ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal12k13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK120958.1| Oryza sativa (japonica cultivar-group) cDNA clon... 194 2e-46
2dbj|AK065271.1| Oryza sativa (japonica cultivar-group) cDNA clon... 194 2e-46
3gb|AY111216.1| Zea mays CL3580_1 mRNA sequence 135 1e-28
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 113 5e-22
5gb|AF461424.2| Oryza sativa chromosome 3 clone OSJNBa0016B07, co... 113 5e-22
6gb|AC118669.2| Genomic sequence for Oryza sativa, Nipponbare str... 113 5e-22
7dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 113 5e-22
8gb|AC137071.3| Genomic sequence for Oryza sativa, Nipponbare str... 113 5e-22
9gb|AC006396.1| Homo sapiens PAC clone RP4-733H1 from 7, complete... 44 0.35
10gb|AC152070.4| Pan troglodytes BAC clone RP43-135N21 from chromo... 44 0.35
11emb|CR381596.11| Zebrafish DNA sequence from clone DKEY-230M3 in... 42 1.4
12ref|NM_001004874.1| Xenopus tropicalis RAN binding protein 3 (MG... 42 1.4
13gb|BC075117.1| Xenopus tropicalis RAN binding protein 3, mRNA (c... 42 1.4
14gb|AC006841.7| Arabidopsis thaliana chromosome 2 clone F3K23 map... 42 1.4
15gb|AF398203.1| Zea mays clone Tzm18 Ty1-copia type retrotranspos... 42 1.4
16dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
17dbj|AP004399.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
18dbj|AP004154.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
19emb|CR942678.2| Xenopus tropicalis finished cDNA, clone TNeu108o22 42 1.4
20emb|CR942467.2| Xenopus tropicalis finished cDNA, clone TEgg053d03 42 1.4
21gb|AE004969.1| Neisseria gonorrhoeae FA 1090, complete genome 42 1.4
22gb|AC169677.2| Mus musculus BAC clone RP23-442J18 from chromosom... 40 5.4
23gb|BC025136.1| Mus musculus zinc finger and BTB domain containin... 40 5.4
24emb|AL359474.16| Human DNA sequence from clone RP11-747O7 on chr... 40 5.4
25gb|AC133859.4| Oryza sativa chromosome 3 BAC OSJNBa0075A22 genom... 40 5.4
26gb|BC099964.1| Mus musculus cDNA clone IMAGE:30050626 40 5.4
27ref|NM_020256.1| Mus musculus zinc finger and BTB domain contain... 40 5.4
28emb|AL731595.1|OSJN00238 Oryza sativa genomic DNA, chromosome 4,... 40 5.4
29gb|AC171134.2| Helobdella robusta clone CH306-1A5, complete sequ... 40 5.4
30gb|AC084761.2| Gallus gallus clone WAG-69H2, complete sequence 40 5.4
31emb|BX546499.15| Zebrafish DNA sequence from clone DKEY-27P18 in... 40 5.4
32gb|AC117838.1| Caenorhabditis briggsae cosmid CB005E21, complete... 40 5.4
33gb|AC091814.10| Homo sapiens 12p BAC RP11-290C10 (Roswell Park C... 40 5.4
34gb|AC160141.2| Gallus gallus BAC clone CH261-182D6 from chromoso... 40 5.4
35emb|AL844155.6| Mouse DNA sequence from clone RP23-163L4 on chro... 40 5.4
36dbj|AK087417.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN f... 40 5.4
37dbj|AK089423.1| Mus musculus B6-derived CD11 +ve dendritic cells... 40 5.4
38dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.4
39emb|AL731620.2|OSJN00270 Oryza sativa genomic DNA, chromosome 4,... 40 5.4
40emb|AL731622.1|OSJN00265 Oryza sativa genomic DNA, chromosome 4,... 40 5.4
41gb|BC027146.1| Mus musculus, clone IMAGE:4947407, mRNA 40 5.4
42ref|XM_342669.2| PREDICTED: Rattus norvegicus similar to trypsin... 40 5.4
43gb|AC084288.9| Mus musculus Strain C57BL6/J Chromosome 2 BAC, RP... 40 5.4
44gb|BC040102.1| Mus musculus, clone IMAGE:4947407, mRNA 40 5.4
45emb|BX936423.12| Zebrafish DNA sequence from clone DKEY-174M14 i... 40 5.4
46gb|AF097416.1|AF097416 Mus musculus zinc finger transcription fa... 40 5.4
47gb|AC159010.2| Gallus gallus BAC clone CH261-115H16 from chromos... 40 5.4
48emb|AL824707.7| Mouse DNA sequence from clone RP23-95O1 on chrom... 40 5.4
49emb|AL512346.41| Mouse DNA sequence from clone RP23-322E15 on ch... 40 5.4
50emb|AL137062.13| Human DNA sequence from clone RP11-198M22 on ch... 40 5.4 
>dbj|AK120958.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023039J11, full
            insert sequence
          Length = 6154

