ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal12i20
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_189451.1| Oryza sativa (japonica cultivar-group), predic... 109 6e-21
2dbj|AK098940.1| Oryza sativa (japonica cultivar-group) cDNA clon... 109 6e-21
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 82 1e-12
4dbj|AP003277.2| Oryza sativa (japonica cultivar-group) genomic D... 82 1e-12
5dbj|AK058329.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 1e-12
6gb|AY108447.1| Zea mays PCO077050 mRNA sequence 74 3e-10
7gb|BT016048.1| Drosophila melanogaster LP19671 full insert cDNA 42 1.1
8ref|NM_143000.1| Drosophila melanogaster CG17782-RA (CG17782), mRNA 42 1.1
9gb|AF254822.1|AF254822 Homo sapiens SMARCA4 isoform (SMARCA4) ge... 42 1.1
10gb|AC008204.9|AC008204 Drosophila melanogaster, chromosome 3R, r... 42 1.1
11gb|AC157891.3| Medicago truncatula chromosome 7 BAC clone mte1-1... 42 1.1
12gb|AE003747.3| Drosophila melanogaster chromosome 3R, section 85... 42 1.1
13gb|AC006127.1|AC006127 Homo sapiens chromosome 19, cosmid F24827... 42 1.1
14gb|AC145568.4| Mus musculus BAC clone RP24-473H20 from 6, comple... 42 1.1
15gb|AC124351.3| Mus musculus BAC clone RP24-467D20 from chromosom... 40 4.4
16dbj|AB044334.2| Mus musculus CAST gene for calpastatin type I, I... 40 4.4
17gb|AC154780.2| Mus musculus BAC clone RP24-462E4 from 13, comple... 40 4.4 
>ref|NM_189451.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 984

 Score =  109 bits (55), Expect = 6e-21
 Identities = 95/109 (87%)
 Strand = Plus / Minus

                                                                       
Query: 226 tgtactcctggctccgcgaccactcgtccatctcccggnctcgcatcacggncaaagggt 285
           |||||||  ||||||  ||||||||||| ||||| ||| |||||||||| | || ||| |
Sbjct: 928 tgtactctcggctcctggaccactcgtcgatctcgcgggctcgcatcaccggcagaggat 869

                                                            
Query: 286 gcgacagctccctcgtctgagcgttccggatgtaccacccgaccgggtt 334
           |||||||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct: 868 gcgacagctctctcgtctgagcgttccggatgtaccagccgacggggtt 820
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>dbj|AK098940.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013043D06, full
           insert sequence
          Length = 1250

 Score =  109 bits (55), Expect = 6e-21
 Identities = 95/109 (87%)
 Strand = Plus / Minus

                                                                       
Query: 226 tgtactcctggctccgcgaccactcgtccatctcccggnctcgcatcacggncaaagggt 285
           |||||||  ||||||  ||||||||||| ||||| ||| |||||||||| | || ||| |
Sbjct: 982 tgtactctcggctcctggaccactcgtcgatctcgcgggctcgcatcaccggcagaggat 923

                                                            
Query: 286 gcgacagctccctcgtctgagcgttccggatgtaccacccgaccgggtt 334
           |||||||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct: 922 gcgacagctctctcgtctgagcgttccggatgtaccagccgacggggtt 874
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 75/87 (86%)
 Strand = Plus / Plus

                                                                            
Query: 226      tgtactcctggctccgcgaccactcgtccatctcccggnctcgcatcacggncaaagggt 285
                |||||||  ||||||  ||||||||||| ||||| ||| |||||||||| | || ||| |
Sbjct: 42818794 tgtactctcggctcctggaccactcgtcgatctcgcgggctcgcatcaccggcagaggat 42818853

                                           
Query: 286      gcgacagctccctcgtctgagcgttcc 312
                |||||||||| ||||||||||||||||
Sbjct: 42818854 gcgacagctctctcgtctgagcgttcc 42818880
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>dbj|AP003277.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0518C01
          Length = 173555

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 75/87 (86%)
 Strand = Plus / Plus

                                                                         
Query: 226   tgtactcctggctccgcgaccactcgtccatctcccggnctcgcatcacggncaaagggt 285
             |||||||  ||||||  ||||||||||| ||||| ||| |||||||||| | || ||| |
Sbjct: 12528 tgtactctcggctcctggaccactcgtcgatctcgcgggctcgcatcaccggcagaggat 12587

                                        
Query: 286   gcgacagctccctcgtctgagcgttcc 312
             |||||||||| ||||||||||||||||
Sbjct: 12588 gcgacagctctctcgtctgagcgttcc 12614
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>dbj|AK058329.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-014-C02, full
           insert sequence
          Length = 1127

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 75/87 (86%)
 Strand = Plus / Minus

                                                                       
Query: 226 tgtactcctggctccgcgaccactcgtccatctcccggnctcgcatcacggncaaagggt 285
           |||||||  ||||||  ||||||||||| ||||| ||| |||||||||| | || ||| |
Sbjct: 953 tgtactctcggctcctggaccactcgtcgatctcgcgggctcgcatcaccggcagaggat 894

