcatattc 280 |||| |||||||||||||| || || ||||||||||| || |||||||| Sbjct: 1639 tcatcgtctctttctcgaacccaatcgttgggaattgcttagcatattc 1591
>gb|BT001113.1| Arabidopsis thaliana clone C104687 (D) putative glycine hydroxymethyltransferase (At5g26780) mRNA, complete cds Length = 1633 Score = 168 bits (85), Expect = 2e-38 Identities = 169/197 (85%) Strand = Plus / Minus Query: 441 tcctcaacaaatcctcttgatgtaagcgcgggggttcccatcctgatgcctccgggtacc 500 ||||||| |||||||||||||| || || || |||||||| | |||||| ||||| ||| Sbjct: 1379 tcctcaatgaatcctcttgatgtgagggctggtgttcccatacggatgccaccgggaacc 1320 Query: 501 atagctgaaacatcaccaggaacagtgttcttgtttgctgcaatatgcacattttctaaa 560 || || |||||||||||||||||||| |||||||||||||||||||| || |||||| Sbjct: 1319 atggcagaaacatcaccaggaacagtattcttgtttgctgcaatatgtactaattctaat 1260 Query: 561 accttctccactcttgaaccatctattccctttttcttgaggttcaccaaaactaaatgg 620 || || ||||||||||| |||||||||||||| || || || ||||||||||||||||| Sbjct: 1259 actttttccactcttgatccatctattcccttgtttttcagattcaccaaaactaaatga 1200 Query: 621 ttatcagtcccaccaga 637 |||||||| || ||||| Sbjct: 1199 ttatcagtgcctccaga 1183 Score = 50.1 bits (25), Expect = 0.011 Identities = 43/49 (87%) Strand = Plus / Minus Query: 232 tcatggtctctttctcgaatccgattgttgggaattgttttgcatattc 280 |||| |||||||||||||| || || ||||||||||| || |||||||| Sbjct: 1588 tcatcgtctctttctcgaacccaatcgttgggaattgcttagcatattc 1540
>gb|AY035117.1| Arabidopsis thaliana putative glycine hydroxymethyltransferase (At5g26780) mRNA, complete cds Length = 1933 Score = 161 bits (81), Expect = 4e-36 Identities = 168/197 (85%) Strand = Plus / Minus Query: 441 tcctcaacaaatcctcttgatgtaagcgcgggggttcccatcctgatgcctccgggtacc 500 ||||||| |||||||||||||| || || || |||||||| |||||| ||||| ||| Sbjct: 1434 tcctcaatgaatcctcttgatgtgagggctggtgttcccatatggatgccaccgggaacc 1375 Query: 501 atagctgaaacatcaccaggaacagtgttcttgtttgctgcaatatgcacattttctaaa 560 || || |||||||||||||||||||| |||||||||||||||||||| || |||||| Sbjct: 1374 atggcagaaacatcaccaggaacagtattcttgtttgctgcaatatgtactaattctaat 1315 Query: 561 accttctccactcttgaaccatctattccctttttcttgaggttcaccaaaactaaatgg 620 || || ||||||||||| |||||||||||||| || || || ||||||||||||||||| Sbjct: 1314 actttttccactcttgatccatctattcccttgtttttcagattcaccaaaactaaatga 1255 Query: 621 ttatcagtcccaccaga 637 |||||||| || ||||| Sbjct: 1254 ttatcagtgcctccaga 1238 Score = 50.1 bits (25), Expect = 0.011 Identities = 43/49 (87%) Strand = Plus / Minus Query: 232 tcatggtctctttctcgaatccgattgttgggaattgttttgcatattc 280 |||| |||||||||||||| || || ||||||||||| || |||||||| Sbjct: 1643 tcatcgtctctttctcgaacccaatcgttgggaattgcttagcatattc 1595
>gb|M87649.1|PEASHMTA Pisum sativum serine hydroxymethyltransferase mRNA, complete cds Length = 1803 Score = 133 bits (67), Expect = 9e-28 Identities = 184/223 (82%) Strand = Plus / Minus Query: 433 cgaagtcctcctcaacaaatcctcttgatgtaagcgcgggggttcccatcctgatgcctc 492 |||| ||||||||||||||||| ||||| |||||||| || ||||||||||||||||| | Sbjct: 1363 cgaaatcctcctcaacaaatccccttgaagtaagcgcaggagttcccatcctgatgccac 1304 Query: 493 cgggtaccatagctgaaacatcaccaggaacagtgttcttgtttgctgcaatatgcacat 552 | || |||||||| || ||||| || ||||| ||||| || || || |||||||| || Sbjct: 1303 caggaaccatagcagacacatctcctggaactgtgtttttattagcagcaatatgtacta 1244 Query: 553 tttctaaaaccttctccactcttgaaccatctattccctttttcttgaggttcaccaaaa 612 ||| || || ||||| ||||| || ||||| || ||||| ||||| || |||||||||| Sbjct: 1243 attccaacactttctcaactctggacccatcaatacccttgttcttcagattcaccaaaa 1184 Query: 613 ctaaatggttatcagtcccaccagagacaatgtcgtagccttt 655 ||||||| || ||||||||||| || |||| || |||||||| Sbjct: 1183 ctaaatgattctcagtcccaccggaaacaagatcatagccttt 1141 Score = 42.1 bits (21), Expect = 2.6 Identities = 54/65 (83%) Strand = Plus / Minus Query: 225 ttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcatattcctcc 284 |||||||||||||| |||| || || || || ||||| |||||||||||| | ||||| Sbjct: 1571 ttgtacttcatggttgctttttcaaaaccaatggttggaaattgttttgcaaactcctca 1512 Query: 285 acatc 289 ||||| Sbjct: 1511 acatc 1507