 Score =  194 bits (98), Expect = 2e-46
 Identities = 219/258 (84%), Gaps = 6/258 (2%)
 Strand = Plus / Minus

                                                                        
Query: 146  ctacctgaattatctcttggcaccacagtataggctagagtaattggtgcagggctgggt 205
            |||| |||| |||||||||| ||||||| |||||  ||||||||  | || || ||||| 
Sbjct: 5919 ctacttgaagtatctcttggtaccacagaataggaaagagtaatctgcgctggactgggg 5860

                                                                        
Query: 206  actccctctt---ggaatttgacatcaaaagccacagattggtaaagacaaacttcatct 262
            ||| ||||||   ||||||||||||| || || ||||||||||||||||||||||| |||
Sbjct: 5859 actgcctcttcccggaatttgacatcgaaggcaacagattggtaaagacaaacttcgtct 5800

                                                                        
Query: 263  tctttgcagtagtaaaccttgcagttgatccttcccattgatgatgatgacgatgtcctt 322
            ||||||||||||||||||||||| |||||||||||| ||||||| ||||| ||| |||||
Sbjct: 5799 tctttgcagtagtaaaccttgcaattgatccttcccgttgatgacgatgaagatttcctt 5740

                                                                        
Query: 323  ttaaacttgagtgacgcctgcccgtctgagtttagagatccattcactggctcgatctca 382
             |  |||||||||| ||||| |   ||||||||||| | ||||| |||||||| ||||||
Sbjct: 5739 ctgtacttgagtgatgcctgtc---ctgagtttagaaaaccattaactggctctatctca 5683

                              
Query: 383  attgcattaggtggttct 400
            ||||||| || |||||||
Sbjct: 5682 attgcatcagctggttct 5665
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>dbj|AK065271.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002L03, full
            insert sequence
          Length = 3698

 Score =  194 bits (98), Expect = 2e-46
 Identities = 219/258 (84%), Gaps = 6/258 (2%)
 Strand = Plus / Minus

                                                                        
Query: 146  ctacctgaattatctcttggcaccacagtataggctagagtaattggtgcagggctgggt 205
            |||| |||| |||||||||| ||||||| |||||  ||||||||  | || || ||||| 
Sbjct: 3507 ctacttgaagtatctcttggtaccacagaataggaaagagtaatctgcgctggactgggg 3448

                                                                        
Query: 206  actccctctt---ggaatttgacatcaaaagccacagattggtaaagacaaacttcatct 262
            ||| ||||||   ||||||||||||| || || ||||||||||||||||||||||| |||
Sbjct: 3447 actgcctcttcccggaatttgacatcgaaggcaacagattggtaaagacaaacttcgtct 3388

                                                                        
Query: 263  tctttgcagtagtaaaccttgcagttgatccttcccattgatgatgatgacgatgtcctt 322
            ||||||||||||||||||||||| |||||||||||| ||||||| ||||| ||| |||||
Sbjct: 3387 tctttgcagtagtaaaccttgcaattgatccttcccgttgatgacgatgaagatttcctt 3328

