ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal12k07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y5541_ARATH (Q9FKP8) ZF-HD homeobox protein At5g65410 30 5.7
2CST11_RAT (Q8K5A3) Cystatin-11 precursor 29 7.5
3GML_HUMAN (Q99445) Glycosyl-phosphatidylinositol-anchored molecu... 29 9.7

>Y5541_ARATH (Q9FKP8) ZF-HD homeobox protein At5g65410|
          Length = 279

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 362 FCGERLVAVIVALVWQHDHRGSVYRLPSLLHQAFECPPP 478
           FC E  V   V  VW H+++ ++ + PS LH     PPP
Sbjct: 228 FCQETGVPRQVLKVWLHNNKHTLGKSPSPLHHHQAPPPP 266



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>CST11_RAT (Q8K5A3) Cystatin-11 precursor|
          Length = 139

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +1

Query: 223 HLTTTVQKTVHYNTTPHTTNIMKGGFHSHRCHYVGLARLPILSAWKLLR 369
           H+T  +Q+T    T  +  N+ +G  H     Y  +  +P L  +K+L+
Sbjct: 84  HITVEMQRTTCLKTEKNLCNVQEGELHKQIQCYFSVYVIPWLEVFKMLK 132



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>GML_HUMAN (Q99445) Glycosyl-phosphatidylinositol-anchored molecule-like|
           protein precursor
          Length = 158

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = +3

Query: 228 YYNCTKNCXLQHNASHYKYHEGRIPFT*MSLRWSCTSSDSVC 353
           Y NCT NC   + A       G+I F   S  W C  +  VC
Sbjct: 70  YKNCTNNCTFVYAAEQPPEAPGKI-FKTNSFYWVCCCNSMVC 110


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,062,568
Number of Sequences: 219361
Number of extensions: 1525144
Number of successful extensions: 3677
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3677
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4315578075
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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