ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal12j05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.037
2gb|AF210816.1|AF210816 Oryza sativa subsp. japonica phragmoplast... 48 0.037
3gb|AC165339.2| Mus musculus BAC clone RP24-116I9 from chromosome... 42 2.3
4gb|AC131768.4| Mus musculus BAC clone RP24-289C2 from chromosome... 42 2.3
5gb|AC133603.3| Mus musculus BAC clone RP24-282H21 from chromosom... 42 2.3
6gb|U13644.1| Caenorhabditis elegans cosmid F56D2, complete sequence 42 2.3
7emb|AL021393.1|HS747E2 Human DNA sequence from clone CTA-747E2 o... 42 2.3
8gb|AC105183.8| Homo sapiens chromosome 18, clone RP11-348C8, com... 42 2.3
9gb|AC105094.6| Homo sapiens chromosome 18, clone RP11-1096D5, co... 42 2.3
10gb|AC110997.4| Homo sapiens chromosome 18, clone RP11-56J20, com... 42 2.3
11ref|NM_171131.3| Caenorhabditis elegans F56D2.6b (F56D2.6) mRNA,... 42 2.3
12ref|NM_171130.3| Caenorhabditis elegans F56D2.6a (F56D2.6) mRNA,... 42 2.3
13gb|AC079602.15| Homo sapiens 12 BAC RP11-216P16 (Roswell Park Ca... 42 2.3
14emb|Z98941.2|HS204E5 Human DNA sequence from clone XX-204E5 on c... 42 2.3
15gb|AE001433.1| Plasmodium falciparum 3D7 chromosome 2 section 70... 40 9.1
16gb|AC124107.8| Mus musculus chromosome 5, clone RP24-317M4, comp... 40 9.1
17gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 9.1
18gb|AC165253.2| Mus musculus BAC clone RP23-413P10 from chromosom... 40 9.1
19ref|XM_535757.2| PREDICTED: Canis familiaris similar to Golgi au... 40 9.1
20ref|XM_751824.1| Ustilago maydis 521 hypothetical protein (UM007... 40 9.1
21gb|AC158912.3| Mus musculus chromosome 5, clone RP23-131C17, com... 40 9.1
22emb|AL023281.1|HS544A11 Human DNA sequence from clone CTA-544A11... 40 9.1
23gb|AC154784.2| Mus musculus BAC clone RP23-90B4 from chromosome ... 40 9.1
24gb|AC027419.11| Homo sapiens chromosome 8, clone RP11-654G14, co... 40 9.1
25gb|AC108469.5| Homo sapiens BAC clone RP11-497H2 from 4, complet... 40 9.1
26gb|AC006054.2| Homo sapiens Xq28 BAC GS1-382P7 (Roswell Park Can... 40 9.1
27gb|AE009951.2| Fusobacterium nucleatum subsp. nucleatum ATCC 255... 40 9.1
28dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.1
29dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.1
30gb|AC134231.2| Oryza sativa (japonica cultivar-group) chromosome... 40 9.1
31dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 9.1
32dbj|AP002541.2| Oryza sativa (japonica cultivar-group) genomic D... 40 9.1
33dbj|AP002868.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.1
34emb|X17285.1|RLPNOD Rhizobium leguminosarum biovar viciae nodO a... 40 9.1
35gb|AC007056.4|AC007056 Homo sapiens clone from human chromosome ... 40 9.1
36gb|AC118007.11| Mus musculus chromosome 9, clone RP23-377N5, com... 40 9.1
37emb|CT574568.2| Pan troglodytes chromosome X clone PTB-081L12 ma... 40 9.1
38gb|AC125525.3| Mus musculus BAC clone RP24-395H10 from 1, comple... 40 9.1
39emb|Z75890.1|HSB42B1 Human DNA sequence from clone SC22CB-42B1 o... 40 9.1
40dbj|AP003787.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 9.1 
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                        
Query: 516      gcttcctcagcctccttcagtcgtactagcaattcaccag 555
                |||||||||||||| |||| |||||| || ||||||||||
Sbjct: 16720038 gcttcctcagcctctttcaatcgtacaagtaattcaccag 16719999