>gb|AF007270.1|F2P16 Arabidopsis thaliana BAC F2P16, complete sequence Length = 110946 Score = 109 bits (55), Expect = 1e-20 Identities = 94/107 (87%) Strand = Plus / Minus Query: 485 gatgcctccgggtaccatagctgaaacatcaccaggaacagtgttcttgtttgctgcaat 544 |||||| ||||| ||||| || |||||||||||||||||||| ||||||||||||||||| Sbjct: 22521 gatgccaccgggaaccatggcagaaacatcaccaggaacagtattcttgtttgctgcaat 22462 Query: 545 atgcacattttctaaaaccttctccactcttgaaccatctattccct 591 ||| || |||||| || || ||||||||||| ||||||||||||| Sbjct: 22461 atgtactaattctaatactttttccactcttgatccatctattccct 22415 Score = 50.1 bits (25), Expect = 0.011 Identities = 43/49 (87%) Strand = Plus / Minus Query: 232 tcatggtctctttctcgaatccgattgttgggaattgttttgcatattc 280 |||| |||||||||||||| || || ||||||||||| || |||||||| Sbjct: 23145 tcatcgtctctttctcgaacccaatcgttgggaattgcttagcatattc 23097 Score = 46.1 bits (23), Expect = 0.17 Identities = 32/35 (91%) Strand = Plus / Minus Query: 603 ttcaccaaaactaaatggttatcagtcccaccaga 637 ||||||||||||||||| |||||||| || ||||| Sbjct: 22075 ttcaccaaaactaaatgattatcagtgcctccaga 22041
>emb|Z25860.1|FPGHMT2 Flaveria pringlei mRNA for glycine hydroxymethyltransferase Length = 1779 Score = 101 bits (51), Expect = 3e-18 Identities = 81/91 (89%) Strand = Plus / Minus Query: 220 agttcttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcatatt 279 |||| ||||| |||||||| |||||||| || |||||||||||||||||||| ||||| | Sbjct: 1576 agtttttgtatttcatggtttctttctcaaacccgattgttgggaattgtttggcatact 1517 Query: 280 cctccacatcgtggcgaagctttgcaatttc 310 ||||||| |||||||| ||||||| |||||| Sbjct: 1516 cctccacgtcgtggcgtagctttgaaatttc 1486 Score = 97.6 bits (49), Expect = 5e-17 Identities = 133/161 (82%) Strand = Plus / Minus Query: 438 tcctcctcaacaaatcctcttgatgtaagcgcgggggttcccatcctgatgcctccgggt 497 ||||| ||||||||||| || || || || || ||||||||||| |||||||| || || Sbjct: 1361 tcctcttcaacaaatcccctagaagtgagagcaggggttcccattctgatgccaccagga 1302 Query: 498 accatagctgaaacatcaccaggaacagtgttcttgtttgctgcaatatgcacattttct 557 ||||| || || |||||||||||||||||||| || || |||||||| || ||| ||| Sbjct: 1301 accatggcagacacatcaccaggaacagtgtttttattggctgcaatgtgaacagcttcc 1242 Query: 558 aaaaccttctccactcttgaaccatctattccctttttctt 598 || ||||| || || ||||||||||| |||||||| ||||| Sbjct: 1241 aacaccttttcaacccttgaaccatcaattcccttattctt 1201
>emb|Z25859.1|FPGHMT1 Flaveria pringlei mRNA for glycine hydroxymethyltransferase Length = 1746 Score = 97.6 bits (49), Expect = 5e-17 Identities = 178/221 (80%) Strand = Plus / Minus Query: 422 ggcaaccttggcgaagtcctcctcaacaaatcctcttgatgtaagcgcgggggttcccat 481 |||||| || || |||||||| ||||||||||| || || || || || ||||||||||| Sbjct: 1386 ggcaactttagcaaagtcctcttcaacaaatcccctagaggtgagagcaggggttcccat 1327 Query: 482 cctgatgcctccgggtaccatagctgaaacatcaccaggaacagtgttcttgtttgctgc 541 |||||||| || || ||||| || || |||||||||||||||||||| || || ||||| Sbjct: 1326 tctgatgccaccaggaaccatggcagagacatcaccaggaacagtgtttttattggctgc 1267 Query: 542 aatatgcacattttctaaaaccttctccactcttgaaccatctattccctttttcttgag 601 ||| || ||| || || ||||| || || |||||||||| |||||||| || || | Sbjct: 1266 aatgtgaacagcctccaacaccttttcaacctttgaaccatcaattcccttatttttcaa 1207 Query: 602 gttcaccaaaactaaatggttatcagtcccaccagagacaa 642 || ||||||||||| ||||| || || |||||||| |||| Sbjct: 1206 attaaccaaaactaagtggttctctgttccaccagaaacaa 1166 Score = 95.6 bits (48), Expect = 2e-16 Identities = 90/104 (86%) Strand = Plus / Minus Query: 217 cttagttcttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcat 276 ||||||| ||||| |||||||| |||||||| ||||||||||| ||||||||||| || | Sbjct: 1588 cttagtttttgtatttcatggtttctttctcaaatccgattgtcgggaattgtttcgcgt 1529 Query: 277 attcctccacatcgtggcgaagctttgcaatttcagcttggatg 320 |||||||||| || ||||| ||||||| ||||| | ||||||| Sbjct: 1528 attcctccacgtcatggcgtagctttgagatttctgattggatg 1485
>gb|DQ139269.1| Medicago truncatula serine hydroxymethyltransferase mRNA, complete cds Length = 1524 Score = 87.7 bits (44), Expect = 5e-14 Identities = 175/216 (81%), Gaps = 2/216 (0%) Strand = Plus / Minus Query: 441 tcctcaacaaatcctcttgatgtaagcgcgggggttcccatcctgatgcctccgggtacc 500 ||||||||||| || || |||||||| || || |||||||| ||||| ||||| || ||| Sbjct: 1301 tcctcaacaaaacccctagatgtaagagcaggagttcccattctgatccctccaggaacc 1242 Query: 501 atagctgaaacatcaccaggaacagtgttcttgtttgctgcaatatgcacattttctaaa 560 || || || ||||| || ||||||||||| || || || || ||||| || |||||| Sbjct: 1241 attgcagacacatctcctggaacagtgtttttattggcagctatatgaactgattctaac 1182 Query: 561 accttctccactcttgaaccatctattccctt-tttcttgaggttcaccaaaactaaatg 619 |||||||| || ||||||||||| || ||||| |||||| | ||| ||||| || ||||| Sbjct: 1181 accttctcaacccttgaaccatcaatgcccttgtttctt-aagtttaccaacaccaaatg 1123 Query: 620 gttatcagtcccaccagagacaatgtcgtagccttt 655 ||| ||||| ||||| || |||| ||| |||||||| Sbjct: 1122 gttctcagttccacccgatacaaggtcatagccttt 1087