                                      
Query: 286 gcgacagctccctcgtctgagcgttcc 312
           |||||||||| ||||||||||||||||
Sbjct: 893 gcgacagctctctcgtctgagcgttcc 867
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>gb|AY108447.1| Zea mays PCO077050 mRNA sequence
          Length = 636

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 110/135 (81%)
 Strand = Plus / Minus

                                                                       
Query: 200 ctgaaacatcttgtgcaacagggtcctgtactcctggctccgcgaccactcgtccatctc 259
           ||||||||| || ||||  | |||| ||||||||||||| |  |||||||| || |||||
Sbjct: 281 ctgaaacattttttgcattacggtcttgtactcctggcttcttgaccactcatcgatctc 222

                                                                       
Query: 260 ccggnctcgcatcacggncaaagggtgcgacagctccctcgtctgagcgttccggatgta 319
            | | |||||||||| | ||||||||| || ||||| || || || || |||||||||||
Sbjct: 221 tctggctcgcatcacaggcaaagggtgtgaaagctctctggtttgtgcattccggatgta 162

                          
Query: 320 ccacccgaccgggtt 334
           |||||| || |||||
Sbjct: 161 ccacccaactgggtt 147
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>gb|BT016048.1| Drosophila melanogaster LP19671 full insert cDNA
          Length = 1504

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 107 accaccaccagcgcacccacc 127
           |||||||||||||||||||||
Sbjct: 970 accaccaccagcgcacccacc 990
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>ref|NM_143000.1| Drosophila melanogaster CG17782-RA (CG17782), mRNA
          Length = 1440

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 107 accaccaccagcgcacccacc 127
           |||||||||||||||||||||
Sbjct: 943 accaccaccagcgcacccacc 963
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>gb|AF254822.1|AF254822 Homo sapiens SMARCA4 isoform (SMARCA4) gene, complete cds,
             alternatively spliced
          Length = 102910

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 210   ttgtgcaacagggtcctgtactcctggct 238
             ||||| ||||||||||||||| |||||||
Sbjct: 67081 ttgtggaacagggtcctgtacacctggct 67109
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>gb|AC008204.9|AC008204 Drosophila melanogaster, chromosome 3R, region 95E-95F, BAC clone
              BACR04E17, complete sequence
          Length = 199016

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 107    accaccaccagcgcacccacc 127
              |||||||||||||||||||||
Sbjct: 120897 accaccaccagcgcacccacc 120877
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>gb|AC157891.3| Medicago truncatula chromosome 7 BAC clone mte1-1i2, complete sequence
          Length = 154095

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 20    taattccagtcacatgtaccg 40
             |||||||||||||||||||||
Sbjct: 30380 taattccagtcacatgtaccg 30360
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>gb|AE003747.3| Drosophila melanogaster chromosome 3R, section 85 of 118 of the complete
              sequence
          Length = 206741

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 107    accaccaccagcgcacccacc 127
              |||||||||||||||||||||
Sbjct: 121153 accaccaccagcgcacccacc 121133
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>gb|AC006127.1|AC006127 Homo sapiens chromosome 19, cosmid F24827, complete sequence
          Length = 36814

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 210   ttgtgcaacagggtcctgtactcctggct 238
             ||||| ||||||||||||||| |||||||
Sbjct: 11431 ttgtggaacagggtcctgtacacctggct 11459
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>gb|AC145568.4| Mus musculus BAC clone RP24-473H20 from 6, complete sequence
          Length = 201210

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 172   tacacaggcaggcaggacaga 192
             |||||||||||||||||||||
Sbjct: 99768 tacacaggcaggcaggacaga 99748
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>gb|AC124351.3| Mus musculus BAC clone RP24-467D20 from chromosome 8, complete sequence
          Length = 122811

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 75    tatacccaactctactgatt 94
             ||||||||||||||||||||
Sbjct: 64895 tatacccaactctactgatt 64876
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>dbj|AB044334.2| Mus musculus CAST gene for calpastatin type I, II, III, IV-L, IV-S,
             complete cds
          Length = 34223

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 144   tctactgtaattcagttcat 163
             ||||||||||||||||||||
Sbjct: 27141 tctactgtaattcagttcat 27122
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>gb|AC154780.2| Mus musculus BAC clone RP24-462E4 from 13, complete sequence
          Length = 161998

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 144   tctactgtaattcagttcat 163
             ||||||||||||||||||||
Sbjct: 50148 tctactgtaattcagttcat 50167


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,894,236
Number of Sequences: 3902068
Number of extensions: 1894236
Number of successful extensions: 36416
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36392
Number of HSP's gapped (non-prelim): 24
length of query: 334
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 312
effective length of database: 17,147,199,772
effective search space: 5349926328864
effective search space used: 5349926328864
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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