                                                                        
Query: 323  ttaaacttgagtgacgcctgcccgtctgagtttagagatccattcactggctcgatctca 382
             |  |||||||||| ||||| |   ||||||||||| | ||||| |||||||| ||||||
Sbjct: 3327 ctgtacttgagtgatgcctgtc---ctgagtttagaaaaccattaactggctctatctca 3271

                              
Query: 383  attgcattaggtggttct 400
            ||||||| || |||||||
Sbjct: 3270 attgcatcagctggttct 3253
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>gb|AY111216.1| Zea mays CL3580_1 mRNA sequence
          Length = 750

 Score =  135 bits (68), Expect = 1e-28
 Identities = 136/158 (86%), Gaps = 3/158 (1%)
 Strand = Plus / Plus

                                                                       
Query: 146 ctacctgaattatctcttggcaccacagtataggctagagtaattggtgcagggctgggt 205
           |||||||||||||||||||||   |||||||||| ||| |||||| |||| ||| | |||
Sbjct: 296 ctacctgaattatctcttggcgaaacagtataggatagcgtaatttgtgctgggttcggt 355

                                                                       
Query: 206 actccctctt---ggaatttgacatcaaaagccacagattggtaaagacaaacttcatct 262
            |  ||||||   ||||||||||||||||||| |  |||| ||| |||||||||||||||
Sbjct: 356 tccgcctcttcacggaatttgacatcaaaagcaatcgatttgtagagacaaacttcatct 415

                                                 
Query: 263 tctttgcagtagtaaaccttgcagttgatccttcccat 300
           ||||| |||||||||||||||||||| |||||||||||
Sbjct: 416 tctttacagtagtaaaccttgcagtttatccttcccat 453
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  113 bits (57), Expect = 5e-22
 Identities = 119/139 (85%), Gaps = 3/139 (2%)
 Strand = Plus / Minus

                                                                            
Query: 146      ctacctgaattatctcttggcaccacagtataggctagagtaattggtgcagggctgggt 205
                |||| |||| |||||||||| ||||||| |||||  ||||||||  | || || ||||| 
Sbjct: 11095302 ctacttgaagtatctcttggtaccacagaataggaaagagtaatctgcgctggactgggg 11095243

                                                                            
Query: 206      actccctctt---ggaatttgacatcaaaagccacagattggtaaagacaaacttcatct 262
                ||| ||||||   ||||||||||||| || || ||||||||||||||||||||||| |||
Sbjct: 11095242 actgcctcttcccggaatttgacatcgaaggcaacagattggtaaagacaaacttcgtct 11095183

                                   
Query: 263      tctttgcagtagtaaacct 281
                |||||||||||||||||||
Sbjct: 11095182 tctttgcagtagtaaacct 11095164



 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 104/123 (84%), Gaps = 3/123 (2%)
 Strand = Plus / Minus

                                                                            
Query: 278      accttgcagttgatccttcccattgatgatgatgacgatgtccttttaaacttgagtgac 337
                |||||||| |||||||||||| ||||||| ||||| ||| ||||| |  |||||||||| 
Sbjct: 11094781 accttgcaattgatccttcccgttgatgacgatgaagatttccttctgtacttgagtgat 11094722

                                                                            
Query: 338      gcctgcccgtctgagtttagagatccattcactggctcgatctcaattgcattaggtggt 397
                ||||| |   ||||||||||| | ||||| |||||||| ||||||||||||| || ||||
Sbjct: 11094721 gcctgtc---ctgagtttagaaaaccattaactggctctatctcaattgcatcagctggt 11094665

                   
Query: 398      tct 400
                |||
Sbjct: 11094664 tct 11094662



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 300      ttgatgatgatgacgatgtc 319
                ||||||||||||||||||||
Sbjct: 25389449 ttgatgatgatgacgatgtc 25389468
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>gb|AF461424.2| Oryza sativa chromosome 3 clone OSJNBa0016B07, complete sequence
          Length = 167588

 Score =  113 bits (57), Expect = 5e-22
 Identities = 119/139 (85%), Gaps = 3/139 (2%)
 Strand = Plus / Plus

