>UN84B_HUMAN (Q9UH99) Sad1/unc-84-like protein 2 (Rab5-interacting protein)|
           (Rab5IP)
          Length = 717

 Score = 78.2 bits (191), Expect = 2e-14
 Identities = 49/110 (44%), Positives = 64/110 (58%), Gaps = 2/110 (1%)
 Frame = -2

Query: 571 IRLRTGIVPEAVTLEHVDKSVAFDR--SSAPKDFQVSGWYQGADDDSDKQPRMPTSLGEF 398
           +RL   I P AVTLEHV K+++ +   SSAPKDF + G+    D+D  ++    T LG+F
Sbjct: 613 VRLSARIRPTAVTLEHVPKALSPNSTISSAPKDFAIFGF----DEDLQQEG---TLLGKF 665

Query: 397 TYDLEKSNAQTFQLDRTTADASVVNMVRLDFSSNHGQPELTCIYRFRVHG 248
           TYD +    QTF     T   +   +V L   +N G PE TCIYRFRVHG
Sbjct: 666 TYDQDGEPIQTFHFQAPTM--ATYQVVELRILTNWGHPEYTCIYRFRVHG 713

>UN84B_MOUSE (Q8BJS4) Sad1/unc-84-like protein 2|
          Length = 699

 Score = 73.9 bits (180), Expect = 3e-13
 Identities = 47/110 (42%), Positives = 62/110 (56%), Gaps = 2/110 (1%)
 Frame = -2

Query: 571 IRLRTGIVPEAVTLEHVDKSVAFDR--SSAPKDFQVSGWYQGADDDSDKQPRMPTSLGEF 398
           +RL   I P AVTLEHV K+++ +   SSAPKDF + G+    D+D  ++    T LG F
Sbjct: 595 VRLSARIRPTAVTLEHVPKALSPNSTISSAPKDFAIFGF----DEDLQQEG---TLLGTF 647

Query: 397 TYDLEKSNAQTFQLDRTTADASVVNMVRLDFSSNHGQPELTCIYRFRVHG 248
            YD +    QTF      +  +   +V L   +N G PE TCIYRFRVHG
Sbjct: 648 AYDQDGEPIQTFYFQ--ASKMATYQVVELRILTNWGHPEYTCIYRFRVHG 695

>UN84A_HUMAN (O94901) Sad1/unc-84 protein-like 1 (Unc-84 homolog A)|
          Length = 812

 Score = 72.0 bits (175), Expect = 1e-12
 Identities = 45/110 (40%), Positives = 65/110 (59%), Gaps = 2/110 (1%)
 Frame = -2

Query: 571  IRLRTGIVPEAVTLEHVDKSVA--FDRSSAPKDFQVSGWYQGADDDSDKQPRMPTSLGEF 398
            +RL   I P A TLEH+ K+++   + SSAPKDF V     G +++  ++ ++   LG+F
Sbjct: 707  VRLSMMIHPAAFTLEHIPKTLSPTGNISSAPKDFAV----YGLENEYQEEGQL---LGQF 759

Query: 397  TYDLEKSNAQTFQLDRTTADASVVNMVRLDFSSNHGQPELTCIYRFRVHG 248
            TYD +  + Q FQ  +   D +   +V L   SN G PE TC+YRFRVHG
Sbjct: 760  TYDQDGESLQMFQALKRPDDTAF-QIVELRIFSNWGHPEYTCLYRFRVHG 808

>SAD1_SCHPO (Q09825) Spindle pole body-associated protein sad1|
          Length = 514

 Score = 69.3 bits (168), Expect = 7e-12
 Identities = 40/103 (38%), Positives = 55/103 (53%), Gaps = 1/103 (0%)
 Frame = -2

Query: 538 VTLEHVDKSVAFDRSSAPKDFQVSGWYQGADDDSDKQPRMPTSLGEFTYDLEKSNAQTFQ 359
           VT+EHV   +A D SSAPKDF++  W QG         +M   LG+  Y L + + QTF 
Sbjct: 396 VTIEHVQHKIAHDLSSAPKDFEL--WVQGMSS------KMFVLLGKARYSLTEDSIQTFS 447

Query: 358 LDRTT-ADASVVNMVRLDFSSNHGQPELTCIYRFRVHGSEPGS 233
            + +    A  +  V L   SN G P  TC+Y+ RVHG+ P +
Sbjct: 448 FESSNYIVAEPIQNVILKIKSNWGNPNYTCLYQVRVHGTVPNA 490

>UN84A_MOUSE (Q9D666) Sad1/unc-84 protein-like 1 (Unc-84 homolog A)|
          Length = 913

 Score = 67.0 bits (162), Expect = 4e-11
 Identities = 46/111 (41%), Positives = 59/111 (53%), Gaps = 3/111 (2%)
 Frame = -2

