ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal6k13 |
|---|---|
| Clone Library Name | barley_pub |
>Y1829_MYCTU (Q50604) Hypothetical protein Rv1829/MT1877| Length = 164 Score = 50.1 bits (118), Expect = 6e-06 Identities = 25/105 (23%), Positives = 55/105 (52%) Frame = -1 Query: 674 LPIIVMETPSIMLLAALRNIRIPRPTIYNVVKEMTEMMGYTVRLVRITEMVHDAYYSRLY 495 LPI + ++ + + + + PRP +++++++ +G++++ VRI ++ +Y+ L Sbjct: 31 LPIWIGQSEAAAIALEQQGVEPPRPLTHDLIRDLIAALGHSLKEVRIVDLQEGTFYADLI 90 Query: 494 LAKTGNEEEVISFDLKPSDAINIAFRCKVPIQVNKRIAYNNGLKV 360 + I +PSD++ IA R VPI V + + GL + Sbjct: 91 FDRN------IKVSARPSDSVAIALRVGVPIYVEEAVLAQAGLLI 129
>GT2D1_HUMAN (Q9UHL9) General transcription factor II-I repeat domain-containing| protein 1 (GTF2I repeat domain-containing protein 1) (Muscle TFII-I repeat domain-containing protein 1) (General transcription factor III) (Slow-muscle-fiber enhancer binding Length = 959 Score = 32.0 bits (71), Expect = 1.8 Identities = 21/61 (34%), Positives = 32/61 (52%) Frame = -1 Query: 521 HDAYYSRLYLAKTGNEEEVISFDLKPSDAINIAFRCKVPIQVNKRIAYNNGLKVIQPKPT 342 +DA SR+ +A T E+ F+ K +A+ I + +VP KRI N G +I+ P Sbjct: 692 YDARLSRIDIANTLREQVQDLFNKKYGEALGIKYPVQVPY---KRIKSNPGSVIIEGLPP 748 Query: 341 G 339 G Sbjct: 749 G 749
>NALP4_HUMAN (Q96MN2) NACHT-, LRR- and PYD-containing protein 4| (PYRIN-containing APAF1-like protein 4) (PAAD and NACHT-containing protein 2) (PYRIN and NACHT-containing protein 2) (Ribonuclease inhibitor 2) Length = 994 Score = 32.0 bits (71), Expect = 1.8 Identities = 12/31 (38%), Positives = 19/31 (61%) Frame = +3 Query: 54 SYVHIHIVHLDVCRSFYFLGKGHYVHPHLAL 146 SYV +H+ + C + ++L K H HPH A+ Sbjct: 447 SYVFLHVCIQEFCAALFYLLKSHLDHPHPAV 477
>K2C4_HUMAN (P19013) Keratin, type II cytoskeletal 4 (Cytokeratin-4) (CK-4)| (Keratin-4) (K4) Length = 534 Score = 32.0 bits (71), Expect = 1.8 Identities = 26/108 (24%), Positives = 51/108 (47%), Gaps = 2/108 (1%) Frame = -1 Query: 599 TIYNVVKEMTEMMGYTVRLVRITEMVHDAYYS--RLYLAKTGNEEEVISFDLKPSDAINI 426 T +N++++ T T + E + + Y S R L GN++ + +LK Sbjct: 181 TKWNLLQQQT-----TTTSSKNLEPLFETYLSVLRKQLDTLGNDKGRLQSELKTMQDSVE 235 Query: 425 AFRCKVPIQVNKRIAYNNGLKVIQPKPTGSYVNSDQIQYARLDKPGDQ 282 F+ K ++NKR A N V++ +Y+N +++ A++D D+ Sbjct: 236 DFKTKYEEEINKRTAAENDFVVLKKDVDAAYLNKVELE-AKVDSLNDE 282
>ION3_CARAU (P18520) Intermediate filament protein ON3| Length = 520 Score = 31.2 bits (69), Expect = 3.0 Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 2/94 (2%) Frame = -1 Query: 530 EMVHDAYYSRL--YLAKTGNEEEVISFDLKPSDAINIAFRCKVPIQVNKRIAYNNGLKVI 357 + + +AY + L L GN++ + DL + F+ K ++NKR N +I Sbjct: 155 DAMFEAYINNLRRQLDSLGNDKMKLEADLHNMQGLVEDFKNKYEDEINKRTECENDFVLI 214 Query: 356 QPKPTGSYVNSDQIQYARLDKPGDQPCFEAQEFD 255 + +Y+N +++ A+L+ D+ F Q F+ Sbjct: 215 KKDVDEAYMNKVELE-AKLESLSDEINFLRQIFE 247