                                                                         
Query: 146   ctacctgaattatctcttggcaccacagtataggctagagtaattggtgcagggctgggt 205
             |||| |||| |||||||||| ||||||| |||||  ||||||||  | || || ||||| 
Sbjct: 37820 ctacttgaagtatctcttggtaccacagaataggaaagagtaatctgcgctggactgggg 37879

                                                                         
Query: 206   actccctctt---ggaatttgacatcaaaagccacagattggtaaagacaaacttcatct 262
             ||| ||||||   ||||||||||||| || || ||||||||||||||||||||||| |||
Sbjct: 37880 actgcctcttcccggaatttgacatcgaaggcaacagattggtaaagacaaacttcgtct 37939

                                
Query: 263   tctttgcagtagtaaacct 281
             |||||||||||||||||||
Sbjct: 37940 tctttgcagtagtaaacct 37958



 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 104/123 (84%), Gaps = 3/123 (2%)
 Strand = Plus / Plus

                                                                         
Query: 278   accttgcagttgatccttcccattgatgatgatgacgatgtccttttaaacttgagtgac 337
             |||||||| |||||||||||| ||||||| ||||| ||| ||||| |  |||||||||| 
Sbjct: 38341 accttgcaattgatccttcccgttgatgacgatgaagatttccttctgtacttgagtgat 38400

                                                                         
Query: 338   gcctgcccgtctgagtttagagatccattcactggctcgatctcaattgcattaggtggt 397
             ||||| ||   |||||||||| | ||||| |||||||| ||||||||||||| || ||||
Sbjct: 38401 gcctgtcc---tgagtttagaaaaccattaactggctctatctcaattgcatcagctggt 38457

                
Query: 398   tct 400
             |||
Sbjct: 38458 tct 38460
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>gb|AC118669.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
            OSJNBb0011G21, from chromosome 3, complete sequence
          Length = 142401

 Score =  113 bits (57), Expect = 5e-22
 Identities = 119/139 (85%), Gaps = 3/139 (2%)
 Strand = Plus / Minus

                                                                        
Query: 146  ctacctgaattatctcttggcaccacagtataggctagagtaattggtgcagggctgggt 205
            |||| |||| |||||||||| ||||||| |||||  ||||||||  | || || ||||| 
Sbjct: 8659 ctacttgaagtatctcttggtaccacagaataggaaagagtaatctgcgctggactgggg 8600

                                                                        
Query: 206  actccctctt---ggaatttgacatcaaaagccacagattggtaaagacaaacttcatct 262
            ||| ||||||   ||||||||||||| || || ||||||||||||||||||||||| |||
Sbjct: 8599 actgcctcttcccggaatttgacatcgaaggcaacagattggtaaagacaaacttcgtct 8540

                               
Query: 263  tctttgcagtagtaaacct 281
            |||||||||||||||||||
Sbjct: 8539 tctttgcagtagtaaacct 8521



 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 104/123 (84%), Gaps = 3/123 (2%)
 Strand = Plus / Minus

                                                                        
Query: 278  accttgcagttgatccttcccattgatgatgatgacgatgtccttttaaacttgagtgac 337
            |||||||| |||||||||||| ||||||| ||||| ||| ||||| |  |||||||||| 
Sbjct: 8138 accttgcaattgatccttcccgttgatgacgatgaagatttccttctgtacttgagtgat 8079

                                                                        
Query: 338  gcctgcccgtctgagtttagagatccattcactggctcgatctcaattgcattaggtggt 397
            ||||| |   ||||||||||| | ||||| |||||||| ||||||||||||| || ||||
Sbjct: 8078 gcctgtc---ctgagtttagaaaaccattaactggctctatctcaattgcatcagctggt 8022

               
Query: 398  tct 400
            |||
Sbjct: 8021 tct 8019
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  113 bits (57), Expect = 5e-22
 Identities = 119/139 (85%), Gaps = 3/139 (2%)
 Strand = Plus / Minus