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                                 
Query: 612      tcaaggtcagcatatcgtaccaagattctagaatatgcttgcattgctg 660
                ||||| ||||||||  || |||||||||||| || | ||||||||||||
Sbjct: 16719795 tcaagttcagcatactgttccaagattctagcatgtccttgcattgctg 16719747
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>gb|AF210816.1|AF210816 Oryza sativa subsp. japonica phragmoplast-associated kinesin-related
            protein 1 mRNA, partial cds
          Length = 2736

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                    
Query: 516  gcttcctcagcctccttcagtcgtactagcaattcaccag 555
            |||||||||||||| |||| |||||| || ||||||||||
Sbjct: 2135 gcttcctcagcctctttcaatcgtacaagtaattcaccag 2096



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                             
Query: 612  tcaaggtcagcatatcgtaccaagattctagaatatgcttgcattgctg 660
            ||||| ||||||||  || |||||||||||| || | ||||||||||||
Sbjct: 1892 tcaagttcagcatactgttccaagattctagcatgtccttgcattgctg 1844
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>gb|AC165339.2| Mus musculus BAC clone RP24-116I9 from chromosome y, complete sequence
          Length = 170958

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 517    cttcctcagcctccttcagtc 537
              |||||||||||||||||||||
Sbjct: 112600 cttcctcagcctccttcagtc 112580
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>gb|AC131768.4| Mus musculus BAC clone RP24-289C2 from chromosome Y, complete sequence
          Length = 163284

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 517    cttcctcagcctccttcagtc 537
              |||||||||||||||||||||
Sbjct: 155299 cttcctcagcctccttcagtc 155319
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>gb|AC133603.3| Mus musculus BAC clone RP24-282H21 from chromosome Y, complete sequence
          Length = 167448

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 517   cttcctcagcctccttcagtc 537
             |||||||||||||||||||||
Sbjct: 22347 cttcctcagcctccttcagtc 22327
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>gb|U13644.1| Caenorhabditis elegans cosmid F56D2, complete sequence
          Length = 19383

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 497   ttcctcagcaactcttgtcgc 517
             |||||||||||||||||||||
Sbjct: 12600 ttcctcagcaactcttgtcgc 12620
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>emb|AL021393.1|HS747E2 Human DNA sequence from clone CTA-747E2 on chromosome 22q12.1, complete
             sequence
          Length = 109859

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 265   tcattccttcctctttaaactggta 289
             |||||| ||||||||||||||||||
Sbjct: 72600 tcattcattcctctttaaactggta 72576
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>gb|AC105183.8| Homo sapiens chromosome 18, clone RP11-348C8, complete sequence
          Length = 141512

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 259  cactgctcattccttcctctt 279
            |||||||||||||||||||||
Sbjct: 4608 cactgctcattccttcctctt 4628
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>gb|AC105094.6| Homo sapiens chromosome 18, clone RP11-1096D5, complete sequence
          Length = 210317

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 259   cactgctcattccttcctctt 279
             |||||||||||||||||||||
Sbjct: 69756 cactgctcattccttcctctt 69736
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>gb|AC110997.4| Homo sapiens chromosome 18, clone RP11-56J20, complete sequence
          Length = 160456

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 259   cactgctcattccttcctctt 279
             |||||||||||||||||||||
Sbjct: 83252 cactgctcattccttcctctt 83232
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>ref|NM_171131.3| Caenorhabditis elegans F56D2.6b (F56D2.6) mRNA, complete cds
          Length = 2420

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 497 ttcctcagcaactcttgtcgc 517
           |||||||||||||||||||||
Sbjct: 469 ttcctcagcaactcttgtcgc 449
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>ref|NM_171130.3| Caenorhabditis elegans F56D2.6a (F56D2.6) mRNA, complete cds
          Length = 2475

