Clone Information

BLAST Search Result

Clone Name	rbaal12h24
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|NM_194696.1\| Oryza sativa (japonica cultivar-group) unknown ...	48	0.033
2	gb\|AC145127.1\| Oryza sativa (japonica cultivar-group) chromosome...	48	0.033
3	gb\|AC025098.5\| Oryza sativa (japonica cultivar-group) chromosome...	48	0.033
4	dbj\|AP008216.1\| Oryza sativa (japonica cultivar-group) genomic D...	48	0.033
5	dbj\|AK102940.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	48	0.033
6	dbj\|AK063758.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	48	0.033
7	gb\|AE016959.3\| Oryza sativa (japonica cultivar-group) chromosome...	48	0.033
8	ref\|NM_194687.1\| Oryza sativa (japonica cultivar-group) unknown ...	46	0.13
9	ref\|NM_194682.1\| Oryza sativa (japonica cultivar-group) unknown ...	46	0.13
10	gb\|AC079128.2\| Oryza sativa (japonica cultivar-group) chromosome...	46	0.13
11	dbj\|AK064648.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	46	0.13
12	dbj\|AK060187.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	46	0.13
13	ref\|NM_194702.1\| Oryza sativa (japonica cultivar-group) putative...	42	2.1
14	ref\|NM_194700.1\| Oryza sativa (japonica cultivar-group) unknown ...	42	2.1
15	gb\|AC126593.5\| Rattus norvegicus 13 BAC CH230-103N15 (Children's...	42	2.1
16	emb\|AL356270.11\| Human DNA sequence from clone RP5-873O15 on chr...	42	2.1
17	dbj\|AK121817.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	42	2.1
18	dbj\|AK110742.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	42	2.1
19	dbj\|AK104771.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	42	2.1
20	dbj\|AK101231.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	42	2.1
21	dbj\|AK060163.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	42	2.1
22	ref\|NM_180152.2\| Arabidopsis thaliana carbohydrate transporter/ ...	40	8.1
23	ref\|NM_130369.2\| Arabidopsis thaliana carbohydrate transporter/ ...	40	8.1
24	gb\|AC016250.5\| Homo sapiens chromosome 8 clone RP11-516P9, compl...	40	8.1
25	emb\|Z46794.1\|CER06F6 Caenorhabditis elegans Cosmid R06F6, comple...	40	8.1
26	gb\|AC122307.4\| Mus musculus BAC clone RP23-287C21 from 12, compl...	40	8.1
27	emb\|AL391988.14\| Human DNA sequence from clone RP11-129M16 on ch...	40	8.1
28	gb\|BT000053.1\| Arabidopsis thaliana putative putative sister-chr...	40	8.1
29	gb\|AY120715.1\| Arabidopsis thaliana putative putative sister-chr...	40	8.1
30	gb\|AC023943.6\| Homo sapiens chromosome , clone RP11-1G18, comple...	40	8.1
31	gb\|AC151989.4\| Mus musculus BAC clone RP23-298C3 from chromosome...	40	8.1
32	gb\|AC158513.2\| Mus musculus BAC clone RP24-404N1 from chromosome...	40	8.1
33	ref\|NM_063921.3\| Caenorhabditis elegans R06F6.2 (R06F6.2) mRNA, ...	40	8.1
34	emb\|BX510912.4\| Zebrafish DNA sequence from clone CH211-18J22 in...	40	8.1
35	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.1
36	emb\|BX819760.1\|CNS0A8HV Arabidopsis thaliana Full-length cDNA Co...	40	8.1
37	emb\|BX819759.1\|CNS0A8HU Arabidopsis thaliana Full-length cDNA Co...	40	8.1
38	gb\|AY084684.1\| Arabidopsis thaliana clone 114959 mRNA, complete ...	40	8.1
39	gb\|AC116015.16\| Homo sapiens chromosome 11, clone RP11-356D19, c...	40	8.1
40	dbj\|AP003622.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.1
41	gb\|AC005880.3\|AC005880 citb_43_a_11, complete sequence	40	8.1
42	emb\|CT486009.11\| Mouse DNA sequence from clone RP24-160E3 on chr...	40	8.1
43	gb\|AC101699.9\| Mus musculus chromosome 1, clone RP23-244H18, com...	40	8.1
44	dbj\|AP003477.2\| Homo sapiens genomic DNA, chromosome 8q23, clone...	40	8.1
45	emb\|AL671185.8\| Mouse DNA sequence from clone RP23-192N1 on chro...	40	8.1