                                                                            
Query: 146      ctacctgaattatctcttggcaccacagtataggctagagtaattggtgcagggctgggt 205
                |||| |||| |||||||||| ||||||| |||||  ||||||||  | || || ||||| 
Sbjct: 11092065 ctacttgaagtatctcttggtaccacagaataggaaagagtaatctgcgctggactgggg 11092006

                                                                            
Query: 206      actccctctt---ggaatttgacatcaaaagccacagattggtaaagacaaacttcatct 262
                ||| ||||||   ||||||||||||| || || ||||||||||||||||||||||| |||
Sbjct: 11092005 actgcctcttcccggaatttgacatcgaaggcaacagattggtaaagacaaacttcgtct 11091946

                                   
Query: 263      tctttgcagtagtaaacct 281
                |||||||||||||||||||
Sbjct: 11091945 tctttgcagtagtaaacct 11091927



 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 104/123 (84%), Gaps = 3/123 (2%)
 Strand = Plus / Minus

                                                                            
Query: 278      accttgcagttgatccttcccattgatgatgatgacgatgtccttttaaacttgagtgac 337
                |||||||| |||||||||||| ||||||| ||||| ||| ||||| |  |||||||||| 
Sbjct: 11091544 accttgcaattgatccttcccgttgatgacgatgaagatttccttctgtacttgagtgat 11091485

                                                                            
Query: 338      gcctgcccgtctgagtttagagatccattcactggctcgatctcaattgcattaggtggt 397
                ||||| |   ||||||||||| | ||||| |||||||| ||||||||||||| || ||||
Sbjct: 11091484 gcctgtc---ctgagtttagaaaaccattaactggctctatctcaattgcatcagctggt 11091428

                   
Query: 398      tct 400
                |||
Sbjct: 11091427 tct 11091425



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 300      ttgatgatgatgacgatgtc 319
                ||||||||||||||||||||
Sbjct: 25480758 ttgatgatgatgacgatgtc 25480777
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>gb|AC137071.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0042B10, from chromosome 3, complete sequence
          Length = 144205

 Score =  113 bits (57), Expect = 5e-22
 Identities = 119/139 (85%), Gaps = 3/139 (2%)
 Strand = Plus / Minus

                                                                          
Query: 146    ctacctgaattatctcttggcaccacagtataggctagagtaattggtgcagggctgggt 205
              |||| |||| |||||||||| ||||||| |||||  ||||||||  | || || ||||| 
Sbjct: 138787 ctacttgaagtatctcttggtaccacagaataggaaagagtaatctgcgctggactgggg 138728

                                                                          
Query: 206    actccctctt---ggaatttgacatcaaaagccacagattggtaaagacaaacttcatct 262
              ||| ||||||   ||||||||||||| || || ||||||||||||||||||||||| |||
Sbjct: 138727 actgcctcttcccggaatttgacatcgaaggcaacagattggtaaagacaaacttcgtct 138668

                                 
Query: 263    tctttgcagtagtaaacct 281
              |||||||||||||||||||
Sbjct: 138667 tctttgcagtagtaaacct 138649



 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 104/123 (84%), Gaps = 3/123 (2%)
 Strand = Plus / Minus

                                                                          
Query: 278    accttgcagttgatccttcccattgatgatgatgacgatgtccttttaaacttgagtgac 337
              |||||||| |||||||||||| ||||||| ||||| ||| ||||| |  |||||||||| 
Sbjct: 138266 accttgcaattgatccttcccgttgatgacgatgaagatttccttctgtacttgagtgat 138207

                                                                          
Query: 338    gcctgcccgtctgagtttagagatccattcactggctcgatctcaattgcattaggtggt 397
              ||||| |   ||||||||||| | ||||| |||||||| ||||||||||||| || ||||
Sbjct: 138206 gcctgtc---ctgagtttagaaaaccattaactggctctatctcaattgcatcagctggt 138150

                 
Query: 398    tct 400
              |||
Sbjct: 138149 tct 138147
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>gb|AC006396.1| Homo sapiens PAC clone RP4-733H1 from 7, complete sequence
          Length = 81854