>gb|BT013569.1| Lycopersicon esculentum clone 132307R, mRNA sequence Length = 1923 Score = 85.7 bits (43), Expect = 2e-13 Identities = 127/155 (81%) Strand = Plus / Minus Query: 438 tcctcctcaacaaatcctcttgatgtaagcgcgggggttcccatcctgatgcctccgggt 497 |||||||||||||| ||||| || || || || ||||| ||||| | ||||| || ||| Sbjct: 1376 tcctcctcaacaaaacctctagaagtgagagctggggtgcccatgcgaatgccaccaggt 1317 Query: 498 accatagctgaaacatcaccaggaacagtgttcttgtttgctgcaatatgcacattttct 557 ||||| || || ||||||||||| ||||| ||||| || |||||||||||||| ||| Sbjct: 1316 accatggcagatacatcaccaggcacagtattcttattggctgcaatatgcaccgactct 1257 Query: 558 aaaaccttctccactcttgaaccatctattccctt 592 ||||||||||| ||||| || ||||| || ||||| Sbjct: 1256 aaaaccttctcaactctagatccatcaataccctt 1222 Score = 44.1 bits (22), Expect = 0.65 Identities = 52/62 (83%) Strand = Plus / Minus Query: 222 ttcttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcatattcc 281 |||||||| ||||| || ||||||||||| || | || ||||||||||| ||||| ||| Sbjct: 1592 ttcttgtatttcattgtttctttctcgaaaccaacagtagggaattgtttggcatagtcc 1533 Query: 282 tc 283 || Sbjct: 1532 tc 1531
>emb|Z25863.1|STGHMT S.tuberosum mRNA for glycine hydroxymethyltransferase Length = 1745 Score = 81.8 bits (41), Expect = 3e-12 Identities = 137/169 (81%) Strand = Plus / Minus Query: 474 gttcccatcctgatgcctccgggtaccatagctgaaacatcaccaggaacagtgttcttg 533 |||||||| |||||||| || || ||||| || || ||||| |||||||| ||||||||| Sbjct: 1306 gttcccattctgatgccaccagggaccatggcagatacatctccaggaacggtgttcttg 1247 Query: 534 tttgctgcaatatgcacattttctaaaaccttctccactcttgaaccatctattcccttt 593 || ||||||||||| ||| ||| || || || || || || |||||||| || ||||| Sbjct: 1246 ttggctgcaatatgtacagcttccaagactttttcaaccctggaaccatcaatacccttg 1187 Query: 594 ttcttgaggttcaccaaaactaaatggttatcagtcccaccagagacaa 642 || || | |||||||||||| || || ||||| || || |||||||||| Sbjct: 1186 tttttcatgttcaccaaaaccaagtgattatcggttcctccagagacaa 1138 Score = 79.8 bits (40), Expect = 1e-11 Identities = 82/96 (85%) Strand = Plus / Minus Query: 217 cttagttcttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcat 276 ||||||| |||||||||||||| |||||||| || || ||||| ||||| || || |||| Sbjct: 1563 cttagtttttgtacttcatggtttctttctcaaacccaattgtagggaactgcttagcat 1504 Query: 277 attcctccacatcgtggcgaagctttgcaatttcag 312 | ||||||||||| || || || ||||||||||||| Sbjct: 1503 actcctccacatcatgacggagttttgcaatttcag 1468 Score = 44.1 bits (22), Expect = 0.65 Identities = 47/54 (87%), Gaps = 1/54 (1%) Strand = Plus / Minus Query: 684 gagttgctcataacttgctcttgataagctcggtactcctggagtagttgcctg 737 |||||||| | |||||||||||| ||||||| ||| | |||||||||| ||||| Sbjct: 1096 gagttgctgagaacttgctcttggtaagctctgta-ttctggagtagtggcctg 1044
>ref|NM_119954.2| Arabidopsis thaliana SHM1 (SERINE HYDROXYMETHYLTRANSFERASE 1); glycine hydroxymethyltransferase AT4G37930 (SHM1) mRNA, complete cds Length = 1822 Score = 79.8 bits (40), Expect = 1e-11 Identities = 184/232 (79%) Strand = Plus / Minus Query: 411 tcgaagaattcggcaaccttggcgaagtcctcctcaacaaatcctcttgatgtaagcgcg 470 |||||| |||| || || ||||| ||||| ||||||||||| ||||| || || || || Sbjct: 1484 tcgaagtattcagctactttggcaaagtcttcctcaacaaagcctctggaagtgagagca 1425 Query: 471 ggggttcccatcctgatgcctccgggtaccatagctgaaacatcaccaggaacagtgttc 530 || || ||||| ||||| || || || ||||| || |||||||| |||||||||||||| Sbjct: 1424 ggagtacccattctgattccaccaggaaccatggcagaaacatctccaggaacagtgttt 1365 Query: 531 ttgtttgctgcaatatgcacattttctaaaaccttctccactcttgaaccatctattccc 590 ||||| | |||||| || ||| ||| || || ||||| ||||| || ||||| |||||| Sbjct: 1364 ttgttggatgcaatgtgaacagcttccaacactttctcaactctagatccatcaattccc 1305 Query: 591 tttttcttgaggttcaccaaaactaaatggttatcagtcccaccagagacaa 642 || ||| || ||||| | ||| | |||||| ||||| |||||||| |||| Sbjct: 1304 ttgggctttagattcactagaaccagatggttgtcagttccaccagaaacaa 1253 Score = 63.9 bits (32), Expect = 7e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 218 ttagttcttgtacttcatggtctctttctcgaatccgattgttgggaa 265 ||||||||||||||||||||| |||||||| || || ||||||||||| Sbjct: 1677 ttagttcttgtacttcatggtttctttctcaaacccaattgttgggaa 1630