>ref|NM_194696.1| Oryza sativa (japonica cultivar-group) unknown protein
            (OSJNBa0020E23.13), mRNA
          Length = 2850

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 45/52 (86%)
 Strand = Plus / Minus

                                                                
Query: 447  cctccgagcatatgatttcaacaatctcaagctgttcgcacgtaaatgatct 498
            ||||| ||||| ||| ||||||||||| ||| || || ||||||||||||||
Sbjct: 1348 cctccaagcatttgacttcaacaatcttaaggtgctcacacgtaaatgatct 1297



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 557  agtttaagagttagcttcttcagattaggtgagttctgaag 597
            ||||| |||||||||||||  || || ||||||||||||||
Sbjct: 2606 agtttcagagttagcttctgtagttttggtgagttctgaag 2566

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>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
               Pseudo10p0.0-10p4.4, complete sequence
          Length = 2331000

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 45/52 (86%)
 Strand = Plus / Plus

                                                                   
Query: 447     cctccgagcatatgatttcaacaatctcaagctgttcgcacgtaaatgatct 498
               ||||| ||||| ||| ||||||||||| ||| || || ||||||||||||||
Sbjct: 1690866 cctccaagcatttgacttcaacaatcttaaggtgctcacacgtaaatgatct 1690917



 Score = 48.1 bits (24), Expect = 0.033
 Identities = 45/52 (86%)
 Strand = Plus / Plus

                                                                   
Query: 447     cctccgagcatatgatttcaacaatctcaagctgttcgcacgtaaatgatct 498
               ||||| ||||| ||| ||||||||||| ||| || ||||| |||||||||||
Sbjct: 1667731 cctccaagcatttgacttcaacaatcttaaggtgctcgcatgtaaatgatct 1667782



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 44/51 (86%)
 Strand = Plus / Plus

                                                                  
Query: 448     ctccgagcatatgatttcaacaatctcaagctgttcgcacgtaaatgatct 498
               |||||||||||||| ||||||||||| ||| ||  | || |||||||||||
Sbjct: 1636177 ctccgagcatatgacttcaacaatcttaagatgaccacatgtaaatgatct 1636227



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                          
Query: 447     cctccgagcatatgatttcaacaatct 473
               ||||||||||||||| |||||||||||
Sbjct: 1542086 cctccgagcatatgacttcaacaatct 1542112



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 60/73 (82%)
 Strand = Plus / Plus

                                                                           
Query: 448     ctccgagcatatgatttcaacaatctcaagctgttcgcacgtaaatgatctatcctccag 507
               |||| ||||||| | ||||||||||| ||| || || || ||||||||||| || || ||
Sbjct: 1734814 ctccaagcatatcacttcaacaatcttaaggtgctcacatgtaaatgatctttcttcaag 1734873

                            
Query: 508     ctcgccgatgatt 520
               ||| || ||||||
Sbjct: 1734874 ctcaccaatgatt 1734886



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                        
Query: 557     agtttaagagttagcttcttcagattaggtgagttctgaag 597
               ||||| |||||||||||||  ||  ||||||||||||||||
Sbjct: 1723275 agtttcagagttagcttctgtagtctaggtgagttctgaag 1723315



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                        
Query: 557     agtttaagagttagcttcttcagattaggtgagttctgaag 597
               ||||| |||||||||||||  || || ||||||||||||||
Sbjct: 1687167 agtttcagagttagcttctgtagttttggtgagttctgaag 1687207

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>gb|AC025098.5| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBa0020E23, complete sequence
          Length = 151359

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 45/52 (86%)
 Strand = Plus / Plus

                                                                 
Query: 447   cctccgagcatatgatttcaacaatctcaagctgttcgcacgtaaatgatct 498
             ||||| ||||| ||| ||||||||||| ||| || || ||||||||||||||
Sbjct: 87963 cctccaagcatttgacttcaacaatcttaaggtgctcacacgtaaatgatct 88014