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 251  caaacttcatcttctttgcagt 272
            ||||||||||||||||||||||
Sbjct: 4672 caaacttcatcttctttgcagt 4651
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>gb|AC152070.4| Pan troglodytes BAC clone RP43-135N21 from chromosome 7, complete
             sequence
          Length = 162075

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 251   caaacttcatcttctttgcagt 272
             ||||||||||||||||||||||
Sbjct: 45750 caaacttcatcttctttgcagt 45771
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>emb|CR381596.11| Zebrafish DNA sequence from clone DKEY-230M3 in linkage group 3,
             complete sequence
          Length = 157536

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 39    acataaactagagacaaattcacat 63
             |||| ||||||||||||||||||||
Sbjct: 95766 acatgaactagagacaaattcacat 95742
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>ref|NM_001004874.1| Xenopus tropicalis RAN binding protein 3 (MGC79798), mRNA
          Length = 2615

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 301  tgatgatgatgacgatgtcct 321
            |||||||||||||||||||||
Sbjct: 1526 tgatgatgatgacgatgtcct 1546
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>gb|BC075117.1| Xenopus tropicalis RAN binding protein 3, mRNA (cDNA clone MGC:79798
            IMAGE:6986317), complete cds
          Length = 2615

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 301  tgatgatgatgacgatgtcct 321
            |||||||||||||||||||||
Sbjct: 1526 tgatgatgatgacgatgtcct 1546
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>gb|AC006841.7| Arabidopsis thaliana chromosome 2 clone F3K23 map mi148, complete
             sequence
          Length = 125045

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 247   aagacaaacttcatcttcttt 267
             |||||||||||||||||||||
Sbjct: 86502 aagacaaacttcatcttcttt 86522
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>gb|AF398203.1| Zea mays clone Tzm18 Ty1-copia type retrotransposon reverse
           transcriptase gene, partial cds
          Length = 285

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 247 aagacaaacttcatcttcttt 267
           |||||||||||||||||||||
Sbjct: 108 aagacaaacttcatcttcttt 88
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 359      gatccattcactggctcgatc 379
                |||||||||||||||||||||
Sbjct: 23457599 gatccattcactggctcgatc 23457619
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>dbj|AP004399.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0451G12
          Length = 142182

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 359    gatccattcactggctcgatc 379
              |||||||||||||||||||||
Sbjct: 139436 gatccattcactggctcgatc 139456
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>dbj|AP004154.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1111_E05
          Length = 126978

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 359   gatccattcactggctcgatc 379
             |||||||||||||||||||||
Sbjct: 49014 gatccattcactggctcgatc 49034
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>emb|CR942678.2| Xenopus tropicalis finished cDNA, clone TNeu108o22
          Length = 988

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 301 tgatgatgatgacgatgtcct 321
           |||||||||||||||||||||
Sbjct: 356 tgatgatgatgacgatgtcct 376
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>emb|CR942467.2| Xenopus tropicalis finished cDNA, clone TEgg053d03
          Length = 2163

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 301  tgatgatgatgacgatgtcct 321
            |||||||||||||||||||||
Sbjct: 1572 tgatgatgatgacgatgtcct 1592
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>gb|AE004969.1| Neisseria gonorrhoeae FA 1090, complete genome
          Length = 2153922

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 384    ttgcattaggtggttctgttt 404
              |||||||||||||||||||||
Sbjct: 348357 ttgcattaggtggttctgttt 348377
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>gb|AC169677.2| Mus musculus BAC clone RP23-442J18 from chromosome 8, complete sequence
          Length = 225815

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 298   cattgatgatgatgacgatg 317
             ||||||||||||||||||||
Sbjct: 44419 cattgatgatgatgacgatg 44438
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>gb|BC025136.1| Mus musculus zinc finger and BTB domain containing 33, mRNA (cDNA
            clone IMAGE:3981085), containing frame-shift errors
          Length = 2249

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 301  tgatgatgatgacgatgtcctttt 324
            ||||||||||||||||||| ||||
Sbjct: 1150 tgatgatgatgacgatgtcatttt 1173
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>emb|AL359474.16| Human DNA sequence from clone RP11-747O7 on chromosome 6, complete
             sequence
          Length = 129451