>Y1857_THEMA (Q9X2H2) UPF0144 protein TM1857| Length = 508 Score = 30.4 bits (67), Expect = 5.2 Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 1/100 (1%) Frame = -1 Query: 653 TPSIMLLAALRNIRIPRPTIYNVVKEMTEMMGYTVRLVRITEMVHD-AYYSRLYLAKTGN 477 TP +L+AA + RP +E E Y RL+++ E+ Y + Y + G Sbjct: 402 TPEAVLVAAADALSAARP---GARRESLE--NYIKRLMKLEEIAKSFKYVEKAYAIQAGR 456 Query: 476 EEEVISFDLKPSDAINIAFRCKVPIQVNKRIAYNNGLKVI 357 E VI K DA+ + ++ + + Y LKV+ Sbjct: 457 EIRVIVEPDKVDDALAEKLAYDISKKIEEELEYPGVLKVV 496
>K2C8_BRARE (Q6NWF6) Keratin, type II cytoskeletal 8 (Cytokeratin-8) (CK-8)| (Keratin-8) (K8) Length = 520 Score = 30.0 bits (66), Expect = 6.7 Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 2/94 (2%) Frame = -1 Query: 530 EMVHDAYYSRL--YLAKTGNEEEVISFDLKPSDAINIAFRCKVPIQVNKRIAYNNGLKVI 357 + + +AY + L L GN++ + DL + F+ K ++NKR N +I Sbjct: 161 DAMFEAYIANLRRQLDSLGNDKMKLEADLHNMQGLVEDFKNKYEDEINKRTECENEFVLI 220 Query: 356 QPKPTGSYVNSDQIQYARLDKPGDQPCFEAQEFD 255 + +Y+N +++ A+L+ D+ F Q F+ Sbjct: 221 KKDVDEAYMNKVELE-AKLESLTDEINFLRQIFE 253
>WDR67_HUMAN (Q96DN5) WD-repeat protein 67| Length = 1066 Score = 29.6 bits (65), Expect = 8.8 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 2/70 (2%) Frame = +3 Query: 111 GKGHYVHPHLALLYRVLFVCPEHEKAISVL--SSIFITFLNSSNKHAAHQIKLLGFKARL 284 G G Y + ++R L PE+ A S L + FLN K+ KLL R Sbjct: 421 GYGEYPTKYRMFIWRSLLQLPENHTAFSTLIDKGTHVAFLNLQKKYPIKSRKLLRVLQRT 480 Query: 285 VAGLVQSRVL 314 ++ L V+ Sbjct: 481 LSALAHWSVI 490
>UVRC_GEOSL (Q747I7) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 613 Score = 29.6 bits (65), Expect = 8.8 Identities = 12/18 (66%), Positives = 15/18 (83%) Frame = -1 Query: 242 MLVAAVEERYKDAAQYRD 189 M AA +ERY+DAA+YRD Sbjct: 211 MAAAAADERYEDAARYRD 228
>ATC1_DUNBI (P54209) Cation-transporting ATPase CA1 (EC 3.6.3.-)| Length = 1037 Score = 29.6 bits (65), Expect = 8.8 Identities = 26/104 (25%), Positives = 39/104 (37%) Frame = -1 Query: 650 PSIMLLAALRNIRIPRPTIYNVVKEMTEMMGYTVRLVRITEMVHDAYYSRLYLAKTGNEE 471 P ++LL + N + T N K + ++ Y DA R G + Sbjct: 113 PMVILLILVANATVGVVTERNAEKAIEQLKSYEA---------DDATVLR-----NGQLQ 158 Query: 470 EVISFDLKPSDAINIAFRCKVPIQVNKRIAYNNGLKVIQPKPTG 339 + S D+ P D + +A KVP Y LK+ Q TG Sbjct: 159 LIPSADIVPGDIVELAVGNKVPADTRVSHIYTTSLKIDQSLLTG 202 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 99,354,511 Number of Sequences: 219361 Number of extensions: 2095893 Number of successful extensions: 5778 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 5584 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5777 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6655306086 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