 Score = 48.1 bits (24), Expect = 0.033
 Identities = 45/52 (86%)
 Strand = Plus / Plus

                                                                 
Query: 447   cctccgagcatatgatttcaacaatctcaagctgttcgcacgtaaatgatct 498
             ||||| ||||| ||| ||||||||||| ||| || ||||| |||||||||||
Sbjct: 64828 cctccaagcatttgacttcaacaatcttaaggtgctcgcatgtaaatgatct 64879



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 44/51 (86%)
 Strand = Plus / Plus

                                                                
Query: 448   ctccgagcatatgatttcaacaatctcaagctgttcgcacgtaaatgatct 498
             |||||||||||||| ||||||||||| ||| ||  | || |||||||||||
Sbjct: 33274 ctccgagcatatgacttcaacaatcttaagatgaccacatgtaaatgatct 33324



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 60/73 (82%)
 Strand = Plus / Plus

                                                                          
Query: 448    ctccgagcatatgatttcaacaatctcaagctgttcgcacgtaaatgatctatcctccag 507
              |||| ||||||| | ||||||||||| ||| || || || ||||||||||| || || ||
Sbjct: 131911 ctccaagcatatcacttcaacaatcttaaggtgctcacatgtaaatgatctttcttcaag 131970

                           
Query: 508    ctcgccgatgatt 520
              ||| || ||||||
Sbjct: 131971 ctcaccaatgatt 131983



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                       
Query: 557    agtttaagagttagcttcttcagattaggtgagttctgaag 597
              ||||| |||||||||||||  ||  ||||||||||||||||
Sbjct: 120372 agtttcagagttagcttctgtagtctaggtgagttctgaag 120412



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                      
Query: 557   agtttaagagttagcttcttcagattaggtgagttctgaag 597
             ||||| |||||||||||||  || || ||||||||||||||
Sbjct: 84264 agtttcagagttagcttctgtagttttggtgagttctgaag 84304

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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 45/52 (86%)
 Strand = Plus / Plus

                                                                   
Query: 447     cctccgagcatatgatttcaacaatctcaagctgttcgcacgtaaatgatct 498
               ||||| ||||| ||| ||||||||||| ||| || || ||||||||||||||
Sbjct: 1690866 cctccaagcatttgacttcaacaatcttaaggtgctcacacgtaaatgatct 1690917



 Score = 48.1 bits (24), Expect = 0.033
 Identities = 45/52 (86%)
 Strand = Plus / Plus

                                                                   
Query: 447     cctccgagcatatgatttcaacaatctcaagctgttcgcacgtaaatgatct 498
               ||||| ||||| ||| ||||||||||| ||| || ||||| |||||||||||
Sbjct: 1667731 cctccaagcatttgacttcaacaatcttaaggtgctcgcatgtaaatgatct 1667782



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 44/51 (86%)
 Strand = Plus / Plus

                                                                  
Query: 448     ctccgagcatatgatttcaacaatctcaagctgttcgcacgtaaatgatct 498
               |||||||||||||| ||||||||||| ||| ||  | || |||||||||||
Sbjct: 1636177 ctccgagcatatgacttcaacaatcttaagatgaccacatgtaaatgatct 1636227



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                          
Query: 447     cctccgagcatatgatttcaacaatct 473
               ||||||||||||||| |||||||||||
Sbjct: 1542086 cctccgagcatatgacttcaacaatct 1542112



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 60/73 (82%)
 Strand = Plus / Plus

                                                                           
Query: 448     ctccgagcatatgatttcaacaatctcaagctgttcgcacgtaaatgatctatcctccag 507
               |||| ||||||| | ||||||||||| ||| || || || ||||||||||| || || ||
Sbjct: 1734814 ctccaagcatatcacttcaacaatcttaaggtgctcacatgtaaatgatctttcttcaag 1734873

                            
Query: 508     ctcgccgatgatt 520
               ||| || ||||||
Sbjct: 1734874 ctcaccaatgatt 1734886