>emb|AJ271726.1|ATH271726 Arabidopsis thaliana mRNA for serine hydroxymethyl transferase (shm1 gene) Length = 1797 Score = 79.8 bits (40), Expect = 1e-11 Identities = 184/232 (79%) Strand = Plus / Minus Query: 411 tcgaagaattcggcaaccttggcgaagtcctcctcaacaaatcctcttgatgtaagcgcg 470 |||||| |||| || || ||||| ||||| ||||||||||| ||||| || || || || Sbjct: 1460 tcgaagtattcagctactttggcaaagtcttcctcaacaaagcctctggaagtgagagca 1401 Query: 471 ggggttcccatcctgatgcctccgggtaccatagctgaaacatcaccaggaacagtgttc 530 || || ||||| ||||| || || || ||||| || |||||||| |||||||||||||| Sbjct: 1400 ggagtacccattctgattccaccaggaaccatggcagaaacatctccaggaacagtgttt 1341 Query: 531 ttgtttgctgcaatatgcacattttctaaaaccttctccactcttgaaccatctattccc 590 ||||| | |||||| || ||| ||| || || ||||| ||||| || ||||| |||||| Sbjct: 1340 ttgttggatgcaatgtgaacagcttccaacactttctcaactctagatccatcaattccc 1281 Query: 591 tttttcttgaggttcaccaaaactaaatggttatcagtcccaccagagacaa 642 || ||| || ||||| | ||| | |||||| ||||| |||||||| |||| Sbjct: 1280 ttgggctttagattcactagaaccagatggttgtcagttccaccagaaacaa 1229 Score = 63.9 bits (32), Expect = 7e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 218 ttagttcttgtacttcatggtctctttctcgaatccgattgttgggaa 265 ||||||||||||||||||||| |||||||| || || ||||||||||| Sbjct: 1653 ttagttcttgtacttcatggtttctttctcaaacccaattgttgggaa 1606
>gb|AY070726.1| Arabidopsis thaliana AT4g37930/F20D10_50 mRNA, complete cds Length = 1775 Score = 79.8 bits (40), Expect = 1e-11 Identities = 184/232 (79%) Strand = Plus / Minus Query: 411 tcgaagaattcggcaaccttggcgaagtcctcctcaacaaatcctcttgatgtaagcgcg 470 |||||| |||| || || ||||| ||||| ||||||||||| ||||| || || || || Sbjct: 1468 tcgaagtattcagctactttggcaaagtcttcctcaacaaagcctctggaagtgagagca 1409 Query: 471 ggggttcccatcctgatgcctccgggtaccatagctgaaacatcaccaggaacagtgttc 530 || || ||||| ||||| || || || ||||| || |||||||| |||||||||||||| Sbjct: 1408 ggagtacccattctgattccaccaggaaccatggcagaaacatctccaggaacagtgttt 1349 Query: 531 ttgtttgctgcaatatgcacattttctaaaaccttctccactcttgaaccatctattccc 590 ||||| | |||||| || ||| ||| || || ||||| ||||| || ||||| |||||| Sbjct: 1348 ttgttggatgcaatgtgaacagcttccaacactttctcaactctagatccatcaattccc 1289 Query: 591 tttttcttgaggttcaccaaaactaaatggttatcagtcccaccagagacaa 642 || ||| || ||||| | ||| | |||||| ||||| |||||||| |||| Sbjct: 1288 ttgggctttagattcactagaaccagatggttgtcagttccaccagaaacaa 1237 Score = 63.9 bits (32), Expect = 7e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 218 ttagttcttgtacttcatggtctctttctcgaatccgattgttgggaa 265 ||||||||||||||||||||| |||||||| || || ||||||||||| Sbjct: 1661 ttagttcttgtacttcatggtttctttctcaaacccaattgttgggaa 1614
>gb|AY057645.1| Arabidopsis thaliana AT4g37930/F20D10_50 mRNA, complete cds Length = 1716 Score = 79.8 bits (40), Expect = 1e-11 Identities = 184/232 (79%) Strand = Plus / Minus Query: 411 tcgaagaattcggcaaccttggcgaagtcctcctcaacaaatcctcttgatgtaagcgcg 470 |||||| |||| || || ||||| ||||| ||||||||||| ||||| || || || || Sbjct: 1414 tcgaagtattcagctactttggcaaagtcttcctcaacaaagcctctggaagtgagagca 1355 Query: 471 ggggttcccatcctgatgcctccgggtaccatagctgaaacatcaccaggaacagtgttc 530 || || ||||| ||||| || || || ||||| || |||||||| |||||||||||||| Sbjct: 1354 ggagtacccattctgattccaccaggaaccatggcagaaacatctccaggaacagtgttt 1295 Query: 531 ttgtttgctgcaatatgcacattttctaaaaccttctccactcttgaaccatctattccc 590 ||||| | |||||| || ||| ||| || || ||||| ||||| || ||||| |||||| Sbjct: 1294 ttgttggatgcaatgtgaacagcttccaacactttctcaactctagatccatcaattccc 1235 Query: 591 tttttcttgaggttcaccaaaactaaatggttatcagtcccaccagagacaa 642 || ||| || ||||| | ||| | |||||| ||||| |||||||| |||| Sbjct: 1234 ttgggctttagattcactagaaccagatggttgtcagttccaccagaaacaa 1183 Score = 63.9 bits (32), Expect = 7e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 218 ttagttcttgtacttcatggtctctttctcgaatccgattgttgggaa 265 ||||||||||||||||||||| |||||||| || || ||||||||||| Sbjct: 1607 ttagttcttgtacttcatggtttctttctcaaacccaattgttgggaa 1560
