ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal12l09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MLH3_HUMAN (Q9UHC1) DNA mismatch repair protein Mlh3 (MutL prote... 30 6.9
2RISA_BUCAI (P57212) Riboflavin synthase alpha chain (EC 2.5.1.9) 29 9.0

>MLH3_HUMAN (Q9UHC1) DNA mismatch repair protein Mlh3 (MutL protein homolog 3)|
          Length = 1453

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +1

Query: 424 ELSRTSKSNGS*IPMSTLRRSIRSKQRVMADVKCNYILNKYKMHNI 561
           ++   S+ NG  +  +TL++ + S +R      CN IL+ Y+M N+
Sbjct: 361 DIKEFSEDNGFSLFDATLQKRVTSDERSNFQEACNNILDSYEMFNL 406



to top

>RISA_BUCAI (P57212) Riboflavin synthase alpha chain (EC 2.5.1.9)|
          Length = 208

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -1

Query: 189 IEKNDDLPTTAKHEGCCLPILLCKRPVLISASLQDTKNSS 70
           + KN  L  +  H GCCL + L     +I   +Q+T  S+
Sbjct: 32  LSKNLKLGDSISHNGCCLTVKLINNSFIICDVIQETLKST 71


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,815,301
Number of Sequences: 219361
Number of extensions: 1494494
Number of successful extensions: 3489
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3489
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5216272880
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top