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                        
Query: 557     agtttaagagttagcttcttcagattaggtgagttctgaag 597
               ||||| |||||||||||||  ||  ||||||||||||||||
Sbjct: 1723275 agtttcagagttagcttctgtagtctaggtgagttctgaag 1723315



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                        
Query: 557     agtttaagagttagcttcttcagattaggtgagttctgaag 597
               ||||| |||||||||||||  || || ||||||||||||||
Sbjct: 1687167 agtttcagagttagcttctgtagttttggtgagttctgaag 1687207

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>dbj|AK102940.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033114K11, full
            insert sequence
          Length = 1775

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 45/52 (86%)
 Strand = Plus / Minus

                                                                
Query: 447  cctccgagcatatgatttcaacaatctcaagctgttcgcacgtaaatgatct 498
            ||||| ||||| ||| ||||||||||| ||| || ||||| |||||||||||
Sbjct: 1384 cctccaagcatttgacttcaacaatcttaaggtgctcgcatgtaaatgatct 1333

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>dbj|AK063758.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-A09, full
           insert sequence
          Length = 775

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 45/52 (86%)
 Strand = Plus / Minus

                                                               
Query: 447 cctccgagcatatgatttcaacaatctcaagctgttcgcacgtaaatgatct 498
           ||||| ||||| ||| ||||||||||| ||| || || ||||||||||||||
Sbjct: 351 cctccaagcatttgacttcaacaatcttaaggtgctcacacgtaaatgatct 300

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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 45/52 (86%)
 Strand = Plus / Plus

                                                                   
Query: 447     cctccgagcatatgatttcaacaatctcaagctgttcgcacgtaaatgatct 498
               ||||| ||||| ||| ||||||||||| ||| || || ||||||||||||||
Sbjct: 1690817 cctccaagcatttgacttcaacaatcttaaggtgctcacacgtaaatgatct 1690868



 Score = 48.1 bits (24), Expect = 0.033
 Identities = 45/52 (86%)
 Strand = Plus / Plus

                                                                   
Query: 447     cctccgagcatatgatttcaacaatctcaagctgttcgcacgtaaatgatct 498
               ||||| ||||| ||| ||||||||||| ||| || ||||| |||||||||||
Sbjct: 1667682 cctccaagcatttgacttcaacaatcttaaggtgctcgcatgtaaatgatct 1667733



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 44/51 (86%)
 Strand = Plus / Plus

                                                                  
Query: 448     ctccgagcatatgatttcaacaatctcaagctgttcgcacgtaaatgatct 498
               |||||||||||||| ||||||||||| ||| ||  | || |||||||||||
Sbjct: 1636128 ctccgagcatatgacttcaacaatcttaagatgaccacatgtaaatgatct 1636178



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                          
Query: 447     cctccgagcatatgatttcaacaatct 473
               ||||||||||||||| |||||||||||
Sbjct: 1542083 cctccgagcatatgacttcaacaatct 1542109



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 60/73 (82%)
 Strand = Plus / Plus

                                                                           
Query: 448     ctccgagcatatgatttcaacaatctcaagctgttcgcacgtaaatgatctatcctccag 507
               |||| ||||||| | ||||||||||| ||| || || || ||||||||||| || || ||
Sbjct: 1734765 ctccaagcatatcacttcaacaatcttaaggtgctcacatgtaaatgatctttcttcaag 1734824

                            
Query: 508     ctcgccgatgatt 520
               ||| || ||||||
Sbjct: 1734825 ctcaccaatgatt 1734837



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                        
Query: 557     agtttaagagttagcttcttcagattaggtgagttctgaag 597
               ||||| |||||||||||||  ||  ||||||||||||||||
Sbjct: 1723226 agtttcagagttagcttctgtagtctaggtgagttctgaag 1723266



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                        
Query: 557     agtttaagagttagcttcttcagattaggtgagttctgaag 597
               ||||| |||||||||||||  || || ||||||||||||||
Sbjct: 1687118 agtttcagagttagcttctgtagttttggtgagttctgaag 1687158

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>ref|NM_194687.1| Oryza sativa (japonica cultivar-group) unknown protein
            (OSJNBa0020E23.4), mRNA
          Length = 1152