>gb|AF428388.1|AF428388 Arabidopsis thaliana AT4g37930/F20D10_50 mRNA, complete cds Length = 1730 Score = 79.8 bits (40), Expect = 1e-11 Identities = 184/232 (79%) Strand = Plus / Minus Query: 411 tcgaagaattcggcaaccttggcgaagtcctcctcaacaaatcctcttgatgtaagcgcg 470 |||||| |||| || || ||||| ||||| ||||||||||| ||||| || || || || Sbjct: 1415 tcgaagtattcagctactttggcaaagtcttcctcaacaaagcctctggaagtgagagca 1356 Query: 471 ggggttcccatcctgatgcctccgggtaccatagctgaaacatcaccaggaacagtgttc 530 || || ||||| ||||| || || || ||||| || |||||||| |||||||||||||| Sbjct: 1355 ggagtacccattctgattccaccaggaaccatggcagaaacatctccaggaacagtgttt 1296 Query: 531 ttgtttgctgcaatatgcacattttctaaaaccttctccactcttgaaccatctattccc 590 ||||| | |||||| || ||| ||| || || ||||| ||||| || ||||| |||||| Sbjct: 1295 ttgttggatgcaatgtgaacagcttccaacactttctcaactctagatccatcaattccc 1236 Query: 591 tttttcttgaggttcaccaaaactaaatggttatcagtcccaccagagacaa 642 || ||| || ||||| | ||| | |||||| ||||| |||||||| |||| Sbjct: 1235 ttgggctttagattcactagaaccagatggttgtcagttccaccagaaacaa 1184 Score = 63.9 bits (32), Expect = 7e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 218 ttagttcttgtacttcatggtctctttctcgaatccgattgttgggaa 265 ||||||||||||||||||||| |||||||| || || ||||||||||| Sbjct: 1608 ttagttcttgtacttcatggtttctttctcaaacccaattgttgggaa 1561
>gb|AY054254.1| Arabidopsis thaliana AT4g37930/F20D10_50 mRNA, complete cds Length = 1770 Score = 79.8 bits (40), Expect = 1e-11 Identities = 184/232 (79%) Strand = Plus / Minus Query: 411 tcgaagaattcggcaaccttggcgaagtcctcctcaacaaatcctcttgatgtaagcgcg 470 |||||| |||| || || ||||| ||||| ||||||||||| ||||| || || || || Sbjct: 1468 tcgaagtattcagctactttggcaaagtcttcctcaacaaagcctctggaagtgagagca 1409 Query: 471 ggggttcccatcctgatgcctccgggtaccatagctgaaacatcaccaggaacagtgttc 530 || || ||||| ||||| || || || ||||| || |||||||| |||||||||||||| Sbjct: 1408 ggagtacccattctgattccaccaggaaccatggcagaaacatctccaggaacagtgttt 1349 Query: 531 ttgtttgctgcaatatgcacattttctaaaaccttctccactcttgaaccatctattccc 590 ||||| | |||||| || ||| ||| || || ||||| ||||| || ||||| |||||| Sbjct: 1348 ttgttggatgcaatgtgaacagcttccaacactttctcaactctagatccatcaattccc 1289 Query: 591 tttttcttgaggttcaccaaaactaaatggttatcagtcccaccagagacaa 642 || ||| || ||||| | ||| | |||||| ||||| |||||||| |||| Sbjct: 1288 ttgggctttagattcactagaaccagatggttgtcagttccaccagaaacaa 1237 Score = 63.9 bits (32), Expect = 7e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 218 ttagttcttgtacttcatggtctctttctcgaatccgattgttgggaa 265 ||||||||||||||||||||| |||||||| || || ||||||||||| Sbjct: 1661 ttagttcttgtacttcatggtttctttctcaaacccaattgttgggaa 1614
>gb|BT006353.1| Arabidopsis thaliana At4g37930/F20D10_50 gene, complete cds Length = 1554 Score = 79.8 bits (40), Expect = 1e-11 Identities = 184/232 (79%) Strand = Plus / Minus Query: 411 tcgaagaattcggcaaccttggcgaagtcctcctcaacaaatcctcttgatgtaagcgcg 470 |||||| |||| || || ||||| ||||| ||||||||||| ||||| || || || || Sbjct: 1361 tcgaagtattcagctactttggcaaagtcttcctcaacaaagcctctggaagtgagagca 1302 Query: 471 ggggttcccatcctgatgcctccgggtaccatagctgaaacatcaccaggaacagtgttc 530 || || ||||| ||||| || || || ||||| || |||||||| |||||||||||||| Sbjct: 1301 ggagtacccattctgattccaccaggaaccatggcagaaacatctccaggaacagtgttt 1242 Query: 531 ttgtttgctgcaatatgcacattttctaaaaccttctccactcttgaaccatctattccc 590 ||||| | |||||| || ||| ||| || || ||||| ||||| || ||||| |||||| Sbjct: 1241 ttgttggatgcaatgtgaacagcttccaacactttctcaactctagatccatcaattccc 1182 Query: 591 tttttcttgaggttcaccaaaactaaatggttatcagtcccaccagagacaa 642 || ||| || ||||| | ||| | |||||| ||||| |||||||| |||| Sbjct: 1181 ttgggctttagattcactagaaccagatggttgtcagttccaccagaaacaa 1130 Score = 63.9 bits (32), Expect = 7e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 218 ttagttcttgtacttcatggtctctttctcgaatccgattgttgggaa 265 ||||||||||||||||||||| |||||||| || || ||||||||||| Sbjct: 1554 ttagttcttgtacttcatggtttctttctcaaacccaattgttgggaa 1507