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 497 ttcctcagcaactcttgtcgc 517
           |||||||||||||||||||||
Sbjct: 468 ttcctcagcaactcttgtcgc 448
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>gb|AC079602.15| Homo sapiens 12 BAC RP11-216P16 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 172008

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 174   ttgctattttccctcaagatccttt 198
             ||||||||||||||||| |||||||
Sbjct: 87913 ttgctattttccctcaatatccttt 87937
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>emb|Z98941.2|HS204E5 Human DNA sequence from clone XX-204E5 on chromosome 12, complete
             sequence
          Length = 129192

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 174   ttgctattttccctcaagatccttt 198
             ||||||||||||||||| |||||||
Sbjct: 10890 ttgctattttccctcaatatccttt 10866
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>gb|AE001433.1| Plasmodium falciparum 3D7 chromosome 2 section 70 of 73 of the
           complete sequence
          Length = 14012

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 596 aagaatatattttccttcaa 615
           ||||||||||||||||||||
Sbjct: 926 aagaatatattttccttcaa 907
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>gb|AC124107.8| Mus musculus chromosome 5, clone RP24-317M4, complete sequence
          Length = 194641

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 130   caaaaggtagaagagaactg 149
             ||||||||||||||||||||
Sbjct: 88469 caaaaggtagaagagaactg 88488
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 314      tcttcagatgttgcatctgt 333
                ||||||||||||||||||||
Sbjct: 13073533 tcttcagatgttgcatctgt 13073552
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>gb|AC165253.2| Mus musculus BAC clone RP23-413P10 from chromosome 9, complete sequence
          Length = 200549

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 120    aggacaagggcaaaaggtag 139
              ||||||||||||||||||||
Sbjct: 111734 aggacaagggcaaaaggtag 111715
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>ref|XM_535757.2| PREDICTED: Canis familiaris similar to Golgi autoantigen, golgin
            subfamily B member 1 (Giantin) (Macrogolgin) (Golgi
            complex-associated protein, 372-kDa) (GCP372)
            (LOC478581), mRNA
          Length = 7040

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 516  gcttcctcagcctccttcag 535
            ||||||||||||||||||||
Sbjct: 4628 gcttcctcagcctccttcag 4609
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>ref|XM_751824.1| Ustilago maydis 521 hypothetical protein (UM00770.1) partial mRNA
          Length = 2064

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 296 acatggtgccggcatcgatcttca 319
           ||||||||||||||||||| ||||
Sbjct: 151 acatggtgccggcatcgatgttca 128
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>gb|AC158912.3| Mus musculus chromosome 5, clone RP23-131C17, complete sequence
          Length = 182161

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 130    caaaaggtagaagagaactg 149
              ||||||||||||||||||||
Sbjct: 139507 caaaaggtagaagagaactg 139526
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>emb|AL023281.1|HS544A11 Human DNA sequence from clone CTA-544A11 on chromosome 22q12.1-12.3,
             complete sequence
          Length = 113143

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 118   caaggacaagggcaaaaggt 137
             ||||||||||||||||||||
Sbjct: 39108 caaggacaagggcaaaaggt 39127
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>gb|AC154784.2| Mus musculus BAC clone RP23-90B4 from chromosome 9, complete sequence
          Length = 176753

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 5     acaaaaatttacagtaagtg 24
             ||||||||||||||||||||
Sbjct: 84414 acaaaaatttacagtaagtg 84395
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>gb|AC027419.11| Homo sapiens chromosome 8, clone RP11-654G14, complete sequence
          Length = 172880

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 93    caaagccaacagtaaactgc 112
             ||||||||||||||||||||
Sbjct: 55706 caaagccaacagtaaactgc 55687
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>gb|AC108469.5| Homo sapiens BAC clone RP11-497H2 from 4, complete sequence
          Length = 62038

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 164   cgtactgcagttgctatttt 183
             ||||||||||||||||||||
Sbjct: 22836 cgtactgcagttgctatttt 22817
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>gb|AC006054.2| Homo sapiens Xq28 BAC GS1-382P7 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 143738