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                               
Query: 448  ctccgagcatatgatttcaacaatctcaagctgttcgcacgtaaatgatct 498
            |||||||||||||| ||||||||||| ||| ||  | || |||||||||||
Sbjct: 1071 ctccgagcatatgacttcaacaatcttaagatgaccacatgtaaatgatct 1021

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>ref|NM_194682.1| Oryza sativa (japonica cultivar-group) unknown protein
            (OSJNBa0056A20.11), mRNA
          Length = 1176

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 447  cctccgagcatatgatttcaacaatct 473
            ||||||||||||||| |||||||||||
Sbjct: 1054 cctccgagcatatgacttcaacaatct 1028

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>gb|AC079128.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBa0056A20, complete sequence
          Length = 151163

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 447   cctccgagcatatgatttcaacaatct 473
             ||||||||||||||| |||||||||||
Sbjct: 60659 cctccgagcatatgacttcaacaatct 60685

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>dbj|AK064648.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-114-D08, full
            insert sequence
          Length = 1685

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 447  cctccgagcatatgatttcaacaatct 473
            ||||||||||||||| |||||||||||
Sbjct: 1216 cctccgagcatatgacttcaacaatct 1190

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>dbj|AK060187.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-001-D05, full
            insert sequence
          Length = 1632

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                               
Query: 448  ctccgagcatatgatttcaacaatctcaagctgttcgcacgtaaatgatct 498
            |||||||||||||| ||||||||||| ||| ||  | || |||||||||||
Sbjct: 1152 ctccgagcatatgacttcaacaatcttaagatgaccacatgtaaatgatct 1102

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>ref|NM_194702.1| Oryza sativa (japonica cultivar-group) putative copia-type
            polyprotein (OSJNBa0020E23.19), mRNA
          Length = 5412

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 60/73 (82%)
 Strand = Plus / Minus

                                                                        
Query: 448  ctccgagcatatgatttcaacaatctcaagctgttcgcacgtaaatgatctatcctccag 507
            |||| ||||||| | ||||||||||| ||| || || || ||||||||||| || || ||
Sbjct: 5334 ctccaagcatatcacttcaacaatcttaaggtgctcacatgtaaatgatctttcttcaag 5275

                         
Query: 508  ctcgccgatgatt 520
            ||| || ||||||
Sbjct: 5274 ctcaccaatgatt 5262

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>ref|NM_194700.1| Oryza sativa (japonica cultivar-group) unknown protein
            (OSJNBa0020E23.17), mRNA
          Length = 1353

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 557  agtttaagagttagcttcttcagattaggtgagttctgaag 597
            ||||| |||||||||||||  ||  ||||||||||||||||
Sbjct: 1124 agtttcagagttagcttctgtagtctaggtgagttctgaag 1084

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>gb|AC126593.5| Rattus norvegicus 13 BAC CH230-103N15 (Children's Hospital Oakland
            Research Institute) complete sequence
          Length = 169168

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 164  atggcaccacataggaaaatg 184
            |||||||||||||||||||||
Sbjct: 3886 atggcaccacataggaaaatg 3866

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>emb|AL356270.11| Human DNA sequence from clone RP5-873O15 on chromosome 1 Contains part
             of a novel gene and the CLCA3 gene for chloride channel
             calcium activated family member 3, complete sequence
          Length = 103640

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 225   aacatagttcaaaaccaacac 245
             |||||||||||||||||||||
Sbjct: 76843 aacatagttcaaaaccaacac 76863

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>dbj|AK121817.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033098N17, full
           insert sequence
          Length = 1381

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 557 agtttaagagttagcttcttcagattaggtgagttctgaag 597
           ||||| |||||||||||||  ||  ||||||||||||||||
Sbjct: 793 agtttcagagttagcttctgtagtctaggtgagttctgaag 753

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>dbj|AK110742.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-170-F09, full
            insert sequence
          Length = 1494

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 60/73 (82%)
 Strand = Plus / Minus

                                                                        
Query: 448  ctccgagcatatgatttcaacaatctcaagctgttcgcacgtaaatgatctatcctccag 507
            |||| ||||||| | ||||||||||| ||| || || || ||||||||||| || || ||
Sbjct: 1151 ctccaagcatatcacttcaacaatcttaaggtgctcacatgtaaatgatctttcttcaag 1092