Query: 571  IRLRTGIVPEAVTLEHVDKSVA--FDRSSAPKDFQVSGWYQGADDDSDKQPRMPTSLGEF 398
            +RL   I P   T+EH+ K+++   + SSAPKDF V G      ++   QP     LG F
Sbjct: 809  VRLSMKIYPTTFTMEHIPKTLSPTGNISSAPKDFAVYGLETEYQEEG--QP-----LGRF 861

Query: 397  TYDLEKSNAQTFQ-LDRTTADASVVNMVRLDFSSNHGQPELTCIYRFRVHG 248
            TYD E  + Q F  L+R         +V L   SN G PE TC+YRFRVHG
Sbjct: 862  TYDQEGDSLQMFHTLERPD---QAFQIVELRVLSNWGHPEYTCLYRFRVHG 909

>SPAG4_MOUSE (Q9JJF2) Sperm-associated antigen 4 protein (Outer dense|
           fiber-associated protein SPAG4)
          Length = 443

 Score = 63.5 bits (153), Expect = 4e-10
 Identities = 42/110 (38%), Positives = 57/110 (51%), Gaps = 2/110 (1%)
 Frame = -2

Query: 571 IRLRTGIVPEAVTLEHVDKSVAFD--RSSAPKDFQVSGWYQGADDDSDKQPRMPTSLGEF 398
           IRL   +    +TL+H   +VA     SSAP+DF V G    ADD+++        LG+F
Sbjct: 325 IRLPGHVQLSDITLQHPPPTVAHTGGASSAPRDFAVYGLQ--ADDETE------VFLGKF 376

Query: 397 TYDLEKSNAQTFQLDRTTADASVVNMVRLDFSSNHGQPELTCIYRFRVHG 248
            +D++KS  QTF L      A     V++   SN G P  TC+YR R HG
Sbjct: 377 IFDVQKSEIQTFHLQNDPPSA--FPKVKIQILSNWGHPRFTCLYRVRAHG 424

>SPAG4_RAT (O55034) Sperm-associated antigen 4 protein (Outer dense|
           fiber-associated protein SPAG4)
          Length = 444

 Score = 62.8 bits (151), Expect = 7e-10
 Identities = 42/110 (38%), Positives = 56/110 (50%), Gaps = 2/110 (1%)
 Frame = -2

Query: 571 IRLRTGIVPEAVTLEHVDKSVAFD--RSSAPKDFQVSGWYQGADDDSDKQPRMPTSLGEF 398
           IRL   +    +TL+H   +VA     SSAP+DF V G    ADDD  +       LG+F
Sbjct: 325 IRLPGHVQLSDITLQHPPPTVAHTGGASSAPRDFAVFGLQ--ADDDETE-----VFLGKF 377

Query: 397 TYDLEKSNAQTFQLDRTTADASVVNMVRLDFSSNHGQPELTCIYRFRVHG 248
            ++++KS  QTF L      A     V++   SN G P  TC+YR R HG
Sbjct: 378 IFEVQKSEIQTFHLQNDPPSA--FPKVKIQILSNWGHPRFTCLYRVRAHG 425

>SPAG4_HUMAN (Q9NPE6) Sperm-associated antigen 4 protein (Outer dense|
           fiber-associated protein SPAG4)
          Length = 437

 Score = 61.6 bits (148), Expect = 2e-09
 Identities = 43/110 (39%), Positives = 57/110 (51%), Gaps = 4/110 (3%)
 Frame = -2

Query: 538 VTLEHVDKSVAFD--RSSAPKDFQVSGWYQGADDDSDKQPRMPTSLGEFTYDLEKSNAQT 365
           +TL+H   SV      +SAP+DF V G  Q  D+          SLG+FT+D+EKS  QT
Sbjct: 334 ITLQHPPPSVEHTGGANSAPRDFAVFG-LQVYDETE-------VSLGKFTFDVEKSEIQT 385

Query: 364 FQLDRTTADASVVNMVRLDFSSNHGQPELTCIYRFRVHG--SEPGSLGTA 221
           F L      A     V++   SN G P  TC+YR R HG  +  G+ G+A
Sbjct: 386 FHLQNDPPAA--FPKVKIQILSNWGHPRFTCLYRVRAHGVRTSEGAEGSA 433

>SPA4L_MOUSE (Q9DA32) Sperm-associated antigen 4-like protein|
          Length = 348

 Score = 59.7 bits (143), Expect = 6e-09
 Identities = 40/111 (36%), Positives = 55/111 (49%), Gaps = 2/111 (1%)
 Frame = -2

Query: 571 IRLRTGIVPEAVTLEHVDKSVAFDRS--SAPKDFQVSGWYQGADDDSDKQPRMPTSLGEF 398
           IRL   +    +TL+H+ K+++   S  +APKDF + G         +  PR    LG F
Sbjct: 236 IRLAQKVYLSNITLQHIPKTISLSGSLDTAPKDFVIYGL--------ESLPREEVFLGAF 287