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 41    ataaactagagacaaattca 60
             ||||||||||||||||||||
Sbjct: 20037 ataaactagagacaaattca 20018
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>gb|AC133859.4| Oryza sativa chromosome 3 BAC OSJNBa0075A22 genomic sequence, complete
             sequence
          Length = 152828

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 300   ttgatgatgatgacgatgtc 319
             ||||||||||||||||||||
Sbjct: 53911 ttgatgatgatgacgatgtc 53892
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>gb|BC099964.1| Mus musculus cDNA clone IMAGE:30050626
          Length = 5359

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 301  tgatgatgatgacgatgtcctttt 324
            ||||||||||||||||||| ||||
Sbjct: 4700 tgatgatgatgacgatgtcatttt 4677
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>ref|NM_020256.1| Mus musculus zinc finger and BTB domain containing 33 (Zbtb33),
           mRNA
          Length = 2583

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 301 tgatgatgatgacgatgtcctttt 324
           ||||||||||||||||||| ||||
Sbjct: 825 tgatgatgatgacgatgtcatttt 848
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>emb|AL731595.1|OSJN00238 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0041M21,
              complete sequence
          Length = 151218

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 300    ttgatgatgatgacgatgtc 319
              ||||||||||||||||||||
Sbjct: 136836 ttgatgatgatgacgatgtc 136855
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>gb|AC171134.2| Helobdella robusta clone CH306-1A5, complete sequence
          Length = 95814

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 300   ttgatgatgatgacgatgtc 319
             ||||||||||||||||||||
Sbjct: 33163 ttgatgatgatgacgatgtc 33182
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>gb|AC084761.2| Gallus gallus clone WAG-69H2, complete sequence
          Length = 135273

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 155   ttatctcttggcaccacagt 174
             ||||||||||||||||||||
Sbjct: 57378 ttatctcttggcaccacagt 57359
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>emb|BX546499.15| Zebrafish DNA sequence from clone DKEY-27P18 in linkage group 5,
             complete sequence
          Length = 194807

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 301   tgatgatgatgacgatgtcc 320
             ||||||||||||||||||||
Sbjct: 17100 tgatgatgatgacgatgtcc 17081
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>gb|AC117838.1| Caenorhabditis briggsae cosmid CB005E21, complete sequence
          Length = 109299

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 295   tcccattgatgatgatgacg 314
             ||||||||||||||||||||
Sbjct: 22370 tcccattgatgatgatgacg 22389
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>gb|AC091814.10| Homo sapiens 12p BAC RP11-290C10 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 149000

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 284   cagttgatccttcccattga 303
             ||||||||||||||||||||
Sbjct: 69650 cagttgatccttcccattga 69669
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>gb|AC160141.2| Gallus gallus BAC clone CH261-182D6 from chromosome unknown, complete
             sequence
          Length = 240564

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 155   ttatctcttggcaccacagt 174
             ||||||||||||||||||||
Sbjct: 58362 ttatctcttggcaccacagt 58343
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>emb|AL844155.6| Mouse DNA sequence from clone RP23-163L4 on chromosome 2, complete
             sequence
          Length = 193188

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 222   tgacatcaaaagccacagattggt 245
             |||||||||||||||||| |||||
Sbjct: 44575 tgacatcaaaagccacagcttggt 44598
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>dbj|AK087417.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched
           library, clone:E130014G12 product:Kaiso protein, full
           insert sequence
          Length = 2568

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 301 tgatgatgatgacgatgtcctttt 324
           ||||||||||||||||||| ||||
Sbjct: 670 tgatgatgatgacgatgtcatttt 693
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>dbj|AK089423.1| Mus musculus B6-derived CD11 +ve dendritic cells cDNA, RIKEN
           full-length enriched library, clone:F730026A18
           product:Kaiso protein, full insert sequence
          Length = 2104

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 301 tgatgatgatgacgatgtcctttt 324
           ||||||||||||||||||| ||||
Sbjct: 822 tgatgatgatgacgatgtcatttt 845
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 300      ttgatgatgatgacgatgtc 319
                ||||||||||||||||||||
Sbjct: 13143023 ttgatgatgatgacgatgtc 13143042