                         
Query: 508  ctcgccgatgatt 520
            ||| || ||||||
Sbjct: 1091 ctcaccaatgatt 1079

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>dbj|AK104771.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-A08, full
           insert sequence
          Length = 990

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 557 agtttaagagttagcttcttcagattaggtgagttctgaag 597
           ||||| |||||||||||||  ||  ||||||||||||||||
Sbjct: 402 agtttcagagttagcttctgtagtctaggtgagttctgaag 362

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>dbj|AK101231.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033031I07, full
            insert sequence
          Length = 1847

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 557  agtttaagagttagcttcttcagattaggtgagttctgaag 597
            ||||| |||||||||||||  ||  ||||||||||||||||
Sbjct: 1285 agtttcagagttagcttctgtagtctaggtgagttctgaag 1245

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>dbj|AK060163.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-B01, full
           insert sequence
          Length = 990

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 557 agtttaagagttagcttcttcagattaggtgagttctgaag 597
           ||||| |||||||||||||  ||  ||||||||||||||||
Sbjct: 402 agtttcagagttagcttctgtagtctaggtgagttctgaag 362

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>ref|NM_180152.2| Arabidopsis thaliana carbohydrate transporter/ sugar porter
           AT2G48020 transcript variant AT2G48020.2 mRNA, complete
           cds
          Length = 1751

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 165 tggcaccacataggaaaatg 184
           ||||||||||||||||||||
Sbjct: 606 tggcaccacataggaaaatg 587

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>ref|NM_130369.2| Arabidopsis thaliana carbohydrate transporter/ sugar porter
           AT2G48020 transcript variant AT2G48020.1 mRNA, complete
           cds
          Length = 1763

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 165 tggcaccacataggaaaatg 184
           ||||||||||||||||||||
Sbjct: 622 tggcaccacataggaaaatg 603

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>gb|AC016250.5| Homo sapiens chromosome 8 clone RP11-516P9, complete sequence
          Length = 199569

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 421   attaaccccaggtagcagtg 440
             ||||||||||||||||||||
Sbjct: 51449 attaaccccaggtagcagtg 51468

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>emb|Z46794.1|CER06F6 Caenorhabditis elegans Cosmid R06F6, complete sequence
          Length = 41452

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 24   cacccatgaaaatgtcaaaa 43
            ||||||||||||||||||||
Sbjct: 5416 cacccatgaaaatgtcaaaa 5435

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>gb|AC122307.4| Mus musculus BAC clone RP23-287C21 from 12, complete sequence
          Length = 194202

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 296   ggtgattccatgtaatttca 315
             ||||||||||||||||||||
Sbjct: 63799 ggtgattccatgtaatttca 63818

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>emb|AL391988.14| Human DNA sequence from clone RP11-129M16 on chromosome 10 Contains
            the 3' end of the SLC18A2 gene for member 2 solute
            carrier family 18 (vesicular monoamine) and the 3' end of
            gene LOC118987, complete sequence
          Length = 104711

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 459  tgatttcaacaatctcaagc 478
            ||||||||||||||||||||
Sbjct: 3501 tgatttcaacaatctcaagc 3520

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>gb|BT000053.1| Arabidopsis thaliana putative putative sister-chromatide cohesion
           protein (At2g48020) mRNA, complete cds
          Length = 1435

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 165 tggcaccacataggaaaatg 184
           ||||||||||||||||||||
Sbjct: 420 tggcaccacataggaaaatg 401

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>gb|AY120715.1| Arabidopsis thaliana putative putative sister-chromatide cohesion
           protein (At2g48020) mRNA, complete cds
          Length = 1686

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 165 tggcaccacataggaaaatg 184
           ||||||||||||||||||||
Sbjct: 549 tggcaccacataggaaaatg 530

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>gb|AC023943.6| Homo sapiens chromosome , clone RP11-1G18, complete sequence
          Length = 153061

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 370    attgacacacatctgatcag 389
              ||||||||||||||||||||
Sbjct: 115258 attgacacacatctgatcag 115239