>emb|BX828432.1|CNS0A3VV Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH89ZH08 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1771 Score = 79.8 bits (40), Expect = 1e-11 Identities = 184/232 (79%) Strand = Plus / Minus Query: 411 tcgaagaattcggcaaccttggcgaagtcctcctcaacaaatcctcttgatgtaagcgcg 470 |||||| |||| || || ||||| ||||| ||||||||||| ||||| || || || || Sbjct: 1457 tcgaagtattcagctactttggcaaagtcttcctcaacaaagcctctggaagtgagagca 1398 Query: 471 ggggttcccatcctgatgcctccgggtaccatagctgaaacatcaccaggaacagtgttc 530 || || ||||| ||||| || || || ||||| || |||||||| |||||||||||||| Sbjct: 1397 ggagtacccattctgattccaccaggaaccatggcagaaacatctccaggaacagtgttt 1338 Query: 531 ttgtttgctgcaatatgcacattttctaaaaccttctccactcttgaaccatctattccc 590 ||||| | |||||| || ||| ||| || || ||||| ||||| || ||||| |||||| Sbjct: 1337 ttgttggatgcaatgtgaacagcttccaacactttctcaactctagatccatcaattccc 1278 Query: 591 tttttcttgaggttcaccaaaactaaatggttatcagtcccaccagagacaa 642 || ||| || ||||| | ||| | |||||| ||||| |||||||| |||| Sbjct: 1277 ttgggctttagattcactagaaccagatggttgtcagttccaccagaaacaa 1226 Score = 63.9 bits (32), Expect = 7e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 218 ttagttcttgtacttcatggtctctttctcgaatccgattgttgggaa 265 ||||||||||||||||||||| |||||||| || || ||||||||||| Sbjct: 1650 ttagttcttgtacttcatggtttctttctcaaacccaattgttgggaa 1603
>gb|AY089107.1| Arabidopsis thaliana clone 33799 mRNA, complete sequence Length = 1725 Score = 79.8 bits (40), Expect = 1e-11 Identities = 184/232 (79%) Strand = Plus / Minus Query: 411 tcgaagaattcggcaaccttggcgaagtcctcctcaacaaatcctcttgatgtaagcgcg 470 |||||| |||| || || ||||| ||||| ||||||||||| ||||| || || || || Sbjct: 1423 tcgaagtattcagctactttggcaaagtcttcctcaacaaagcctctggaagtgagagca 1364 Query: 471 ggggttcccatcctgatgcctccgggtaccatagctgaaacatcaccaggaacagtgttc 530 || || ||||| ||||| || || || ||||| || |||||||| |||||||||||||| Sbjct: 1363 ggagtacccattctgattccaccaggaaccatggcagaaacatctccaggaacagtgttt 1304 Query: 531 ttgtttgctgcaatatgcacattttctaaaaccttctccactcttgaaccatctattccc 590 ||||| | |||||| || ||| ||| || || ||||| ||||| || ||||| |||||| Sbjct: 1303 ttgttggatgcaatgtgaacagcttccaacactttctcaactctagatccatcaattccc 1244 Query: 591 tttttcttgaggttcaccaaaactaaatggttatcagtcccaccagagacaa 642 || ||| || ||||| | ||| | |||||| ||||| |||||||| |||| Sbjct: 1243 ttgggctttagattcactagaaccagatggttgtcagttccaccagaaacaa 1192 Score = 63.9 bits (32), Expect = 7e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 218 ttagttcttgtacttcatggtctctttctcgaatccgattgttgggaa 265 ||||||||||||||||||||| |||||||| || || ||||||||||| Sbjct: 1616 ttagttcttgtacttcatggtttctttctcaaacccaattgttgggaa 1569
>gb|AY387483.1| Oryza sativa (japonica cultivar-group) BAC OSJNBa0084L17, complete sequence Length = 159661 Score = 75.8 bits (38), Expect = 2e-10 Identities = 60/66 (90%), Gaps = 1/66 (1%) Strand = Plus / Plus Query: 672 gcaaatctagcagagttgctcataacttgctcttgataagctcggtactcctggagtagt 731 |||||| | ||| |||| ||||||||||||||||||||||||| ||||||| |||||||| Sbjct: 432 gcaaattttgcacagttactcataacttgctcttgataagctctgtactcc-ggagtagt 490 Query: 732 tgcctg 737 |||||| Sbjct: 491 tgcctg 496 Score = 73.8 bits (37), Expect = 7e-10 Identities = 55/61 (90%) Strand = Plus / Plus Query: 595 tcttgaggttcaccaaaactaaatggttatcagtcccaccagagacaatgtcgtagcctt 654 ||||||| || ||||| ||||||||||| ||||||||||||||||||| |||||||||| Sbjct: 148 tcttgagatttaccaacactaaatggttgtcagtcccaccagagacaagttcgtagcctt 207 Query: 655 t 655 | Sbjct: 208 t 208
>emb|AL161592.2|ATCHRIV88 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 88 Length = 198493 Score = 63.9 bits (32), Expect = 7e-07 Identities = 44/48 (91%) Strand = Plus / Plus Query: 218 ttagttcttgtacttcatggtctctttctcgaatccgattgttgggaa 265 ||||||||||||||||||||| |||||||| || || ||||||||||| Sbjct: 134324 ttagttcttgtacttcatggtttctttctcaaacccaattgttgggaa 134371 Score = 54.0 bits (27), Expect = 7e-04 Identities = 93/115 (80%) Strand = Plus / Plus Query: 477 cccatcctgatgcctccgggtaccatagctgaaacatcaccaggaacagtgttcttgttt 536 ||||| ||||| || || || ||||| || |||||||| |||||||||||||| ||||| Sbjct: 134747 cccattctgattccaccaggaaccatggcagaaacatctccaggaacagtgtttttgttg 134806 Query: 537 gctgcaatatgcacattttctaaaaccttctccactcttgaaccatctattccct 591 | |||||| || ||| ||| || || ||||| ||||| || ||||| ||||||| Sbjct: 134807 gatgcaatgtgaacagcttccaacactttctcaactctagatccatcaattccct 134861