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 300     ttgatgatgatgacgatgtc 319
               ||||||||||||||||||||
Sbjct: 5794806 ttgatgatgatgacgatgtc 5794825
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>emb|AL731620.2|OSJN00270 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0003A12,
             complete sequence
          Length = 164425

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 300   ttgatgatgatgacgatgtc 319
             ||||||||||||||||||||
Sbjct: 89792 ttgatgatgatgacgatgtc 89811
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>emb|AL731622.1|OSJN00265 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0093P23,
             complete sequence
          Length = 165683

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 300   ttgatgatgatgacgatgtc 319
             ||||||||||||||||||||
Sbjct: 75233 ttgatgatgatgacgatgtc 75252
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>gb|BC027146.1| Mus musculus, clone IMAGE:4947407, mRNA
          Length = 1187

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 298 cattgatgatgatgacgatg 317
           ||||||||||||||||||||
Sbjct: 201 cattgatgatgatgacgatg 182
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>ref|XM_342669.2| PREDICTED: Rattus norvegicus similar to trypsinogen 8 (LOC362348),
           mRNA
          Length = 803

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 294 ttcccattgatgatgatgac 313
           ||||||||||||||||||||
Sbjct: 63  ttcccattgatgatgatgac 82
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>gb|AC084288.9| Mus musculus Strain C57BL6/J Chromosome 2 BAC, RP23-108H5, complete
             sequence
          Length = 200393

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 222   tgacatcaaaagccacagattggt 245
             |||||||||||||||||| |||||
Sbjct: 41637 tgacatcaaaagccacagcttggt 41614
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>gb|BC040102.1| Mus musculus, clone IMAGE:4947407, mRNA
          Length = 1187

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 298 cattgatgatgatgacgatg 317
           ||||||||||||||||||||
Sbjct: 201 cattgatgatgatgacgatg 182
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>emb|BX936423.12| Zebrafish DNA sequence from clone DKEY-174M14 in linkage group 20,
            complete sequence
          Length = 170767

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 175  ataggctagagtaattggtg 194
            ||||||||||||||||||||
Sbjct: 3006 ataggctagagtaattggtg 3025
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>gb|AF097416.1|AF097416 Mus musculus zinc finger transcription factor Kaiso mRNA, complete
           cds
          Length = 2583

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 301 tgatgatgatgacgatgtcctttt 324
           ||||||||||||||||||| ||||
Sbjct: 825 tgatgatgatgacgatgtcatttt 848
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>gb|AC159010.2| Gallus gallus BAC clone CH261-115H16 from chromosome unknown, complete
             sequence
          Length = 209348

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 155   ttatctcttggcaccacagt 174
             ||||||||||||||||||||
Sbjct: 23635 ttatctcttggcaccacagt 23654
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>emb|AL824707.7| Mouse DNA sequence from clone RP23-95O1 on chromosome 4, complete
             sequence
          Length = 225002

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 299   attgatgatgatgacgatgt 318
             ||||||||||||||||||||
Sbjct: 59625 attgatgatgatgacgatgt 59606
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>emb|AL512346.41| Mouse DNA sequence from clone RP23-322E15 on chromosome X, complete
              sequence
          Length = 227395

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 301    tgatgatgatgacgatgtcctttt 324
              ||||||||||||||||||| ||||
Sbjct: 208239 tgatgatgatgacgatgtcatttt 208262
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>emb|AL137062.13| Human DNA sequence from clone RP11-198M22 on chromosome 6, complete
             sequence
          Length = 137272

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 284   cagttgatccttcccattga 303
             ||||||||||||||||||||
Sbjct: 60074 cagttgatccttcccattga 60055


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,595,150
Number of Sequences: 3902068
Number of extensions: 3595150
Number of successful extensions: 82601
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 82280
Number of HSP's gapped (non-prelim): 313
length of query: 407
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 385
effective length of database: 17,147,199,772
effective search space: 6601671912220
effective search space used: 6601671912220
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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