Query: 397 TYDLEKSNAQTFQLDRTTADASVVNMVRLDFSSNHGQPELTCIYRFRVHGS 245
            +  E    QTFQL      +     V++  SSN G P  TC+YR RVHGS
Sbjct: 288 QFQPENI-IQTFQLQNLPPRSFAA--VKVKISSNWGNPRFTCMYRVRVHGS 335

>SPA4L_HUMAN (Q8TC36) Sperm-associated antigen 4-like protein (Testis and|
           spermatogenesis-related gene 4 protein)
          Length = 379

 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 38/111 (34%), Positives = 55/111 (49%), Gaps = 2/111 (1%)
 Frame = -2

Query: 571 IRLRTGIVPEAVTLEHVDKSVAFDRS--SAPKDFQVSGWYQGADDDSDKQPRMPTSLGEF 398
           I+L   +    +TL+H+ K+++   S  +APKDF + G         +  P+    LG F
Sbjct: 263 IQLAQKVYLSNLTLQHIPKTISLSGSLDTAPKDFVIYGM--------EGSPKEEVFLGAF 314

Query: 397 TYDLEKSNAQTFQLDRTTADASVVNMVRLDFSSNHGQPELTCIYRFRVHGS 245
            +  E    Q F L    A A   + V++  SSN G P  TC+YR RVHGS
Sbjct: 315 QFQPENI-IQMFPLQNQPARA--FSAVKVKISSNWGNPGFTCLYRVRVHGS 362

>UNC84_CAEEL (Q20745) Nuclear migration and anchoring protein unc-84|
            (Uncoordinated protein 84)
          Length = 1111

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 38/100 (38%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
 Frame = -2

Query: 541  AVTLEHVDKSVAFD--RSSAPKDFQVSGWYQGADDDSDKQPRMPTSLGEFTYDLEKSNAQ 368
            +++ EH+   VA +  RSSAPK   V  W     DD + +      +G++TYDL+    Q
Sbjct: 1016 SISYEHIGSEVAPEGNRSSAPKGVLV--WAYKQIDDLNSR----VLIGDYTYDLDGPPLQ 1069

Query: 367  TFQLDRTTADASVVNMVRLDFSSNHGQPELTCIYRFRVHG 248
             F L +   D  V   V L+ +SN+G P  TC+YR RVHG
Sbjct: 1070 FF-LAKHKPDFPV-KFVELEVTSNYGAP-FTCLYRLRVHG 1106

>SUN1_CAEEL (Q20924) Sun domain protein 1|
          Length = 473

 Score = 33.9 bits (76), Expect = 0.34
 Identities = 28/108 (25%), Positives = 45/108 (41%)
 Frame = -2

Query: 571 IRLRTGIVPEAVTLEHVDKSVAFDRSSAPKDFQVSGWYQGADDDSDKQPRMPTSLGEFTY 392
           ++L   ++P++V+ +HV  S     + APK + V       D    K   +  +      
Sbjct: 337 VKLARFVIPKSVSYQHVRWS-GIVPNHAPKLYDVVAC---TDSCCTKWQPLVANCEYKER 392

Query: 391 DLEKSNAQTFQLDRTTADASVVNMVRLDFSSNHGQPELTCIYRFRVHG 248
           D      + F    T  + S +N V+  F  NHG    TC Y  RV+G
Sbjct: 393 DGSYDEQEQFCSVPTIQNHSPINHVQFRFRENHGDMPKTCAYLIRVYG 440

>FAT2_DROME (Q9VW71) Putative fat-like cadherin-related tumor suppressor homolog|
            precursor
          Length = 4705

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -2

Query: 406  GEFTYDLEKSNAQTFQLDRTTADASV 329
            GE  Y+L+K N + F+LDR + + S+
Sbjct: 2170 GEVRYELKKGNGELFKLDRKSGELSI 2195

>USH2A_HUMAN (O75445) Usherin precursor (Usher syndrome type-2A protein) (Usher|
            syndrome type IIa protein)
          Length = 5202

 Score = 24.6 bits (52), Expect(2) = 8.5
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 273  ASTASGCTAASLALSAPQPREA 208
            A T +GCT +S AL+   P+EA
Sbjct: 2034 ACTLAGCTESSHALNISTPQEA 2055



 Score = 22.7 bits (47), Expect(2) = 8.5
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 445  DDSDKQPRMPTSLGEF 398
            +DS + PRMP++  EF
Sbjct: 1994 EDSTRPPRMPSASAEF 2009


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,408,507
Number of Sequences: 219361
Number of extensions: 1296545
Number of successful extensions: 3567
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3547
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4872342800
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)