ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal12j03 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X82937.1|HVRNAJIP H.vulgare mRNA for jasmonate induced protein Length = 1334 Score = 1441 bits (727), Expect = 0.0 Identities = 737/739 (99%), Gaps = 1/739 (0%) Strand = Plus / Minus Query: 1 atagtttcccgacaggggcggggggtattattttaggagtgcacactaggcacttacata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1280 atagtttcccgacaggggcggggggtattattttaggagtgcacactaggcacttacata 1221 Query: 61 ctcacgacagtagtagctagcactaagagcagaagatagcatagcaaagatcatagtagt 120 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 1220 ctcacgacagtagtagctamcactaagagcagaagatagcatagcaaagatcatagtagt 1161 Query: 121 agcatgatcagtttaaagttcagggtaattgtgcttaactagacgagcgagttcgagacc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1160 agcatgatcagtttaaagttcagggtaattgtgcttaactagacgagcgagttcgagacc 1101 Query: 181 atgaggcataggcgccacacggcaaactgtaagcccgtctgttatcttcaccttgctagt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1100 atgaggcataggcgccacacggcaaactgtaagcccgtctgttatcttcaccttgctagt 1041 Query: 241 tccactgctgaaaatcaagtcaagcagcgcacctgcagctatcccaatgagcgcaccaat 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1040 tccactgctgaaaatcaagtcaagcagcgcacctgcagctatcccaatgagcgcaccaat 981 Query: 301 tccaaaaccgacgactcctccaattaccgtgacagccgcagaagcaatttcgatgtctag 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 980 tccaaaaccgacgactcctccaattaccgtgacagccgcagaagcaatttcgatgtctag 921 Query: 361 tgctacgaatccagcttctacagcagtagtaactatttctcccacctcaaggttaactac 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 920 tgctacgaatccagcttctacagcagtagtaactatttctcccacctcaaggttaactac 861 Query: 421 tgcagttaacgcatttactgaatccctaaccgctgcctccagcttatcttctgctgtgta 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 860 tgcagttaacgcatttactgaatccctaaccgctgcctccagcttatcttctgctgtgta 801 Query: 481 tatgtcccacaccattgcagctgctgtaaaaactaaaactgccaccccgacttttcccaa 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 800 tatgtcccacaccattgcagctgctgtaaaaactaaaactgccaccccgacttttcccaa 741 Query: 541 agcttcaaatgagtaagtcaccacagattttccttgtcccgcttccgcaataatattgtc 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 740 agcttcaaatgagtaagtcaccacagattttccttgtcccgcttccgcaataatattgtc 681 Query: 601 atatacctgtagcttttggatatcatccaagtttttgaaagcccccctaaaaccaagctt 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 680 atatacctgtagcttttggatatcatccaagtttttgaaagcccccctaaaaccaagctt 621 Query: 661 tgacatattttcttgcacaagatcctcaaacatgattttgttttccttgagccattttga 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 620 tgacatattttcttgcacaagatcctcaaacatgattttgttttccttgagccattttga 561 Query: 721 gaattgattttggtgcaaa 739 ||||||| ||||||||||| Sbjct: 560 gaattga-tttggtgcaaa 543
>gb|AC107952.5| Homo sapiens chromosome 8, clone RP11-140I16, complete sequence Length = 142102 Score = 44.1 bits (22), Expect = 0.65 Identities = 25/26 (96%) Strand = Plus / Minus Query: 684 cctcaaacatgattttgttttccttg 709 |||||||||||| ||||||||||||| Sbjct: 67551 cctcaaacatgaatttgttttccttg 67526
>gb|AC113380.2| Homo sapiens chromosome 5 clone RP11-304B20, complete sequence Length = 143534 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 707 ttgagccattttgagaattgatttt 731 |||||||||||||| |||||||||| Sbjct: 63681 ttgagccattttgataattgatttt 63705
>ref|XM_215932.3| PREDICTED: Rattus norvegicus matrilin 4 (predicted) (Matn4_predicted), mRNA Length = 2236 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 168 cgagttcgagaccatgaggca 188 ||||||||||||||||||||| Sbjct: 253 cgagttcgagaccatgaggca 273
>emb|BX255881.9| Zebrafish DNA sequence from clone CH211-268E23 in linkage group 20, complete sequence Length = 163427 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 593 atattgtcatatacctgtagc 613 ||||||||||||||||||||| Sbjct: 96605 atattgtcatatacctgtagc 96585 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,316,189 Number of Sequences: 3902068 Number of extensions: 7316189 Number of successful extensions: 133676 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 133665 Number of HSP's gapped (non-prelim): 11 length of query: 739 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 716 effective length of database: 17,143,297,704 effective search space: 12274601156064 effective search space used: 12274601156064 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)