>emb|AL035538.1|ATF20D10 Arabidopsis thaliana DNA chromosome 4, BAC clone F20D10 (ESSA project) Length = 147215 Score = 63.9 bits (32), Expect = 7e-07 Identities = 44/48 (91%) Strand = Plus / Plus Query: 218 ttagttcttgtacttcatggtctctttctcgaatccgattgttgggaa 265 ||||||||||||||||||||| |||||||| || || ||||||||||| Sbjct: 19909 ttagttcttgtacttcatggtttctttctcaaacccaattgttgggaa 19956 Score = 54.0 bits (27), Expect = 7e-04 Identities = 93/115 (80%) Strand = Plus / Plus Query: 477 cccatcctgatgcctccgggtaccatagctgaaacatcaccaggaacagtgttcttgttt 536 ||||| ||||| || || || ||||| || |||||||| |||||||||||||| ||||| Sbjct: 20332 cccattctgattccaccaggaaccatggcagaaacatctccaggaacagtgtttttgttg 20391 Query: 537 gctgcaatatgcacattttctaaaaccttctccactcttgaaccatctattccct 591 | |||||| || ||| ||| || || ||||| ||||| || ||||| ||||||| Sbjct: 20392 gatgcaatgtgaacagcttccaacactttctcaactctagatccatcaattccct 20446
>dbj|AP004579.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT11E23, TM0557 Length = 87695 Score = 61.9 bits (31), Expect = 3e-06 Identities = 70/83 (84%) Strand = Plus / Minus Query: 225 ttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcatattcctcc 284 ||||||||||| || | ||||| || || || ||||| || ||||| ||||| ||||| Sbjct: 7579 ttgtacttcattgttgccttctcaaaaccaatggttggaaactgtttcgcatactcctca 7520 Query: 285 acatcgtggcgaagctttgcaat 307 ||||||||||||||||||||||| Sbjct: 7519 acatcgtggcgaagctttgcaat 7497 Score = 48.1 bits (24), Expect = 0.042 Identities = 57/68 (83%) Strand = Plus / Minus Query: 477 cccatcctgatgcctccgggtaccatagctgaaacatcaccaggaacagtgttcttgttt 536 ||||||| |||||| || || |||||||| || ||||| || ||||| ||||| || ||| Sbjct: 7111 cccatccggatgccaccaggaaccatagcagacacatctcccggaacggtgtttttattt 7052 Query: 537 gctgcaat 544 |||||||| Sbjct: 7051 gctgcaat 7044
>dbj|AP004578.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT17H01, TM0541, complete sequence Length = 110985 Score = 61.9 bits (31), Expect = 3e-06 Identities = 70/83 (84%) Strand = Plus / Minus Query: 225 ttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcatattcctcc 284 ||||||||||| || | ||||| || || || ||||| || ||||| ||||| ||||| Sbjct: 95182 ttgtacttcattgttgccttctcaaaaccaatggttggaaactgtttcgcatactcctca 95123 Query: 285 acatcgtggcgaagctttgcaat 307 ||||||||||||||||||||||| Sbjct: 95122 acatcgtggcgaagctttgcaat 95100 Score = 48.1 bits (24), Expect = 0.042 Identities = 57/68 (83%) Strand = Plus / Minus Query: 477 cccatcctgatgcctccgggtaccatagctgaaacatcaccaggaacagtgttcttgttt 536 ||||||| |||||| || || |||||||| || ||||| || ||||| ||||| || ||| Sbjct: 94714 cccatccggatgccaccaggaaccatagcagacacatctcccggaacggtgtttttattt 94655 Query: 537 gctgcaat 544 |||||||| Sbjct: 94654 gctgcaat 94647
>gb|AC126010.13| Medicago truncatula clone mth2-20e4, complete sequence Length = 113964 Score = 54.0 bits (27), Expect = 7e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 477 cccatcctgatgcctccgggtaccatagctgaaacatcaccaggaacagtgttcttgttt 536 ||||||||||| || || || |||||||| || ||||| || ||||||||||| || || Sbjct: 58327 cccatcctgataccaccaggaaccatagcagacacatctcctggaacagtgtttttatta 58268 Query: 537 gctgcaatatg 547 ||||||||||| Sbjct: 58267 gctgcaatatg 58257 Score = 54.0 bits (27), Expect = 7e-04 Identities = 57/67 (85%) Strand = Plus / Minus Query: 589 cctttttcttgaggttcaccaaaactaaatggttatcagtcccaccagagacaatgtcgt 648 |||| ||||| || ||||||||||||| ||| || |||||||||||||| |||| || | Sbjct: 58000 ccttgttcttaagattcaccaaaactagatgattctcagtcccaccagaaacaagctcat 57941 Query: 649 agccttt 655 ||||||| Sbjct: 57940 agccttt 57934 Score = 44.1 bits (22), Expect = 0.65 Identities = 31/34 (91%) Strand = Plus / Minus Query: 433 cgaagtcctcctcaacaaatcctcttgatgtaag 466 |||| ||||||||||||||||| ||||| ||||| Sbjct: 58456 cgaaatcctcctcaacaaatccccttgaagtaag 58423
>gb|AF416481.1|AF416481 Cicer arietinum hydroxymethyl transferase mRNA, partial cds Length = 284 Score = 46.1 bits (23), Expect = 0.17 Identities = 50/59 (84%) Strand = Plus / Minus Query: 225 ttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcatattcctc 283 |||||||||||||| |||| || || || || ||||| |||||||||||| ||||||| Sbjct: 68 ttgtacttcatggttgctttttcaaaaccaatggttggaaattgttttgcaaattcctc 10
>emb|CR962125.2| Medicago truncatula chromosome 5 clone mth2-179a9, COMPLETE SEQUENCE Length = 113972 Score = 46.1 bits (23), Expect = 0.17 Identities = 86/107 (80%) Strand = Plus / Minus Query: 477 cccatcctgatgcctccgggtaccatagctgaaacatcaccaggaacagtgttcttgttt 536 ||||| ||||| ||||| || ||||| || || ||||| || ||||||||||| || || Sbjct: 22562 cccattctgatccctccaggaaccattgcagacacatctcctggaacagtgtttttattg 22503 Query: 537 gctgcaatatgcacattttctaaaaccttctccactcttgaaccatc 583 || || ||||| || |||||| |||||||| || ||||||||||| Sbjct: 22502 gcagctatatgaactgattctaacaccttctcaacccttgaaccatc 22456