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>gb|AC151989.4| Mus musculus BAC clone RP23-298C3 from chromosome 7, complete sequence
          Length = 217239

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 94     agccataaactcaaccagaa 113
              ||||||||||||||||||||
Sbjct: 148456 agccataaactcaaccagaa 148437

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>gb|AC158513.2| Mus musculus BAC clone RP24-404N1 from chromosome 9, complete sequence
          Length = 156478

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 120   attttgcatattcttatgca 139
             ||||||||||||||||||||
Sbjct: 81435 attttgcatattcttatgca 81454

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>ref|NM_063921.3| Caenorhabditis elegans R06F6.2 (R06F6.2) mRNA, complete cds
          Length = 3327

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 24   cacccatgaaaatgtcaaaa 43
            ||||||||||||||||||||
Sbjct: 1754 cacccatgaaaatgtcaaaa 1735

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>emb|BX510912.4| Zebrafish DNA sequence from clone CH211-18J22 in linkage group 3,
              complete sequence
          Length = 189210

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 158    agaattatggcaccacataggaaaatga 185
              |||||||||||||||||  |||||||||
Sbjct: 169787 agaattatggcaccacactggaaaatga 169760

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 304      catgtaatttcaactgtagt 323
                ||||||||||||||||||||
Sbjct: 22744193 catgtaatttcaactgtagt 22744212

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>emb|BX819760.1|CNS0A8HV Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS24ZD02 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1666

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 165 tggcaccacataggaaaatg 184
           ||||||||||||||||||||
Sbjct: 536 tggcaccacataggaaaatg 517

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>emb|BX819759.1|CNS0A8HU Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS24ZD01 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1675

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 165 tggcaccacataggaaaatg 184
           ||||||||||||||||||||
Sbjct: 536 tggcaccacataggaaaatg 517

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>gb|AY084684.1| Arabidopsis thaliana clone 114959 mRNA, complete sequence
          Length = 1741

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 165 tggcaccacataggaaaatg 184
           ||||||||||||||||||||
Sbjct: 622 tggcaccacataggaaaatg 603

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>gb|AC116015.16| Homo sapiens chromosome 11, clone RP11-356D19, complete sequence
          Length = 180634

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 370   attgacacacatctgatcag 389
             ||||||||||||||||||||
Sbjct: 90708 attgacacacatctgatcag 90727

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>dbj|AP003622.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0633E08
          Length = 136471

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 304   catgtaatttcaactgtagt 323
             ||||||||||||||||||||
Sbjct: 31144 catgtaatttcaactgtagt 31163

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>gb|AC005880.3|AC005880 citb_43_a_11, complete sequence
          Length = 146388

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 459   tgatttcaacaatctcaagc 478
             ||||||||||||||||||||
Sbjct: 42330 tgatttcaacaatctcaagc 42349

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>emb|CT486009.11| Mouse DNA sequence from clone RP24-160E3 on chromosome 9, complete
              sequence
          Length = 193947

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 120    attttgcatattcttatgca 139
              ||||||||||||||||||||
Sbjct: 106063 attttgcatattcttatgca 106082

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>gb|AC101699.9| Mus musculus chromosome 1, clone RP23-244H18, complete sequence
          Length = 173113

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 255   agaagaaataatgtttgcctgcct 278
             ||||||||||||||||| ||||||
Sbjct: 87251 agaagaaataatgtttggctgcct 87228

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>dbj|AP003477.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB2047A4
          Length = 179110

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 421   attaaccccaggtagcagtg 440
             ||||||||||||||||||||
Sbjct: 11569 attaaccccaggtagcagtg 11550

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>emb|AL671185.8| Mouse DNA sequence from clone RP23-192N1 on chromosome X, complete
             sequence
          Length = 229574

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 575   ttcagattaggtgagttctg 594
             ||||||||||||||||||||
Sbjct: 93650 ttcagattaggtgagttctg 93631


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,188,475
Number of Sequences: 3902068
Number of extensions: 5188475
Number of successful extensions: 88179
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 87933
Number of HSP's gapped (non-prelim): 246
length of query: 597
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 574
effective length of database: 17,143,297,704
effective search space: 9840252882096
effective search space used: 9840252882096
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result