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 1     ctctacaaaaatttacagtaagtg 24
             ||||||||||||||||||| ||||
Sbjct: 46335 ctctacaaaaatttacagtcagtg 46358
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>gb|AE009951.2| Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete genome
          Length = 2174500

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 591     ccatcaagaatatattttccttca 614
               ||||||||||||||| ||||||||
Sbjct: 1487879 ccatcaagaatatatcttccttca 1487856
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 314      tcttcagatgttgcatctgt 333
                ||||||||||||||||||||
Sbjct: 13070308 tcttcagatgttgcatctgt 13070327
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 243     tatttcaagctgtagccact 262
               ||||||||||||||||||||
Sbjct: 1056143 tatttcaagctgtagccact 1056162
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>gb|AC134231.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0006D11,
              complete sequence
          Length = 176637

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 314    tcttcagatgttgcatctgt 333
              ||||||||||||||||||||
Sbjct: 151231 tcttcagatgttgcatctgt 151250
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 298     atggtgccggcatcgatctt 317
               ||||||||||||||||||||
Sbjct: 7717846 atggtgccggcatcgatctt 7717865
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>dbj|AP002541.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0494A10
          Length = 145576

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 243   tatttcaagctgtagccact 262
             ||||||||||||||||||||
Sbjct: 93811 tatttcaagctgtagccact 93830
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>dbj|AP002868.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0698A04
          Length = 141079

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 243   tatttcaagctgtagccact 262
             ||||||||||||||||||||
Sbjct: 25457 tatttcaagctgtagccact 25476
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>emb|X17285.1|RLPNOD Rhizobium leguminosarum biovar viciae nodO and nodT genes
          Length = 4327

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 310  tcgatcttcagatgttgcat 329
            ||||||||||||||||||||
Sbjct: 2084 tcgatcttcagatgttgcat 2103
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>gb|AC007056.4|AC007056 Homo sapiens clone from human chromosome 14q31 region containing gene
             for neurexin III, partial CDS, complete sequence
          Length = 182481

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 443   catgtccatcttctgctctg 462
             ||||||||||||||||||||
Sbjct: 99221 catgtccatcttctgctctg 99202
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>gb|AC118007.11| Mus musculus chromosome 9, clone RP23-377N5, complete sequence
          Length = 203921

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 120    aggacaagggcaaaaggtag 139
              ||||||||||||||||||||
Sbjct: 168666 aggacaagggcaaaaggtag 168647
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>emb|CT574568.2| Pan troglodytes chromosome X clone PTB-081L12 map Xq28, complete
             sequence
          Length = 199100

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 1     ctctacaaaaatttacagtaagtg 24
             ||||||||||||||||||| ||||
Sbjct: 52798 ctctacaaaaatttacagtcagtg 52775
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>gb|AC125525.3| Mus musculus BAC clone RP24-395H10 from 1, complete sequence
          Length = 195904

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 518   ttcctcagcctccttcagtc 537
             ||||||||||||||||||||
Sbjct: 89802 ttcctcagcctccttcagtc 89821
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>emb|Z75890.1|HSB42B1 Human DNA sequence from clone SC22CB-42B1 on chromosome 22, complete
             sequence
          Length = 40943

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 118   caaggacaagggcaaaaggt 137
             ||||||||||||||||||||
Sbjct: 18043 caaggacaagggcaaaaggt 18062
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>dbj|AP003787.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1904C11, complete
             sequence
          Length = 104429

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 93    caaagccaacagtaaactgc 112
             ||||||||||||||||||||
Sbjct: 53662 caaagccaacagtaaactgc 53643


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,604,466
Number of Sequences: 3902068
Number of extensions: 7604466
Number of successful extensions: 134785
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 134530
Number of HSP's gapped (non-prelim): 255
length of query: 667
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 644
effective length of database: 17,143,297,704
effective search space: 11040283721376
effective search space used: 11040283721376
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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