>ref|XM_706590.1| Candida albicans SC5314 hypothetical protein (SHM1) partial mRNA Length = 1482 Score = 44.1 bits (22), Expect = 0.65 Identities = 28/30 (93%) Strand = Plus / Minus Query: 503 agctgaaacatcaccaggaacagtgttctt 532 |||||| |||||||||||||| |||||||| Sbjct: 1221 agctgatacatcaccaggaacggtgttctt 1192
>gb|AC129335.4| Mus musculus BAC clone RP23-109H7 from chromosome 1, complete sequence Length = 201274 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Minus Query: 379 ctttaaccttcaaagccaagtt 400 |||||||||||||||||||||| Sbjct: 32135 ctttaaccttcaaagccaagtt 32114
>ref|XM_883849.1| Candida albicans SC5314 hypothetical protein (CaJ7.0385) partial mRNA Length = 1482 Score = 44.1 bits (22), Expect = 0.65 Identities = 28/30 (93%) Strand = Plus / Minus Query: 503 agctgaaacatcaccaggaacagtgttctt 532 |||||| |||||||||||||| |||||||| Sbjct: 1221 agctgatacatcaccaggaacggtgttctt 1192
>gb|AC164169.8| Mus musculus 6 BAC RP23-413M4 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 209149 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Plus Query: 174 ttgtgcttcctgtttgcttcct 195 |||||||||||||||||||||| Sbjct: 194735 ttgtgcttcctgtttgcttcct 194756
>gb|AC153848.5| Mus musculus 6 BAC RP23-111L15 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 187830 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Plus Query: 174 ttgtgcttcctgtttgcttcct 195 |||||||||||||||||||||| Sbjct: 54206 ttgtgcttcctgtttgcttcct 54227
>dbj|AP006852.1| Candida albicans genomic DNA, chromosome 7, complete sequence Length = 949626 Score = 44.1 bits (22), Expect = 0.65 Identities = 28/30 (93%) Strand = Plus / Plus Query: 503 agctgaaacatcaccaggaacagtgttctt 532 |||||| |||||||||||||| |||||||| Sbjct: 736359 agctgatacatcaccaggaacggtgttctt 736388
>gb|AC113269.13| Mus musculus chromosome 15, clone RP23-372F2, complete sequence Length = 202155 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 177 tgcttcctgtttgcttccttgctgt 201 |||||||||||||||||| |||||| Sbjct: 70853 tgcttcctgtttgcttccgtgctgt 70877
>emb|AL121870.9|HSB166C10 Human DNA sequence from clone RP13-166C10 on chromosome Xq21.1-21.3, complete sequence Length = 122049 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 307 tttcagcttggatgttgctgt 327 ||||||||||||||||||||| Sbjct: 104450 tttcagcttggatgttgctgt 104470
>emb|AL031985.10|HS228H13 Human DNA sequence from clone RP1-228H13 on chromosome 1p34.1-35.3 Contains the gene for a novel protein, a ribosomal protein L21 (RPL21), a ribosomal protein L10a (RPL10A) and the gene for a novel zinc finger protein, complete sequence Length = 139737 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 175 tgtgcttcctgtttgcttcct 195 ||||||||||||||||||||| Sbjct: 105621 tgtgcttcctgtttgcttcct 105601
>gb|AC087878.7| Homo sapiens chromosome 15, clone RP11-62C7, complete sequence Length = 166485 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 606 accaaaactaaatggttatca 626 ||||||||||||||||||||| Sbjct: 122980 accaaaactaaatggttatca 122960
>gb|AC012077.4|AC012077 Homo sapiens BAC clone RP11-524G14 from Y, complete sequence Length = 209287 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 307 tttcagcttggatgttgctgt 327 ||||||||||||||||||||| Sbjct: 169390 tttcagcttggatgttgctgt 169410
>gb|AE000657.1| Aquifex aeolicus VF5, complete genome Length = 1551335 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 580 catctattccctttttcttgaggtt 604 |||||||||||||||||| |||||| Sbjct: 1385562 catctattccctttttctggaggtt 1385538 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,052,886 Number of Sequences: 3902068 Number of extensions: 7052886 Number of successful extensions: 165533 Number of sequences better than 10.0: 55 Number of HSP's better than 10.0 without gapping: 54 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 165248 Number of HSP's gapped (non-prelim): 248 length of query: 743 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 720 effective length of database: 17,143,297,704 effective search space: 12343174346880 effective search space used: 12343174346880 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)
